genome.fa.s6522.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006522.1 Hibiscus syriacus cultivar Beakdansim tig00015896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204148

Tables:   1   2   

This is table  2  of  2  ( 138 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181315--181387	23	3.2	23	82	7	85	34	5	20	39	1.76
179927--183345	430	7.9	431	98	0	6692	39	8	13	39	1.74
181745--181808	23	2.8	23	82	0	83	35	6	18	39	1.76
181745--181817	23	3.2	23	78	7	76	34	5	19	41	1.74
181963--182029	30	2.2	30	82	10	75	52	4	0	43	1.21
182175--182238	23	2.8	23	87	0	92	35	6	20	37	1.78
182175--182247	23	3.2	23	82	7	85	34	5	20	39	1.76
182605--182677	23	3.2	24	86	7	98	34	4	20	41	1.72
183036--183099	23	2.8	23	87	0	92	35	6	20	37	1.78
183036--183108	23	3.2	23	82	7	85	34	5	20	39	1.76
183377--183427	25	2.0	25	92	0	84	33	7	19	39	1.81
183676--183712	18	2.1	18	89	0	56	32	5	10	51	1.60
183668--183714	24	2.0	24	86	0	67	34	4	14	46	1.64
183971--184095	39	3.2	39	95	1	216	48	20	13	18	1.81
184499--184561	23	2.7	23	90	0	90	36	7	17	38	1.79
184499--184571	23	3.2	23	86	3	85	34	6	19	39	1.78
203871--203908	2	19.5	2	94	5	69	47	0	0	52	1.00
203869--203908	21	1.9	21	100	0	80	47	0	0	52	1.00

Tables:   1   2

The End!