Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006522.1 Hibiscus syriacus cultivar Beakdansim tig00015896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 204148
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:5736 original size:15 final size:15
Alignment explanation
Indices: 5716--5750 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
5706 TCCTCAATCC
*
5716 CCACCACCACCTCCA
1 CCACCAACACCTCCA
*
5731 CCACCAACGCCTCCA
1 CCACCAACACCTCCA
5746 CCACC
1 CCACC
5751 GGTTTTCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.66, G:0.03, T:0.06
Consensus pattern (15 bp):
CCACCAACACCTCCA
Found at i:5999 original size:18 final size:18
Alignment explanation
Indices: 5978--6013 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
5968 GCCACCACGT
*
5978 CATTCACCACCGCCACCA
1 CATTCACCACCACCACCA
*
5996 CATTCACCTCCACCACCA
1 CATTCACCACCACCACCA
6014 ATTTATCCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.56, G:0.03, T:0.14
Consensus pattern (18 bp):
CATTCACCACCACCACCA
Found at i:6080 original size:75 final size:75
Alignment explanation
Indices: 5966--6146 Score: 260
Period size: 75 Copynumber: 2.5 Consensus size: 75
5956 CTCCCCATCC
* * *
5966 CCGCCACCACGT-CA-TTCAC-CACCGCCACCACATTCACCTCCACCACCAATTTATCCATACTT
1 CCGCCACCACTTCCAGTTCACTCTCCACCACCACATTCACCTCCACCACCAATTTATCCATACTT
*
6028 ATCTCCACCG
66 ATCTCCACCA
*
6038 CCGCCACCACTTCCAGTTCACTCTCCTCCACCACATTCACCTCCACCACCAATTTATCCATACTT
1 CCGCCACCACTTCCAGTTCACTCTCCACCACCACATTCACCTCCACCACCAATTTATCCATACTT
*
6103 ATCTCCGCCA
66 ATCTCCACCA
** *
6113 CCATCGCCACTTCCAGTTCACTCTCCACCACCAC
1 CCGCCACCACTTCCAGTTCACTCTCCACCACCAC
6147 CCTCTCCTCC
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
72 11 0.11
73 2 0.02
74 5 0.05
75 79 0.81
ACGTcount: A:0.23, C:0.49, G:0.05, T:0.23
Consensus pattern (75 bp):
CCGCCACCACTTCCAGTTCACTCTCCACCACCACATTCACCTCCACCACCAATTTATCCATACTT
ATCTCCACCA
Found at i:7559 original size:21 final size:20
Alignment explanation
Indices: 7503--7560 Score: 70
Period size: 16 Copynumber: 3.0 Consensus size: 20
7493 ACTGCAAACA
7503 AATAAATAATTAAATAAAAT
1 AATAAATAATTAAATAAAAT
*
7523 AAT-AA-AA--AAATTAAAT
1 AATAAATAATTAAATAAAAT
7539 AATACAATAATTAAATAAAAT
1 AATA-AATAATTAAATAAAAT
7560 A
1 A
7561 CTAACAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 11 0.35
18 4 0.13
19 4 0.13
20 3 0.10
21 9 0.29
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAAATAATTAAATAAAAT
Found at i:20725 original size:18 final size:19
Alignment explanation
Indices: 20704--20739 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
20694 TTATTGAATC
*
20704 ATTATTA-AAATTTATCAA
1 ATTATTACAAAATTATCAA
20722 ATTATTACAAAATTATCA
1 ATTATTACAAAATTATCA
20740 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTATTACAAAATTATCAA
Found at i:35584 original size:37 final size:36
Alignment explanation
Indices: 35509--35584 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
35499 TTTTTATATT
*
35509 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
35545 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
35582 TTT
1 TTT
35585 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:35764 original size:20 final size:20
Alignment explanation
Indices: 35728--35765 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35718 ATCTTATTCT
**
35728 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
35748 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
35766 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:35979 original size:15 final size:16
Alignment explanation
Indices: 35941--35980 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
35931 ACAGAGACTC
*
35941 TGAATCATTCAACATT
1 TGAATCATTCAACACT
*
35957 TGAATCATTCAACGCT
1 TGAATCATTCAACACT
35973 T-AATCATT
1 TGAATCATT
35981 ATAAAGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (16 bp):
TGAATCATTCAACACT
Found at i:37939 original size:16 final size:15
Alignment explanation
Indices: 37918--37948 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
37908 GGTATTTTCA
37918 TTTTCCTTTTTCTTTT
1 TTTTCCTTTTT-TTTT
37934 TTTTCCTTTTTTTTT
1 TTTTCCTTTTTTTTT
37949 AAATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTCCTTTTTTTTT
Found at i:47062 original size:21 final size:20
Alignment explanation
Indices: 47038--47130 Score: 78
Period size: 20 Copynumber: 4.5 Consensus size: 20
47028 TGTTGCATTG
47038 CGCGTTGCGATAGTTGAAAAT
1 CGCGTTGCGAT-GTTGAAAAT
* ** **
47059 CGCGTTGCGATTTTTCATTT
1 CGCGTTGCGATGTTGAAAAT
* ** **
47079 CGCGTTGCGATTTTTCATTT
1 CGCGTTGCGATGTTGAAAAT
47099 CGCGTTGCGATAGTTGAAAAT
1 CGCGTTGCGAT-GTTGAAAAT
47120 CGCGTTGCGAT
1 CGCGTTGCGAT
47131 TTTCCATTTC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
20 35 0.57
21 26 0.43
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (20 bp):
CGCGTTGCGATGTTGAAAAT
Found at i:47083 original size:20 final size:20
Alignment explanation
Indices: 47058--47150 Score: 123
Period size: 20 Copynumber: 4.6 Consensus size: 20
47048 TAGTTGAAAA
47058 TCGCGTTGCGATTTTTCATT
1 TCGCGTTGCGATTTTTCATT
47078 TCGCGTTGCGATTTTTCATT
1 TCGCGTTGCGATTTTTCATT
* ** **
47098 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTTCATT
*
47119 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTTCATT
47139 TCGCGTTGCGAT
1 TCGCGTTGCGAT
47151 AGTCTACAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
20 47 0.76
21 15 0.24
ACGTcount: A:0.14, C:0.20, G:0.24, T:0.42
Consensus pattern (20 bp):
TCGCGTTGCGATTTTTCATT
Found at i:47105 original size:61 final size:61
Alignment explanation
Indices: 47033--47150 Score: 218
Period size: 61 Copynumber: 1.9 Consensus size: 61
47023 ATTCGTGTTG
*
47033 CATTGCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTT
1 CATTGCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTT
*
47094 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
1 CATTGCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
47151 AGTCTACAGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (61 bp):
CATTGCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTT
Found at i:47885 original size:19 final size:19
Alignment explanation
Indices: 47861--47929 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
47851 CAACGAATTT
47861 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
* * * **
47880 TCGCAACAACGACTGTAGACTA
1 TCG---CAACGAATTTGGAAAA
47902 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
47921 TCGCAACGA
1 TCGCAACGA
47930 CAACTGTAGA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
19 23 0.62
22 14 0.38
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (19 bp):
TCGCAACGAATTTGGAAAA
Found at i:47918 original size:41 final size:41
Alignment explanation
Indices: 47861--47969 Score: 175
Period size: 41 Copynumber: 2.6 Consensus size: 41
47851 CAACGAATTT
*
47861 TCGCAACGAATTTGGAAAATCGCAACAACGACTGTAGACTA
1 TCGCAACGAATTTGGAAAATCGCAACAACAACTGTAGACTA
*
47902 TCGCAACGAATTTGGAAAATCGCAACGACAACTGTAGACTA
1 TCGCAACGAATTTGGAAAATCGCAACAACAACTGTAGACTA
47943 TCGCAACGCGAA-TTGGAAAATCGCAAC
1 TCGCAA--CGAATTTGGAAAATCGCAAC
47970 GCGAACTGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
41 45 0.70
42 15 0.23
43 4 0.06
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (41 bp):
TCGCAACGAATTTGGAAAATCGCAACAACAACTGTAGACTA
Found at i:47948 original size:22 final size:22
Alignment explanation
Indices: 47879--47950 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
47869 AATTTGGAAA
* *
47879 ATCGCAACAACGACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * **
47901 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
47920 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
47942 ATCGCAACG
1 ATCGCAACG
47951 CGAATTGGAA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
19 13 0.35
20 1 0.03
21 2 0.05
22 21 0.57
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:47967 original size:20 final size:20
Alignment explanation
Indices: 47942--48096 Score: 157
Period size: 20 Copynumber: 7.7 Consensus size: 20
47932 ACTGTAGACT
47942 ATCGCAACGCGAATTGGAAA
1 ATCGCAACGCGAATTGGAAA
*
47962 ATCGCAACGCGAACTGGAAA
1 ATCGCAACGCGAATTGGAAA
** ** *
47982 ATCGCAACGCGGTTTTCAACT
1 ATCGCAACGCGAATTGGAA-A
*
48003 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAATTGGAAA
* ** *
48023 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAATTGGAA-A
*
48044 ATCGCAACGCGAACTGGAAA
1 ATCGCAACGCGAATTGGAAA
* *
48064 ATCGCAACGCGAAATGAAAA
1 ATCGCAACGCGAATTGGAAA
*
48084 ATCACAACGCGAA
1 ATCGCAACGCGAA
48097 ATGCAACGCG
Statistics
Matches: 107, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
20 78 0.73
21 29 0.27
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAATTGGAAA
Found at i:48008 original size:21 final size:21
Alignment explanation
Indices: 47982--48055 Score: 87
Period size: 21 Copynumber: 3.6 Consensus size: 21
47972 GAACTGGAAA
*
47982 ATCGCAACGCGGTTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
48003 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
48023 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
48044 ATCGCAACGCGA
1 ATCGCAACGCGA
48056 ACTGGAAAAT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 15 0.37
21 26 0.63
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:48013 original size:41 final size:41
Alignment explanation
Indices: 47962--48075 Score: 210
Period size: 41 Copynumber: 2.8 Consensus size: 41
47952 GAATTGGAAA
*
47962 ATCGCAACGCGAACTGGAAAATCGCAACGCGGTTTTCAACT
1 ATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACT
*
48003 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACT
48044 ATCGCAACGCGAACTGGAAAATCGCAACGCGA
1 ATCGCAACGCGAACTGGAAAATCGCAACGCGA
48076 AATGAAAAAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.17
Consensus pattern (41 bp):
ATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACT
Found at i:51630 original size:2 final size:2
Alignment explanation
Indices: 51623--51682 Score: 69
Period size: 2 Copynumber: 32.5 Consensus size: 2
51613 TCAAATGATA
51623 AT AT AT AT -T AT AT -T AT A- AT -T A- AT GAT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
51660 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
51683 ATTAATGTTC
Statistics
Matches: 51, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
1 6 0.12
2 43 0.84
3 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60003 original size:13 final size:13
Alignment explanation
Indices: 59985--60009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59975 ATCTTGTCCG
59985 TAATATATATATA
1 TAATATATATATA
59998 TAATATATATAT
1 TAATATATATAT
60010 GAGACAAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATATATATA
Found at i:61401 original size:2 final size:2
Alignment explanation
Indices: 61394--61437 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
61384 TGATGCTTTA
61394 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61436 AT
1 AT
61438 GTGTGAGTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66391 original size:25 final size:25
Alignment explanation
Indices: 66357--66405 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
66347 GGCTGGAACT
66357 TTTAGGGTTTGAAACCCTAATCTGG
1 TTTAGGGTTTGAAACCCTAATCTGG
66382 TTTAGGGTTTGAAACCCTAATCTG
1 TTTAGGGTTTGAAACCCTAATCTG
66406 ATGGGTTGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (25 bp):
TTTAGGGTTTGAAACCCTAATCTGG
Found at i:66492 original size:16 final size:14
Alignment explanation
Indices: 66478--66527 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
66468 TTGTAATATG
*
66478 TAATATTAATAATA
1 TAATAATAATAATA
66492 TAATAATAATAATA
1 TAATAATAATAATA
66506 -AATAATAATAATAA
1 TAATAATAATAAT-A
66520 TAA-AATAA
1 TAATAATAA
66528 CGATAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
13 12 0.36
14 19 0.58
15 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:66497 original size:3 final size:3
Alignment explanation
Indices: 66478--66527 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
66468 TTGTAATATG
*
66478 TAA TAT TAA TAA T-A TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
66523 -AA TAA
1 TAA TAA
66528 CGATAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.83
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:66533 original size:27 final size:27
Alignment explanation
Indices: 66479--66534 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
66469 TGTAATATGT
* *
66479 AATATTAATAATATAATAATAATAATA
1 AATAATAATAATATAATAATAACAATA
*
66506 AATAATAATAATAATAA-AATAACGATA
1 AATAATAATAAT-ATAATAATAACAATA
66533 AA
1 AA
66535 AAAACCCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (27 bp):
AATAATAATAATATAATAATAACAATA
Found at i:66746 original size:43 final size:44
Alignment explanation
Indices: 66685--67031 Score: 172
Period size: 43 Copynumber: 8.0 Consensus size: 44
66675 TGTTGGGGAC
* * * *
66685 GACACTGCTCATACGTGATGAAGAGTT-TGGGTCGTCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
*
66728 GACACGGCTCCTACGTGATGAAGAGTTCTTGGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
* * * * *** *
66772 GATAACACGGTTCCTACGTGACGAGGACG-GCT-GTTTATCT-ATGGTT
1 G---ACACGGCTCCTACGTGATGAAGA-GTTCTGGGCCATCTAAAGG-T
* * **
66818 GACACGGCTCCTACGTGATGAGGAGATCT-GG---TCT-GGGGAT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGG-T
*
66858 GACACGGCTCATACGTGATGAAGAGTTCT-GGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
* * * * ** *
66901 GATAACATGGTTCCTACGTGATGAGGACG-GCT-GGTTATCT-ATGGTT
1 G---ACACGGCTCCTACGTGATGAAGA-GTTCTGGGCCATCTAAAGG-T
* * **** *
66947 GACACGGCTCCTACGTGATGAAGAGATCT-GGTC-GGGGAA--C
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
*
66987 GACACGGCTCATACGTGATGAAGAGTTCT-GGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
67030 GA
1 GA
67032 TAACACGGTT
Statistics
Matches: 232, Mismatches: 51, Indels: 42
0.71 0.16 0.13
Matches are distributed among these distances:
40 64 0.28
41 2 0.01
42 2 0.01
43 82 0.35
44 16 0.07
45 6 0.03
46 36 0.16
47 23 0.10
48 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (44 bp):
GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
Found at i:66873 original size:40 final size:41
Alignment explanation
Indices: 66817--67017 Score: 158
Period size: 40 Copynumber: 4.8 Consensus size: 41
66807 TATCTATGGT
*
66817 TGACACGGCTCCTACGTGATGAGGAGATCTGG-TCTGGGGA
1 TGACACGGCTCCTACGTGATGAAGAGATCTGGATCTGGGGA
* * *
66857 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAAGAGATCTGG--ATCT---GGGGA
* * * * * ** *
66903 TAACATGGTTCCTACGTGATGAGGACG-GCTGGTTATCTATGGT
1 TGACACGGCTCCTACGTGATGAAGA-GATCTGG--ATCTGGGGA
66946 TGACACGGCTCCTACGTGATGAAGAGATCTGG-TC-GGGGAA
1 TGACACGGCTCCTACGTGATGAAGAGATCTGGATCTGGGG-A
* * *
66986 CGACACGGCTCATACGTGATGAAGAGTTCTGG
1 TGACACGGCTCCTACGTGATGAAGAGATCTGG
67018 CCATCTAAAG
Statistics
Matches: 125, Mismatches: 27, Indels: 18
0.74 0.16 0.11
Matches are distributed among these distances:
39 2 0.02
40 60 0.48
42 1 0.01
43 29 0.23
46 32 0.26
47 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (41 bp):
TGACACGGCTCCTACGTGATGAAGAGATCTGGATCTGGGGA
Found at i:66919 original size:129 final size:129
Alignment explanation
Indices: 66727--67069 Score: 598
Period size: 129 Copynumber: 2.7 Consensus size: 129
66717 CGTCTAAAGG
*
66727 TGACACGGCTCCTACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTG
1 TGACACGGCTCATACGTGATGAAGAGTTC-TGGCCATCTAAAGGTGATAACACGGTTCCTACGTG
* *
66792 ACGAGGACGGCTGTTTATCTATGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCTGGGG-
65 ACGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTC-GGGGA
66856 A
129 A
*
66857 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACATGGTTCCTACGTGA
1 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
*
66922 TGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAA
66 CGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAA
* *
66986 CGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACATGA
1 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
67051 CGAGGACGGCTGGTTATCT
66 CGAGGACGGCTGGTTATCT
67070 CTAGGATAAT
Statistics
Matches: 203, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
128 4 0.02
129 171 0.84
130 28 0.14
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (129 bp):
TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
CGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAA
Found at i:66941 original size:46 final size:46
Alignment explanation
Indices: 66729--67069 Score: 152
Period size: 46 Copynumber: 7.8 Consensus size: 46
66719 TCTAAAGGTG
* ** **
66729 ACACGGCTCCTACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGC-TGGTTATCTAAAGGTGATA
* * * * *
66776 ACACGGTTCCTACGTGACGAGGACG-GCTGTTTATCT-ATGGT--TG
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGTTATCTAAAGGTGATA
* * *
66819 ACACGGCTCCTACGTGATGAGGAGATCTGG---TCT---GGGGATG
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * ** **
66859 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * * *
66905 ACATGGTTCCTACGTGATGAGGACG-GCTGGTTATCT-ATGGT--TG
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGTTATCTAAAGGTGATA
* * *
66948 ACACGGCTCCTACGTGATGAAGAGATCTGG---TC----GGGGA-A
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * ** **
66986 CGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 --ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * *
67034 ACACGGTTCCTACATGACGAGGACG-GCTGGTTATCT
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGTTATCT
67070 CTAGGATAAT
Statistics
Matches: 224, Mismatches: 45, Indels: 51
0.70 0.14 0.16
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
40 62 0.28
42 2 0.01
43 55 0.25
45 8 0.04
46 64 0.29
47 27 0.12
48 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (46 bp):
ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
Found at i:68216 original size:37 final size:37
Alignment explanation
Indices: 68160--68353 Score: 166
Period size: 37 Copynumber: 5.6 Consensus size: 37
68150 GAAACAGATT
*
68160 CAAAGATTTT-TTTCAAAAGAAATTATCTTAAGAGAGA
1 CAAA-ATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
* * * *
68197 CAAAATTTTGTTTCCAAAGAAACAAAC-TCA-A-AG-
1 CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
*
68230 ---ATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
1 CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
* * * *
68264 CAAAATTTTGTTTCCAAAGAAACAAAC-TCA-A-AG-
1 CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
*
68297 ---ATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
1 CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
*
68331 CAAAATTTTGTTTCCAAAGAAAC
1 CAAAATTTTGTTTCAAAAGAAAC
68354 AAACTCAAAG
Statistics
Matches: 120, Mismatches: 22, Indels: 30
0.70 0.13 0.17
Matches are distributed among these distances:
30 40 0.33
31 4 0.03
32 2 0.02
33 4 0.03
34 4 0.03
35 2 0.02
36 9 0.08
37 55 0.46
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (37 bp):
CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
Found at i:68256 original size:67 final size:65
Alignment explanation
Indices: 68097--68385 Score: 397
Period size: 67 Copynumber: 4.4 Consensus size: 65
68087 GAACATATTT
** * * * * * * *
68097 AAAGATTTACTTCAAGAGAGACTATCTCAAGAGATACAAAATTCAT-TTT--AAGAGAAACAGAT
1 AAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATT-TTGTTTCCAA-AGAAACAAAC
68159 TC
64 TC
*
68161 AAAGATTTTTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTC
1 AAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTC
68226 AAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAAC
1 AAAGA-TTTT-TTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAAC
68291 TC
64 TC
68293 AAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAAC
1 AAAGA-TTTT-TTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAAC
68358 TC
64 TC
*
68360 AAAGA-TTTTTTCAAAAGAAACAATCT
1 AAAGATTTTTTTCAAAAGAAACTATCT
68386 CAAAGATTTT
Statistics
Matches: 208, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
63 1 0.00
64 56 0.27
65 18 0.09
66 6 0.03
67 127 0.61
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (65 bp):
AAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTC
Found at i:68374 original size:26 final size:27
Alignment explanation
Indices: 68341--68397 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
68331 CAAAATTTTG
*
68341 TTTCCAAAGAAACAAACTCAAAGATTT
1 TTTCAAAAGAAACAAACTCAAAGATTT
*
68368 TTTCAAAAGAAACAATCTCAAAGATTT
1 TTTCAAAAGAAACAAACTCAAAGATTT
68395 TTT
1 TTT
68398 TTTTTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.32
Consensus pattern (27 bp):
TTTCAAAAGAAACAAACTCAAAGATTT
Found at i:68398 original size:1 final size:1
Alignment explanation
Indices: 68392--68416 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
68382 ATCTCAAAGA
68392 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
68417 ACAAAATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:68549 original size:52 final size:53
Alignment explanation
Indices: 68481--68584 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 53
68471 AAGAAACAAT
68481 CTCAAAGATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
1 CTCAAAGA-TTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
*
68535 CTCAAAGA-TTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCA
68585 AAATAAATAG
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 41 0.84
54 8 0.16
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (53 bp):
CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
Found at i:68627 original size:25 final size:25
Alignment explanation
Indices: 68580--68662 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 25
68570 CAAAACTTTG
* *
68580 TTTCAAAATAAATAGACTCAAAGATT
1 TTTCAAAAGAAACA-ACTCAAAGATT
68606 TTTCAAAAGAAACAACTCAAAGATATT
1 TTTCAAAAGAAACAACTCAAAG--ATT
* *
68633 TATTCAAAAGGAACAAACTCCAAGATT
1 T-TTCAAAAGAAAC-AACTCAAAGATT
68660 TTT
1 TTT
68663 TTCAAGAGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
25 8 0.16
26 14 0.29
27 8 0.16
28 11 0.22
29 8 0.16
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.29
Consensus pattern (25 bp):
TTTCAAAAGAAACAACTCAAAGATT
Found at i:68647 original size:28 final size:28
Alignment explanation
Indices: 68580--68793 Score: 116
Period size: 28 Copynumber: 7.5 Consensus size: 28
68570 CAAAACTTTG
* * *
68580 TTTCAAAATAAATAGACTCAAAG--ATT
1 TTTCAAAAGAAACAAACTCAAAGATATT
68606 TTTCAAAAGAAAC-AACTCAAAGATATT
1 TTTCAAAAGAAACAAACTCAAAGATATT
* * *
68633 TATTCAAAAGGAACAAACTCCAAGATTTT
1 T-TTCAAAAGAAACAAACTCAAAGATATT
* * * **
68662 TTTCAAGAGAAACTGTCTCAAGAGACACAAAAATCGT
1 TTTCAAAAGAAA------C-A-A-ACTCAAAGATATT
* * * *
68699 TTT-AAAATAAATAGACTCACAGAT-TT
1 TTTCAAAAGAAACAAACTCAAAGATATT
68725 TTTCAAAAGAAAC-AACTCAAAGATATT
1 TTTCAAAAGAAACAAACTCAAAGATATT
* * *
68752 TATTCAAAAGGAACAAACTCCAAGATTTT
1 T-TTCAAAAGAAACAAACTCAAAGATATT
*
68781 TTTCAAGAGAAAC
1 TTTCAAAAGAAAC
68794 TGTCTCAAGA
Statistics
Matches: 141, Mismatches: 30, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
25 8 0.06
26 24 0.17
27 21 0.15
28 41 0.29
29 27 0.19
34 1 0.01
35 1 0.01
36 7 0.05
37 11 0.08
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.27
Consensus pattern (28 bp):
TTTCAAAAGAAACAAACTCAAAGATATT
Found at i:68727 original size:119 final size:119
Alignment explanation
Indices: 68551--68945 Score: 648
Period size: 119 Copynumber: 3.3 Consensus size: 119
68541 GATTTTTCAC
* * * * * *
68551 GAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGA-TTTTTCAAAAG
1 GAAACTGTCTCAAGAGACACAAAA-ATCGTTTTAAAATAAATAGACTCACAGATTTTTTCAAAAG
68615 AAACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTTTTCAAGA
65 AAACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTTTTCAAGA
68670 GAAACTGTCTCAAGAGACACAAAAATCGTTTTAAAATAAATAGACTCACAGATTTTTTCAAAAGA
1 GAAACTGTCTCAAGAGACACAAAAATCGTTTTAAAATAAATAGACTCACAGATTTTTTCAAAAGA
68735 AACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTTTTCAAGA
66 AACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTTTTCAAGA
* *
68789 GAAACTGTCTCAAGAGTCACAAAAATCGTTTTAAAATAAATAGACTCACAGATTTTTTCGAAAGA
1 GAAACTGTCTCAAGAGACACAAAAATCGTTTTAAAATAAATAGACTCACAGATTTTTTCAAAAGA
*
68854 AACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTTATTCACGA
66 AACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTT-TTCAAGA
* * *
68909 GAAACTGTCTTTAAGAGATAAAAAAATCGTTTTAAAA
1 GAAACTGTC-TCAAGAGACACAAAAATCGTTTTAAAA
68946 GATTCAAATA
Statistics
Matches: 260, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
118 24 0.09
119 198 0.76
120 15 0.06
121 23 0.09
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.28
Consensus pattern (119 bp):
GAAACTGTCTCAAGAGACACAAAAATCGTTTTAAAATAAATAGACTCACAGATTTTTTCAAAAGA
AACAACTCAAAGATATTTATTCAAAAGGAACAAACTCCAAGATTTTTTTCAAGA
Found at i:68901 original size:29 final size:28
Alignment explanation
Indices: 68832--68905 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 28
68822 AAATAAATAG
* *
68832 ACTCACAGA-TTTT-TTCGAAAGAAACA
1 ACTCAAAGATTTTTATTCAAAAGAAACA
* *
68858 ACTCAAAGATATTTATTCAAAAGGAACAA
1 ACTCAAAGATTTTTATTCAAAAGAAAC-A
*
68887 ACTCCAAGATTTTTATTCA
1 ACTCAAAGATTTTTATTCA
68906 CGAGAAACTG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
26 8 0.21
27 3 0.08
28 10 0.26
29 18 0.46
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (28 bp):
ACTCAAAGATTTTTATTCAAAAGAAACA
Found at i:69263 original size:35 final size:35
Alignment explanation
Indices: 69154--69270 Score: 105
Period size: 35 Copynumber: 3.4 Consensus size: 35
69144 AGAAAATGAT
* * *
69154 GTCTCAAGCGAGACGAAATTTGCTTTT--AGATATA
1 GTCTCAAGCGAGACAAAATTTG-TTTTAGAGAAATC
*** *
69188 GTCTCAAATTAGACAAAATTTGTTTTAGAGAAATT
1 GTCTCAAGCGAGACAAAATTTGTTTTAGAGAAATC
* *
69223 GTCTCAAGCGAGACAAAGTTTGTTTTTGAGAAA-C
1 GTCTCAAGCGAGACAAAATTTGTTTTAGAGAAATC
*
69257 GATCTCAAGTGAGA
1 G-TCTCAAGCGAGA
69271 TCAACTTTGT
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
33 4 0.06
34 19 0.28
35 44 0.66
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (35 bp):
GTCTCAAGCGAGACAAAATTTGTTTTAGAGAAATC
Found at i:69409 original size:105 final size:100
Alignment explanation
Indices: 69223--69454 Score: 261
Period size: 105 Copynumber: 2.3 Consensus size: 100
69213 TAGAGAAATT
* *
69223 GTCTCAAGCGAGACAAAGTTTGTTTTTGAGAAACGATCTCAAGTGAGATCAACTTTGTTTAATGT
1 GTCTCAAGCGAGACAAAATTTG-TTTTGAGAAACAATCTCAAGTGAGATCAACTTTGTTTAATGT
* *
69288 GAAACAAATCCGAAATTTGGATCTCAAAGGGAAAAG
65 GAAACAAATCCAAAATTTGGATCTCAAAGGAAAAAG
* *
69324 GTCTCAAGCGAGACAAAATTTGTTTTGAAAGAAACAA-CAATCTAAGGTGAGATTAATTTTGTTT
1 GTCTCAAGCGAGACAAAATTTGTTTTG--AGAAACAATC--TC-AA-GTGAGATCAACTTTGTTT
* * * * *
69388 -TTAGTGAATCAAATTCAAAATTTGTATCTCAAAGGAAAAAT
60 AAT-GTGAAACAAATCCAAAATTTGGATCTCAAAGGAAAAAG
* *
69429 GTCTCAAGCGAAACACAATTTGTTTT
1 GTCTCAAGCGAGACAAAATTTGTTTT
69455 AAAATTCTCA
Statistics
Matches: 111, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
100 5 0.05
101 22 0.20
102 7 0.06
103 2 0.02
104 3 0.03
105 72 0.65
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (100 bp):
GTCTCAAGCGAGACAAAATTTGTTTTGAGAAACAATCTCAAGTGAGATCAACTTTGTTTAATGTG
AAACAAATCCAAAATTTGGATCTCAAAGGAAAAAG
Found at i:69926 original size:4 final size:4
Alignment explanation
Indices: 69917--69956 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
69907 TGTATCATGG
69917 ATGT ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
69957 ATACTTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
4 32 0.94
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:71150 original size:21 final size:22
Alignment explanation
Indices: 71106--71156 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
71096 TTTGTATGTG
71106 CTCTTTGTCCACTTTCTCTTCTTT
1 CTCTTT-T-CACTTTCTCTTCTTT
* *
71130 TTCTTTTCACTTTGT-TTCTTT
1 CTCTTTTCACTTTCTCTTCTTT
71151 CTCTTT
1 CTCTTT
71157 GCTTTTCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 11 0.46
22 7 0.29
23 1 0.04
24 5 0.21
ACGTcount: A:0.04, C:0.27, G:0.04, T:0.65
Consensus pattern (22 bp):
CTCTTTTCACTTTCTCTTCTTT
Found at i:71834 original size:26 final size:24
Alignment explanation
Indices: 71804--71874 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 24
71794 CAAGGTGGAA
71804 AGAATATTTCAAGGTCTCAAAGAG
1 AGAATATTTCAAGGTCTCAAAGAG
* *
71828 AGGGAATGTTTCAAGG--TCGAA-A-
1 A--GAATATTTCAAGGTCTCAAAGAG
71850 AGAATATTTCAAGGTCTCAAAGAG
1 AGAATATTTCAAGGTCTCAAAGAG
71874 A
1 A
71875 TAGAATGTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
20 12 0.32
22 5 0.14
23 2 0.05
24 6 0.16
26 12 0.32
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (24 bp):
AGAATATTTCAAGGTCTCAAAGAG
Found at i:71859 original size:20 final size:20
Alignment explanation
Indices: 71791--71865 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
71781 AAATACAGTG
*
71791 TTTCAAGGT-GGAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
* *
71810 TTTCAAGGTCTCAAAGAGAGGGAATG
1 TTTCAAGG--TCGAA-A-A--GAATA
71836 TTTCAAGGTCGAAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
71856 TTTCAAGGTC
1 TTTCAAGGTC
71866 TCAAAGAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 8 0.18
20 14 0.32
21 1 0.02
22 2 0.05
23 2 0.05
24 5 0.11
26 12 0.27
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (20 bp):
TTTCAAGGTCGAAAAGAATA
Found at i:71879 original size:26 final size:26
Alignment explanation
Indices: 71801--71880 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 26
71791 TTTCAAGGTG
71801 GAAAGAATATTTCAAGGTCTCAAAGA
1 GAAAGAATATTTCAAGGTCTCAAAGA
** *
71827 GAGGGAATGTTTCAAGG--TC---GA
1 GAAAGAATATTTCAAGGTCTCAAAGA
71848 -AAAGAATATTTCAAGGTCTCAAAGA
1 GAAAGAATATTTCAAGGTCTCAAAGA
*
71873 GATAGAAT
1 GAAAGAAT
71881 GTCAAAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
20 13 0.32
21 2 0.05
22 2 0.05
24 2 0.05
25 2 0.05
26 20 0.49
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (26 bp):
GAAAGAATATTTCAAGGTCTCAAAGA
Found at i:71881 original size:46 final size:45
Alignment explanation
Indices: 71789--71882 Score: 152
Period size: 46 Copynumber: 2.1 Consensus size: 45
71779 AAAAATACAG
* *
71789 TGTTTCAAGGTGGAAAGAATATTTCAAGGTCTCAAAGAGAGGGAA
1 TGTTTCAAGGTGAAAAGAATATTTCAAGGTCTCAAAGAGAGAGAA
*
71834 TGTTTCAAGGTCGAAAAGAATATTTCAAGGTCTCAAAGAGATAGAA
1 TGTTTCAAGGT-GAAAAGAATATTTCAAGGTCTCAAAGAGAGAGAA
71880 TGT
1 TGT
71883 CAAAAATTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
45 11 0.24
46 34 0.76
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.27
Consensus pattern (45 bp):
TGTTTCAAGGTGAAAAGAATATTTCAAGGTCTCAAAGAGAGAGAA
Found at i:77849 original size:25 final size:25
Alignment explanation
Indices: 77815--77863 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
77805 GGCTGGAACA
77815 TTTAGGGTTTGAAACCCTAATCTGG
1 TTTAGGGTTTGAAACCCTAATCTGG
77840 TTTAGGGTTTGAAACCCTAATCTG
1 TTTAGGGTTTGAAACCCTAATCTG
77864 ATGGGTTGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (25 bp):
TTTAGGGTTTGAAACCCTAATCTGG
Found at i:77950 original size:3 final size:3
Alignment explanation
Indices: 77936--77980 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
77926 TTGTAATATG
*
77936 TAA TAT TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
77981 CGATAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:77962 original size:16 final size:16
Alignment explanation
Indices: 77943--77976 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
77933 ATGTAATATT
77943 AATAATAATAATAATA
1 AATAATAATAATAATA
77959 AATAATAATAATAATA
1 AATAATAATAATAATA
77975 AA
1 AA
77977 ATAACGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAATAATAATAATA
Found at i:78215 original size:10 final size:10
Alignment explanation
Indices: 78199--78253 Score: 65
Period size: 10 Copynumber: 5.3 Consensus size: 10
78189 ACGCCAGTCT
78199 ATATATATAC
1 ATATATATAC
*
78209 CTATATATAC
1 ATATATATAC
**
78219 ATACCTATAC
1 ATATATATAC
78229 ATATATATACC
1 ATATATATA-C
78240 TATATATATAC
1 -ATATATATAC
78251 ATA
1 ATA
78254 CACACAGTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
10 26 0.70
11 2 0.05
12 9 0.24
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.38
Consensus pattern (10 bp):
ATATATATAC
Found at i:78217 original size:14 final size:14
Alignment explanation
Indices: 78198--78249 Score: 77
Period size: 14 Copynumber: 3.6 Consensus size: 14
78188 AACGCCAGTC
78198 TATATATATACCTA
1 TATATATATACCTA
*
78212 TATATACATACCTA
1 TATATATATACCTA
78226 TACATATATATACCTA
1 T--ATATATATACCTA
78242 TATATATA
1 TATATATA
78250 CATACACACA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 21 0.62
16 13 0.38
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.40
Consensus pattern (14 bp):
TATATATATACCTA
Found at i:78232 original size:16 final size:15
Alignment explanation
Indices: 78199--78254 Score: 69
Period size: 16 Copynumber: 3.7 Consensus size: 15
78189 ACGCCAGTCT
*
78199 ATATATATACCTAT-
1 ATATACATACCTATA
78213 ATATACATACCTATA
1 ATATACATACCTATA
*
78228 CATATATATACCTATA
1 -ATATACATACCTATA
78244 TATATACATAC
1 -ATATACATAC
78255 ACACAGTACT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
14 13 0.36
16 23 0.64
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATACATACCTATA
Found at i:78451 original size:21 final size:21
Alignment explanation
Indices: 78427--78471 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
78417 AAAGTACGTA
*
78427 TTTAGCATCTAAACTATCAGT
1 TTTAGCACCTAAACTATCAGT
* * *
78448 TTTAGTACCTAAACTTTCATT
1 TTTAGCACCTAAACTATCAGT
78469 TTT
1 TTT
78472 GTTTCAACAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.47
Consensus pattern (21 bp):
TTTAGCACCTAAACTATCAGT
Found at i:80988 original size:2 final size:2
Alignment explanation
Indices: 80977--81008 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
80967 ACTTACATTT
80977 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81009 TAATCAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81934 original size:52 final size:52
Alignment explanation
Indices: 81871--81974 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
81861 AGATCCCTCA
* *
81871 ACTATAGAGTGTTGCTTTATTAAGTCCCTTGACTATTAAAAGTTACAAAATG
1 ACTATAGAGTGTTGCTTTATTAAGTCCCTCGACTATCAAAAGTTACAAAATG
* *
81923 ACTATAGAGTGTTGCTTTGTTGAGTCCCTCGACTATCAAAAGTTACAAAATG
1 ACTATAGAGTGTTGCTTTATTAAGTCCCTCGACTATCAAAAGTTACAAAATG
81975 GTCACCCGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (52 bp):
ACTATAGAGTGTTGCTTTATTAAGTCCCTCGACTATCAAAAGTTACAAAATG
Found at i:84376 original size:21 final size:20
Alignment explanation
Indices: 84350--84401 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
84340 ATTATAATTT
84350 AATTTAAAATATAACTATATG
1 AATTTAAAATATAACTA-ATG
* * *
84371 AATTTAGAAT-TAATTAATT
1 AATTTAAAATATAACTAATG
*
84390 AATATAAAATAT
1 AATTTAAAATAT
84402 TAAAATCTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 10 0.40
20 6 0.24
21 9 0.36
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
AATTTAAAATATAACTAATG
Found at i:94749 original size:7 final size:7
Alignment explanation
Indices: 94734--94777 Score: 79
Period size: 7 Copynumber: 6.3 Consensus size: 7
94724 TTAAAATTTC
94734 AACCCTA
1 AACCCTA
*
94741 AATCCTA
1 AACCCTA
94748 AACCCTA
1 AACCCTA
94755 AACCCTA
1 AACCCTA
94762 AACCCTA
1 AACCCTA
94769 AACCCTA
1 AACCCTA
94776 AA
1 AA
94778 TTTATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCTA
Found at i:102522 original size:6 final size:6
Alignment explanation
Indices: 102511--102535 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
102501 AACCCGAACT
102511 AAACCA AAACCA AAACCA AAACCA A
1 AAACCA AAACCA AAACCA AAACCA A
102536 TTCCAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACCA
Found at i:102567 original size:21 final size:21
Alignment explanation
Indices: 102543--102616 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
102533 CAATTCCAAT
102543 TTAACCAAACCGAAAGTAACC
1 TTAACCAAACCGAAAGTAACC
* **
102564 TTAACCAAATCGAAACCAATTCC
1 TTAACCAAACCGAAAGTAA--CC
102587 AATTTAACCAAACCGAAAGTAACC
1 ---TTAACCAAACCGAAAGTAACC
*
102611 TGAACC
1 TTAACC
102617 GAGAGAAACC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
21 21 0.51
23 2 0.05
24 2 0.05
26 16 0.39
ACGTcount: A:0.46, C:0.28, G:0.08, T:0.18
Consensus pattern (21 bp):
TTAACCAAACCGAAAGTAACC
Found at i:102594 original size:26 final size:26
Alignment explanation
Indices: 102518--102604 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
102508 ACTAAACCAA
*
102518 AACCAAAACCAAAACCAATTCCAATTT
1 AACC-AAACCGAAACCAATTCCAATTT
**
102545 AACCAAACCGAAAGTAA--CC---TT
1 AACCAAACCGAAACCAATTCCAATTT
*
102566 AACCAAATCGAAACCAATTCCAATTT
1 AACCAAACCGAAACCAATTCCAATTT
102592 AACCAAACCGAAA
1 AACCAAACCGAAA
102605 GTAACCTGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
21 16 0.33
23 2 0.04
24 2 0.04
26 24 0.50
27 4 0.08
ACGTcount: A:0.51, C:0.29, G:0.05, T:0.16
Consensus pattern (26 bp):
AACCAAACCGAAACCAATTCCAATTT
Found at i:102840 original size:31 final size:30
Alignment explanation
Indices: 102805--102876 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
102795 GATCGAATAT
* *
102805 TGACCAGACCTAAAAATCAACTGATCCGATA
1 TGACCCGACCT-AAAATCAACCGATCCGATA
*
102836 TGACCCGACCTGAAATCAACCGATCCGATA
1 TGACCCGACCTAAAATCAACCGATCCGATA
102866 TGACCCGACCT
1 TGACCCGACCT
102877 GATACCCGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 28 0.74
31 10 0.26
ACGTcount: A:0.35, C:0.32, G:0.15, T:0.18
Consensus pattern (30 bp):
TGACCCGACCTAAAATCAACCGATCCGATA
Found at i:102854 original size:30 final size:30
Alignment explanation
Indices: 102818--102878 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
102808 CCAGACCTAA
*
102818 AAATCAACTGATCCGATATGACCCGACCTG
1 AAATCAACCGATCCGATATGACCCGACCTG
102848 AAATCAACCGATCCGATATGACCCGACCTG
1 AAATCAACCGATCCGATATGACCCGACCTG
102878 A
1 A
102879 TACCCGAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.18
Consensus pattern (30 bp):
AAATCAACCGATCCGATATGACCCGACCTG
Found at i:102873 original size:15 final size:15
Alignment explanation
Indices: 102827--102873 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
102817 AAAATCAACT
102827 GATCCGATATGACCC
1 GATCCGATATGACCC
* * *
102842 GA-CCTGAAATCAACC
1 GATCC-GATATGACCC
102857 GATCCGATATGACCC
1 GATCCGATATGACCC
102872 GA
1 GA
102874 CCTGATACCC
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 2 0.08
15 20 0.83
16 2 0.08
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.17
Consensus pattern (15 bp):
GATCCGATATGACCC
Found at i:102880 original size:15 final size:15
Alignment explanation
Indices: 102832--102880 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
102822 CAACTGATCC
102832 GATATGACCCGACCT
1 GATATGACCCGACCT
* * *
102847 GAAATCAACCGATCC-
1 GATATGACCCGA-CCT
102862 GATATGACCCGACCT
1 GATATGACCCGACCT
102877 GATA
1 GATA
102881 CCCGAACCGA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 2 0.08
15 22 0.85
16 2 0.08
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (15 bp):
GATATGACCCGACCT
Found at i:105984 original size:28 final size:29
Alignment explanation
Indices: 105931--105989 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 29
105921 ACACTCACCC
*
105931 TTAGTTTTCGTATTAGGGTTTTTAATGGG
1 TTAGTTTTCGTATTAGGGTATTTAATGGG
105960 TTAGTTTTCGTA-TAGGGTATTTAATGGG
1 TTAGTTTTCGTATTAGGGTATTTAATGGG
105988 TT
1 TT
105990 TTATAAGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.19, C:0.03, G:0.27, T:0.51
Consensus pattern (29 bp):
TTAGTTTTCGTATTAGGGTATTTAATGGG
Found at i:117982 original size:15 final size:15
Alignment explanation
Indices: 117962--117992 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
117952 CAACAAATAG
117962 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
117977 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
117992 A
1 A
117993 TTTAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:118169 original size:18 final size:19
Alignment explanation
Indices: 118146--118189 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
118136 CCAGTAATCC
*
118146 TATTCC-CTGGTAATCTTT
1 TATTCCACTGGTAATCTTA
118164 TATTCCCACTGGTAATCTTA
1 TATT-CCACTGGTAATCTTA
118184 TATTCC
1 TATTCC
118190 GTGAACCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 15 0.65
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.45
Consensus pattern (19 bp):
TATTCCACTGGTAATCTTA
Found at i:118177 original size:20 final size:20
Alignment explanation
Indices: 118152--118189 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
118142 ATCCTATTCC
*
118152 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTATATTCCCA
118172 CTGGTAATCTTATATTCC
1 CTGGTAATCTTATATTCC
118190 GTGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.45
Consensus pattern (20 bp):
CTGGTAATCTTATATTCCCA
Found at i:118939 original size:73 final size:73
Alignment explanation
Indices: 118851--119017 Score: 217
Period size: 73 Copynumber: 2.3 Consensus size: 73
118841 TTTGCCTACC
* * * * * * *
118851 AAAACGAATTAAAACTGATAATTTAAGTATTAAACTTTAGGTAGGCTTTGAAAAAATTGAATTTT
1 AAAACGAACTAAAACTGATAATTTAAGTACTAAACTTTAGATAGACTTTAAAAAAATTAAAATTT
118916 TAGATACT
66 TAGATACT
* * *
118924 AAAACGAGCTAAAACTAATAATTTAAGTACTAAACTTTAGATAGATTTTAAAAAAATTAAAATTT
1 AAAACGAACTAAAACTGATAATTTAAGTACTAAACTTTAGATAGACTTTAAAAAAATTAAAATTT
*
118989 TAGGTACT
66 TAGATACT
* *
118997 AAAACAAACAAAAACTGATAA
1 AAAACGAACTAAAACTGATAA
119018 GATAATTTAG
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
73 79 1.00
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (73 bp):
AAAACGAACTAAAACTGATAATTTAAGTACTAAACTTTAGATAGACTTTAAAAAAATTAAAATTT
TAGATACT
Found at i:119592 original size:70 final size:70
Alignment explanation
Indices: 119479--119635 Score: 305
Period size: 70 Copynumber: 2.2 Consensus size: 70
119469 CGGATACATT
119479 TAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAA
1 TAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAA
119544 TCCTA
66 TCCTA
119549 TAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAA
1 TAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAA
119614 TCCTA
66 TCCTA
*
119619 TAAAGTGTCGATACTTT
1 TAAAGTGTCGGTACTTT
119636 TAAAAAATGT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 86 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (70 bp):
TAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAA
TCCTA
Found at i:119691 original size:20 final size:19
Alignment explanation
Indices: 119668--119714 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
119658 CGATATACCA
119668 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
119688 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
119708 GGTAAAA
1 GGTAAAA
119715 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:119871 original size:181 final size:182
Alignment explanation
Indices: 119550--119928 Score: 591
Period size: 181 Copynumber: 2.1 Consensus size: 182
119540 TAAATCCTAT
* *
119550 AAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAT
1 AAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAG
* *
119615 CCTATAAAGTGTCGATACTTTTAAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATG
66 CCTATAAAGTGTCGATACTTTTAAAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATG
119680 ATAAAACCGGTAACAAAATGATAAAACCGGTAAAACGT-TACCGGATATATTG
131 ATAAAACCGGTAACAAAATGATAAAACCGGTAAAA-GTATACCGGATATATTG
* * **
119732 AAAGTGTTGATACTTT-ATATAAGGATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCG
1 AAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAG
* * * *
119796 CCTATAATGTGTCGATACTTTTAAAAAATATATTGATCCACAACGATATAACATGTAAAAATATG
66 CCTATAAAGTGTCGATACTTTTAAAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATG
* * * *
119861 ATAAAACCGGTATCAAAATGATAAAATCGGTCAAATTATACCGGATATATTG
131 ATAAAACCGGTAACAAAATGATAAAACCGGTAAAAGTATACCGGATATATTG
119913 AAAGTGTCGATACTTT
1 AAAGTGTCGATACTTT
119929 CGTAAGTACG
Statistics
Matches: 179, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
180 1 0.01
181 164 0.92
182 14 0.08
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (182 bp):
AAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAG
CCTATAAAGTGTCGATACTTTTAAAAAATATATCGATCCAAAACGATATAACAGGTAAAAATATG
ATAAAACCGGTAACAAAATGATAAAACCGGTAAAAGTATACCGGATATATTG
Found at i:122130 original size:21 final size:21
Alignment explanation
Indices: 122106--122149 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
122096 AAAGACAATC
122106 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
122127 AGAGTCGAAGATATACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
122148 AG
1 AG
122150 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.09, G:0.32, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:122220 original size:31 final size:31
Alignment explanation
Indices: 122182--122242 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
122172 AAATAGATGG
*
122182 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGA
* *
122213 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGG
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGG
122243 TGATATTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (31 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGA
Found at i:124048 original size:19 final size:19
Alignment explanation
Indices: 124024--124072 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
124014 AATATAGGGT
124024 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
124043 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
124062 TAATTTTGTAT
1 TAATTTTGTAT
124073 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:124533 original size:200 final size:200
Alignment explanation
Indices: 124185--125292 Score: 1907
Period size: 200 Copynumber: 5.5 Consensus size: 200
124175 AATTTACAAT
*
124185 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
124250 CGAAAACCAAAAGTATAATGTAATAGGTAAATTTTT-AATCTAATCGGTGCAAGTATACCAGTTT
66 CGAAAACCAAAAGTATAATGTAATAGGT-AATTTTTCAATCTAACCGGTACAAGTATACCGGTTT
* * * *
124314 TATGAGAGAATATGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTGGTCCA
130 TATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
124379 GAATGA
195 GAATGA
* *
124385 ATGGCAAATAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
124450 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTGCAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * *
124515 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTGGTCCAG
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
124580 AATGA
196 AATGA
*
124585 ATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
124650 CGAAAACCAAAAGAATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
124715 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
124780 AATGA
196 AATGA
*
124785 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATTCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
124850 CGAAAACC-AAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
124914 ATGAGAGAATAGGTCTTAATAATGTGTCGATACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
124979 AATGA
196 AATGA
*
124984 ATGGTAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
125049 CGAAAACTAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
125114 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
125179 AATGA
196 AATGA
* *
125184 ATGGCAAACATGGCGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
125249 CAAAAACCAAAAGTATAATGTAATAGGTAATTTTTCGAT-TAACC
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACC
125293 CGCAAGATTG
Statistics
Matches: 871, Mismatches: 35, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
199 202 0.23
200 669 0.77
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:125017 original size:399 final size:400
Alignment explanation
Indices: 124185--125292 Score: 1907
Period size: 399 Copynumber: 2.8 Consensus size: 400
124175 AATTTACAAT
*
124185 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
124250 CGAAAACCAAAAGTATAATGTAATAGGTAAATTTTT-AATCTAATCGGTGCAAGTATACCAGTTT
66 CGAAAACCAAAAGTATAATGTAATAGGT-AATTTTTCAATCTAACCGGTACAAGTATACCGGTTT
* * * *
124314 TATGAGAGAATATGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTGGTCCA
130 TATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCA
* *
124379 GAATGAATGGCAAATAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAA
195 GAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAT
* * *
124444 AAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTGCAAGTATACC
260 AAACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACC
124509 GGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTG
325 GGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTG
124574 GTCCAGAATGA
390 GTCCAGAATGA
*
124585 ATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
124650 CGAAAACCAAAAGAATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
124715 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
*
124780 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATTCATATATAAAAAGTGTCGATCCCATA
196 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
* *
124845 AACATCGAAAACC-AAAGTATAATATAATAGGTAATTTTTCAATCTAACCGGTACAATTATACCG
261 AACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
* * * *
124909 GTTTTATGAGAGAATAGGTCTTAATAATGTGTCGATACTTTTGTAGTTTGTGTCGATATTTTTGG
326 GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTGG
*
124974 TCCATAATGA
391 TCCAGAATGA
*
124984 ATGGTAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
125049 CGAAAACTAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
66 CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
125114 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
* *
125179 AATGAATGGCAAACATGGCGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
196 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
* *
125244 AACATCAAAAACCAAAAGTATAATGTAATAGGTAATTTTTCGAT-TAACC
261 AACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACC
125293 CGCAAGATTG
Statistics
Matches: 670, Mismatches: 36, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
399 392 0.59
400 278 0.41
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (400 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTTAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
AACATCGAAAACCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCG
GTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTCTGG
TCCAGAATGA
Found at i:125721 original size:6 final size:6
Alignment explanation
Indices: 125710--125785 Score: 55
Period size: 6 Copynumber: 12.7 Consensus size: 6
125700 CAAGCGGTCA
* * * *
125710 ATGAAG ATGAAG CT-AACG ATGAAG ATGACG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAA-G ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * * *
125758 ATGATG ACGATG ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGA
125786 TCCAAACAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
5 2 0.03
6 56 0.93
7 2 0.03
ACGTcount: A:0.39, C:0.07, G:0.32, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:125732 original size:12 final size:12
Alignment explanation
Indices: 125710--125782 Score: 74
Period size: 12 Copynumber: 5.8 Consensus size: 12
125700 CAAGCGGTCA
*
125710 ATGAAGATGAAG
1 ATGACGATGAAG
* *
125722 CTAACGATGAAG
1 ATGACGATGAAG
125734 ATGACGATGAAG
1 ATGACGATGAAG
125746 ATGACGATGATGATG
1 ATGACGATGA--A-G
*
125761 ATGACGATGATG
1 ATGACGATGAAG
*
125773 ATGATGATGA
1 ATGACGATGA
125783 TGATCCAAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
12 39 0.76
14 1 0.02
15 11 0.22
ACGTcount: A:0.40, C:0.07, G:0.32, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:125748 original size:18 final size:18
Alignment explanation
Indices: 125710--125782 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
125700 CAAGCGGTCA
* * *
125710 ATGAAGATGAAGCTAACG
1 ATGAAGATGATGATGACG
* *
125728 ATGAAGATGACGATGAAG
1 ATGAAGATGATGATGACG
125746 ATGACGATGATGATGATGACG
1 ATGA--A-GATGATGATGACG
*
125767 ATGATGATGATGATGA
1 ATGAAGATGATGATGA
125783 TGATCCAAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
18 29 0.64
20 1 0.02
21 15 0.33
ACGTcount: A:0.40, C:0.07, G:0.32, T:0.22
Consensus pattern (18 bp):
ATGAAGATGATGATGACG
Found at i:125759 original size:3 final size:3
Alignment explanation
Indices: 125727--125786 Score: 75
Period size: 3 Copynumber: 20.0 Consensus size: 3
125717 TGAAGCTAAC
* * * * *
125727 GAT GAA GAT GAC GAT GAA GAT GAC GAT GAT GAT GAT GAC GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
125775 GAT GAT GAT GAT
1 GAT GAT GAT GAT
125787 CCAAACAAGT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.37, C:0.05, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:127309 original size:183 final size:183
Alignment explanation
Indices: 126996--127751 Score: 1368
Period size: 183 Copynumber: 4.1 Consensus size: 183
126986 CAAAGTTTTC
* * * *
126996 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCATATTGGAAGAAAAATATGTCGATACATTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
127061 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
* *
127126 AACCGGTATAAATATACCGGTTTTATGAGCGAACATGTCTATAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAACAGGTCTACAACCTATATCG
127179 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
127244 AAAAAAGTGTCGACATTTATACATTGGAACCCAGAATTATAATGTAATAGATAATTTTATAATAT
66 AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
127309 AACCGGTATAAATATACCGATTTTATGAGCGAACAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAACAGGTCTACAACCTATATCG
*
127362 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
127427 AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
* *
127492 AACCGGTATAAATATACCAGTTTTATGAGCGAACAGGTTTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAACAGGTCTACAACCTATATCG
*
127545 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGGTACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
127610 AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
127675 AGCCGGTATAAATATACCGGTTTTATGAGCGAACAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAACAGGTCTACAACCTATATCG
127728 ACACTTTTTAATATTGTGTCGGTA
1 ACACTTTTTAATATTGTGTCGGTA
127752 ATTTTAAGTA
Statistics
Matches: 551, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 551 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
AAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAACAGGTCTACAACCTATATCG
Found at i:130562 original size:23 final size:23
Alignment explanation
Indices: 130531--130603 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
130521 ATAGGTAAAA
*
130531 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
130554 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
130577 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
130600 ATAT
1 ATAT
130604 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:131000 original size:23 final size:23
Alignment explanation
Indices: 130969--131039 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
130959 ATAGGTAAAA
*
130969 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
130992 ATATAATGTAATAGGTAGCG-TT
1 ATATAATGTAATAGGTAGCGCTT
*
131014 -TATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
131036 ATAT
1 ATAT
131040 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.41
22 4 0.09
23 22 0.50
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:131019 original size:21 final size:21
Alignment explanation
Indices: 130974--131044 Score: 97
Period size: 21 Copynumber: 3.3 Consensus size: 21
130964 TAAAAATATG
130974 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGCG-TT-TATA
130997 ATGTAATAGGTAGCGTTTATA
1 ATGTAATAGGTAGCGTTTATA
* *
131018 ATGTAATAGGTAGTGCTTATA
1 ATGTAATAGGTAGCGTTTATA
*
131039 TTGTAA
1 ATGTAA
131045 AGTATCTATC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
21 28 0.62
22 2 0.04
23 15 0.33
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (21 bp):
ATGTAATAGGTAGCGTTTATA
Found at i:131090 original size:436 final size:440
Alignment explanation
Indices: 130338--131681 Score: 1672
Period size: 463 Copynumber: 3.0 Consensus size: 440
130328 GTTAAATTTA
*
130338 AATACTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTAT
1 AATACTAAATAATATTTTTTAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTAT
* * * *
130403 TAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATA
66 TAAATTAATATTGTATGTGG-AAACATGAAACATTATTAAAAAAAATTGAAATATGAATTACATA
* *
130468 ACTTTAAAAAGGTATTGATCTTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAAT
130 ACTTTAAAAAAGTATTGATCATTTTTATAAAAAGTATGGACACTTTC-A-ATAATAGGTAAAAAT
*
130533 ATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
193 ATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGTGC
130598 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATT
258 TTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATT
130663 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGAT
323 AATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGAT
130728 TTATTTTTTATGTTAC-GTATATATTATCATTAAATT-AAATAATAAACATAT
388 TTATTTTTTATGTTACGGTATATATTATCATTAAATTAAAATAATAAACATAT
130779 AATACTAAATAAATATTTATTTAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATT
1 AATACTAAAT-AATATTT-TTTAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATT
130844 ATTAAATTAATATTGTATGTGGAAACATGAAACATTATTAAAAAAAATTGAAATAT-AATTACAT
64 ATTAAATTAATATTGTATGTGGAAACATGAAACATTATTAAAAAAAATTGAAATATGAATTACAT
* *
130908 AACTTTAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT-ATAGGTAAAAATA
129 AACTTTAAAAAAGTATTGATCATTTTTATAAAAAGTATGGACACTTTCAATAATAGGTAAAAATA
130972 TGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG-TT-TATAATGTAATAGGTAGTGCT
194 TGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGTGCT
131035 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATTA
259 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATTA
131100 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATT
324 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATT
131165 TATTTTTTATGTTACGGTATATATTATCATTAAATTAAAAATAATAAACATAT
389 TATTTTTTATGTTACGGTATATATTATCATTAAATT-AAAATAATAAACATAT
* * * * * * *
131218 ATATACATTTTATTATTATCTTTGGTTAATATTGTTAAATTTA-AATTCTAAAT-ATTATTTTAT
1 A-ATAC---TAAATAATAT-TTT--TTAA-AATATCAAA---ACAA-TC-AAATAATT-TTTTGT
** * ** * * * * *
131281 AAAATATCAAAACAATAAAATAAT-TT-T-T-TGTATAA-ATG-AA-ATTATTAAATTAATATTG
52 GTAA-ATGAAATTATTAAATTAATATTGTATGTGGA-AACATGAAACATTATTAAA-AAAAATTG
* * * * * *
131339 -TATGTGGAA-AACATGAAACACTATTAAAAAA-AATTGAAACATAAATTACATAACTTTAAAAA
114 AAATAT-GAATTACAT---A-ACT-TTAAAAAAGTATTG-ATCAT---TT---T---TAT-AAAA
* * * * * * * * * *** *
131401 AGTATCGATC-CTTT-TATAAAAAGTATGGACACTTTCAATATAATAGGTA---AAAATATGATG
162 AGTATGGA-CACTTTCAATAATAGGTA---AAAATAT-GATGTAATAGGTAGCGCTTATATAATG
131461 TAATAGGTAGCGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
222 TAATAGGTAGCGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
* *
131526 AAAAGTGTTCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
287 AAAAGTGTCCATACTTATTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
*
131591 AAGATATTAATTTAGTAATTATATGTATCTAATGATTTATTTTTTATGTTACGGTATATATTATC
352 AAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTATGTTACGGTATATATTATC
131656 ATTAAATTAAAAATAATAAACATAT
417 ATTAAATT-AAAATAATAAACATAT
131681 A
1 A
131682 TATATTATAT
Statistics
Matches: 807, Mismatches: 48, Indels: 74
0.87 0.05 0.08
Matches are distributed among these distances:
436 166 0.21
437 22 0.03
438 53 0.07
439 18 0.02
440 5 0.01
441 63 0.08
442 44 0.05
443 71 0.09
444 16 0.02
445 18 0.02
446 8 0.01
447 5 0.01
448 8 0.01
449 19 0.02
450 25 0.03
453 2 0.00
456 1 0.00
459 4 0.00
460 20 0.02
461 20 0.02
462 2 0.00
463 206 0.26
464 11 0.01
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.40
Consensus pattern (440 bp):
AATACTAAATAATATTTTTTAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTAT
TAAATTAATATTGTATGTGGAAACATGAAACATTATTAAAAAAAATTGAAATATGAATTACATAA
CTTTAAAAAAGTATTGATCATTTTTATAAAAAGTATGGACACTTTCAATAATAGGTAAAAATATG
ATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGTGCTTA
TATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATTAAT
TTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTA
TTTTTTATGTTACGGTATATATTATCATTAAATTAAAATAATAAACATAT
Found at i:131484 original size:23 final size:23
Alignment explanation
Indices: 131453--131502 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
131443 ATAGGTAAAA
*
131453 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
131476 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
131499 ATAT
1 ATAT
131503 TGTAAAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:133553 original size:2 final size:2
Alignment explanation
Indices: 133546--133576 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
133536 CCAAGAGAAT
*
133546 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
133577 TTGAGTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:137914 original size:17 final size:17
Alignment explanation
Indices: 137892--137940 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
137882 CATAATTATT
137892 TTAAATATTTTAAAAAA
1 TTAAATATTTTAAAAAA
137909 TTAAAT-TTTATAAAAAA
1 TTAAATATTT-TAAAAAA
* * *
137926 ATATATATTTGAAAA
1 TTAAATATTTTAAAA
137941 CTAATTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 3 0.11
17 21 0.78
18 3 0.11
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
TTAAATATTTTAAAAAA
Found at i:138696 original size:182 final size:182
Alignment explanation
Indices: 138389--138717 Score: 586
Period size: 182 Copynumber: 1.8 Consensus size: 182
138379 ATATCTCAAT
* * *
138389 TAACAAGTGACTATTTTGTAACTTTTAATAATAATGATTTAACAAATCGACGAATCAACATCATA
1 TAACAAGTGACTATTTTGTAACTTTTAATAATAATGACTTAACAAATCAACAAATCAACATCATA
*
138454 TAATTTTTATTAGTCGAGAGATATAATAAATTAACATCTTATAATCGGAGACTATTTATGTACTT
66 TAATTTTTATTAGTCGAGAGATATAATAAATTAACATCCTATAATCGGAGACTATTTATGTACTT
138519 TAATCTTAATATTTTATCAATTATAAAATATCATTCATAAATTTATATTTTG
131 TAATCTTAATATTTTATCAATTATAAAATATCATTCATAAATTTATATTTTG
*
138571 TAACAAGTGACTATTTTGTAACTTTTAATAGTAATGACTTAACAAATCAACAAATCAACATCATA
1 TAACAAGTGACTATTTTGTAACTTTTAATAATAATGACTTAACAAATCAACAAATCAACATCATA
*
138636 TAATTTTTATTAGTCGAGAGATTTAATAAATTAACATCCTATAATCGGAGACTATTTATGTACTT
66 TAATTTTTATTAGTCGAGAGATATAATAAATTAACATCCTATAATCGGAGACTATTTATGTACTT
**
138701 TAATCTTTTTATTTTAT
131 TAATCTTAATATTTTAT
138718 ATTAATATTT
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
182 139 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (182 bp):
TAACAAGTGACTATTTTGTAACTTTTAATAATAATGACTTAACAAATCAACAAATCAACATCATA
TAATTTTTATTAGTCGAGAGATATAATAAATTAACATCCTATAATCGGAGACTATTTATGTACTT
TAATCTTAATATTTTATCAATTATAAAATATCATTCATAAATTTATATTTTG
Found at i:139385 original size:14 final size:14
Alignment explanation
Indices: 139368--139407 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
139358 CATCCGAGGC
139368 CATCCGACCGAGAG
1 CATCCGACCGAGAG
* *
139382 CATCCGATCAAGAG
1 CATCCGACCGAGAG
*
139396 CATCCGAGCGAG
1 CATCCGACCGAG
139408 CTATGCGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.30, C:0.33, G:0.28, T:0.10
Consensus pattern (14 bp):
CATCCGACCGAGAG
Found at i:139498 original size:29 final size:29
Alignment explanation
Indices: 139456--139547 Score: 139
Period size: 29 Copynumber: 3.2 Consensus size: 29
139446 GGAGCAGGAG
*
139456 GGAGTGCATGGCGACCTACAAGGTCAGCA
1 GGAGTGCATGGCGACCTACAAGGTCACCA
*
139485 GGAGTGTATGGCGACCTACAAGGTCACCA
1 GGAGTGCATGGCGACCTACAAGGTCACCA
* * *
139514 GGAGTGCATGGCGACTTACAAGGTCGCCC
1 GGAGTGCATGGCGACCTACAAGGTCACCA
139543 GGAGT
1 GGAGT
139548 AGCGACCTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.25, C:0.24, G:0.35, T:0.16
Consensus pattern (29 bp):
GGAGTGCATGGCGACCTACAAGGTCACCA
Found at i:142476 original size:13 final size:13
Alignment explanation
Indices: 142458--142484 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
142448 CATAGTTGAA
142458 CAGTCTTCATATG
1 CAGTCTTCATATG
142471 CAGTCTTCATATG
1 CAGTCTTCATATG
142484 C
1 C
142485 GCGTCTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:142871 original size:2 final size:2
Alignment explanation
Indices: 142864--142890 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
142854 CTAAATCCTA
142864 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
142891 ATTTTTCGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:143231 original size:23 final size:23
Alignment explanation
Indices: 143183--143249 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
143173 AAAATATTTA
*
143183 TGTCTTTGTGACATG-TTA--TT
1 TGTCTTTGTGACACGTTTATCTT
143203 TGTCTTTGTGACACGTTTATCTT
1 TGTCTTTGTGACACGTTTATCTT
* *
143226 TGTCTTTATGACACATTTATCTT
1 TGTCTTTGTGACACGTTTATCTT
143249 T
1 T
143250 ATTTTTTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
20 14 0.34
21 3 0.07
23 24 0.59
ACGTcount: A:0.16, C:0.15, G:0.15, T:0.54
Consensus pattern (23 bp):
TGTCTTTGTGACACGTTTATCTT
Found at i:146110 original size:59 final size:60
Alignment explanation
Indices: 146037--146169 Score: 153
Period size: 60 Copynumber: 2.2 Consensus size: 60
146027 ATATTTGGGT
**
146037 AAAGTATAC-AAATGATC-CCCGACTATAGGGTACTACTTTATTAAGTCAATCGACTATTA
1 AAAGT-TACAAAATGATCTCCCGACTATAGAATACTACTTTATTAAGTCAATCGACTATTA
* ** ** * **
146096 AAAGTTACAAAATGATCTTCCGACTATAGAATGTTGTTTTGTTAAGTCCTTCGACTATTA
1 AAAGTTACAAAATGATCTCCCGACTATAGAATACTACTTTATTAAGTCAATCGACTATTA
146156 AAAGTTACAAAATG
1 AAAGTTACAAAATG
146170 GTCACATAAC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
58 3 0.05
59 13 0.21
60 46 0.74
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (60 bp):
AAAGTTACAAAATGATCTCCCGACTATAGAATACTACTTTATTAAGTCAATCGACTATTA
Found at i:157985 original size:3 final size:3
Alignment explanation
Indices: 157977--158001 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
157967 GAATTGGGTT
157977 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
158002 ATCCTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:160739 original size:228 final size:227
Alignment explanation
Indices: 160334--160781 Score: 767
Period size: 228 Copynumber: 2.0 Consensus size: 227
160324 GTAAATTATC
* * *
160334 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
*
160399 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAAACAATCAAATAATTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAAACAATCAAATAATATT
160464 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
131 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
160529 GAAACATAAATTACATAACTTTCAAAAAAGTATA
196 GAAACATAAATTACAT-ACTTT-AAAAAAGTATA
*
160563 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
160628 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTAT-AAATATC-AAAACAATCAAAT-ATAA
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAAACAATCAAATAAT-A
* *
160690 TTTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAA
129 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
160755 TTGAAACATAAATTACATACTTTAAAA
194 TTGAAACATAAATTACATACTTTAAAA
160782 GCAGTTTTAA
Statistics
Matches: 209, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
226 4 0.02
227 7 0.03
228 94 0.45
229 43 0.21
230 61 0.29
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAAACAATCAAATAATATT
TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
GAAACATAAATTACATACTTTAAAAAAGTATA
Found at i:160870 original size:20 final size:19
Alignment explanation
Indices: 160847--160892 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
160837 CGATATACCA
160847 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
160867 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
160887 GGTAAA
1 GGTAAA
160893 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:161035 original size:20 final size:20
Alignment explanation
Indices: 161012--161059 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
161002 CGATATAACA
*
161012 GGTAAAATTATGATAAAACC
1 GGTAAAATAATGATAAAACC
161032 GGTAACAA-AATGATAAAACC
1 GGTAA-AATAATGATAAAACC
161052 GGTAAAAT
1 GGTAAAAT
161060 GATACCGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (20 bp):
GGTAAAATAATGATAAAACC
Found at i:163335 original size:21 final size:21
Alignment explanation
Indices: 163288--163352 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
163278 AAGACAATCA
* *
163288 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
163310 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
163330 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
163351 AG
1 AG
163353 GAATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:163447 original size:32 final size:33
Alignment explanation
Indices: 163386--163450 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
163376 AAATAGATGG
*
163386 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
*
163419 AGTGGTGAAAGAAGTTG-GGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
163451 TATTAAGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.47
33 16 0.53
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:165246 original size:19 final size:19
Alignment explanation
Indices: 165222--165270 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
165212 AATGTCGAGT
165222 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
165241 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
165260 TATTTTTGTAT
1 TAATTTTGTAT
165271 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:165735 original size:199 final size:198
Alignment explanation
Indices: 165389--165885 Score: 949
Period size: 199 Copynumber: 2.5 Consensus size: 198
165379 CAATATGGCC
* *
165389 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
165454 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
165519 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
165584 TGGAA
195 TGG-A
*
165589 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCCAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
165654 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
165719 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
165784 GGA
196 GGA
165787 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
165852 CAAAAGTATAATGTAATATGTAATTTTTCAATCT
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCT
165886 TGTAACACCC
Statistics
Matches: 293, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
198 99 0.34
199 160 0.55
200 34 0.12
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.30
Consensus pattern (198 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGA
Found at i:166649 original size:31 final size:31
Alignment explanation
Indices: 166611--166735 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
166601 CCCGAAGGAC
* *
166611 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
166642 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
166673 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
166704 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
166735 C
1 C
166736 CCTCGACCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:166939 original size:23 final size:24
Alignment explanation
Indices: 166913--166959 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
166903 ATATACTTGT
* *
166913 TTTCACGTATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
166936 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
166960 CAGGCCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:167500 original size:21 final size:21
Alignment explanation
Indices: 167470--167513 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
167460 ATTCTGTCGT
* *
167470 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
167491 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
167512 TT
1 TT
167514 ACCCAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:170547 original size:31 final size:31
Alignment explanation
Indices: 170509--170633 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
170499 CCCGAAGGAC
* *
170509 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
170540 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
170571 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
170602 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
170633 C
1 C
170634 CCTCGACCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:171397 original size:21 final size:21
Alignment explanation
Indices: 171367--171410 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
171357 ATTCTGTCGT
* *
171367 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
171388 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
171409 TT
1 TT
171411 ACCCAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:172447 original size:198 final size:198
Alignment explanation
Indices: 172109--173380 Score: 2467
Period size: 198 Copynumber: 6.4 Consensus size: 198
172099 GGATGTTACA
* *
172109 AATCTAACCGGTACAATTATACCAGTTTTATGAGAGAATATGTCTAAATAATGTGTCAACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
172174 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
66 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
172239 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
131 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
172304 TTC
196 TTC
*
172307 AATCTAACCGGTACAATTACACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
172372 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
66 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
172437 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTATAATGTAATATGTAATTT
131 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
172501 TTC
196 TTC
*
172504 AATCTAACCGGTATAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
172569 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
66 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
172634 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
131 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
172699 TTC
196 TTC
172702 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
172767 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAAACAAGGTGCACCCATAAAGTGTCG
66 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGG-AAACAAGGTGCACCCATAAAGTGTCG
*
172832 ATCCATATAT-AAAAGTGTCGATCCCAAAATCATCCAACCCAAAAGTATAATGTAATATGTAATT
130 ATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATT
172896 TTTC
195 TTTC
172900 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
172965 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
66 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
173030 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
131 TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
173095 TTC
196 TTC
173098 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
173163 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAAACAAGGTGCACCCATAAAGTGTCG
66 TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGG-AAACAAGGTGCACCCATAAAGTGTCG
173228 ATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATT
130 ATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATT
173293 TTTC
195 TTTC
173297 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
1 AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
173362 TATAGTTTGTGTCGATACT
66 TATAGTTTGTGTCGATACT
173381 AATTTAAATA
Statistics
Matches: 1062, Mismatches: 8, Indels: 7
0.99 0.01 0.01
Matches are distributed among these distances:
197 231 0.22
198 616 0.58
199 215 0.20
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (198 bp):
AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAA
TATAGTTTGTGTCGATACTTTTTTCCCAGAATGAATGGAAACAAGGTGCACCCATAAAGTGTCGA
TCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTT
TTC
Found at i:174823 original size:3 final size:3
Alignment explanation
Indices: 174815--174886 Score: 72
Period size: 3 Copynumber: 24.0 Consensus size: 3
174805 TCTTTTAACA
* * * ** * *
174815 GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT GAC GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
174863 GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT
174887 CCAAACAAGT
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.35, C:0.06, G:0.35, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:176421 original size:183 final size:183
Alignment explanation
Indices: 176086--176922 Score: 1561
Period size: 183 Copynumber: 4.6 Consensus size: 183
176076 CAAAGTTTTC
* * * * *
176086 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
* *
176151 AAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
66 AAAAAAGTGTCGACATT---TACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
176214 TATAACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
128 TATAACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
176270 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
176335 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
176400 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
176453 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
176518 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
176583 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
*
176636 ACACTTTCTAATATTGTGTCGGTAGTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
176701 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
176766 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
176819 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
176884 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTA
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTA
176923 AGGTTATCTT
Statistics
Matches: 642, Mismatches: 9, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
183 567 0.88
184 72 0.11
186 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
Found at i:180039 original size:20 final size:22
Alignment explanation
Indices: 180014--180089 Score: 68
Period size: 23 Copynumber: 3.5 Consensus size: 22
180004 ACTTTCAATA
*
180014 TAATAGGTA-ACC-ATATGATG
1 TAATAGGTAGACCTATATAATG
*
180034 TAATAGGTAGCCCTTATATAATG
1 TAATAGGTAGACC-TATATAATG
**
180057 TAATAGGTATCG-TTTATATAATG
1 TAATAGGTA--GACCTATATAATG
180080 TAATAGGTAG
1 TAATAGGTAG
180090 TGGTTATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
20 9 0.19
21 3 0.06
23 34 0.72
25 1 0.02
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.36
Consensus pattern (22 bp):
TAATAGGTAGACCTATATAATG
Found at i:180057 original size:23 final size:23
Alignment explanation
Indices: 180026--180089 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
180016 ATAGGTAACC
*
180026 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
180049 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
180072 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
180090 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:180096 original size:23 final size:23
Alignment explanation
Indices: 180026--180098 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
180016 ATAGGTAACC
* **
180026 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
180049 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
180072 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
180095 ATAT
1 ATAT
180099 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:180512 original size:22 final size:23
Alignment explanation
Indices: 180456--180518 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
180446 ATAGGTAAAC
*
180456 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
180479 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
180502 ATAT-ATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
180519 TGGTTATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 12 0.34
23 23 0.66
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:180525 original size:22 final size:23
Alignment explanation
Indices: 180456--180527 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
180446 ATAGGTAAAC
* **
180456 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
180479 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
180502 ATAT-ATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
180524 ATAT
1 ATAT
180528 TGTAAAGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
22 19 0.45
23 23 0.55
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:180915 original size:23 final size:23
Alignment explanation
Indices: 180884--180946 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
180874 ATAGGTAAAC
*
180884 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* * **
180907 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
180930 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
180947 GTGGTTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:180954 original size:23 final size:23
Alignment explanation
Indices: 180884--180956 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
180874 ATAGGTAAAC
* * **
180884 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
* *
180907 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
180930 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
180953 ATAT
1 ATAT
180957 TGTAAAGTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 41 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:181346 original size:23 final size:23
Alignment explanation
Indices: 181315--181378 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
181305 ATAGGTAAAC
*
181315 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
181338 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
181361 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
181379 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Done.