genome.fa.s6525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006525.1 Hibiscus syriacus cultivar Beakdansim tig00015902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96821

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364--1388	13	1.9	13	100	0	50	48	0	0	52	1.00
1470--1524	25	2.2	25	80	0	65	32	14	5	47	1.67
2587--2664	29	2.8	28	84	5	104	44	33	0	21	1.53
23632--23683	19	2.8	19	88	8	72	5	19	3	71	1.22
23638--23699	19	3.4	18	82	8	56	4	12	4	77	1.09
24205--24279	25	3.0	25	100	0	150	28	16	20	36	1.93
24343--24391	23	2.1	23	96	0	89	63	4	4	28	1.31
24626--24820	46	4.4	45	72	14	147	26	19	29	24	1.98
24672--24874	43	4.7	43	72	12	148	24	19	30	25	1.98
24584--24889	129	2.4	129	93	1	515	24	18	31	25	1.98
24584--24906	40	7.6	41	70	17	173	24	18	30	25	1.98
24952--25013	28	2.2	28	80	5	72	48	12	14	24	1.79
25156--25246	37	2.4	38	83	5	114	36	10	14	38	1.81
25940--26170	64	3.6	64	84	5	234	45	12	12	29	1.78
26054--26154	30	3.1	30	69	17	94	42	13	10	32	1.80
25959--26155	67	3.0	66	86	5	258	44	12	12	30	1.80
26131--26181	27	1.9	26	92	4	84	50	11	7	29	1.67
26116--26182	27	2.4	27	80	11	82	44	13	7	34	1.72
26269--26351	26	3.1	25	81	13	94	48	13	8	30	1.72
26269--26353	29	3.1	27	85	9	102	47	12	8	31	1.72
26612--26730	36	3.4	36	79	9	113	35	12	21	30	1.91
26646--26730	36	2.4	36	86	4	118	35	11	22	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26682--26921	105	2.3	104	85	6	310	38	11	20	29	1.88
26888--27024	36	3.8	36	82	5	170	35	13	19	31	1.90
26888--27022	71	1.9	72	87	4	202	34	13	20	31	1.91
27377--27401	10	2.5	10	100	0	50	20	0	28	52	1.47
28578--28623	12	3.9	12	94	2	76	6	10	13	69	1.35
28571--28630	12	4.9	12	85	6	68	5	11	13	70	1.33
29237--29330	46	2.1	45	85	2	125	36	9	26	27	1.88
30519--30581	32	2.0	32	96	3	119	60	9	17	12	1.58
30778--30841	2	32.0	2	100	0	128	50	0	0	50	1.00
33704--33756	18	2.8	19	86	11	65	5	18	3	71	1.21
33708--33772	19	3.6	18	82	10	62	4	13	4	76	1.10
34279--34353	25	3.0	25	100	0	150	28	16	20	36	1.93
34417--34465	23	2.1	23	96	0	89	63	4	4	28	1.31
40995--41049	22	2.5	22	80	14	60	41	12	1	43	1.53
54922--54959	2	19.0	2	100	0	76	50	0	0	50	1.00
71492--71539	24	2.0	24	84	8	62	31	14	10	43	1.79
72352--72394	18	2.5	17	76	3	50	72	9	2	16	1.21
81490--83108	4	408.2	4	98	1	3140	25	24	0	49	1.50
91085--91118	14	2.5	13	90	4	50	26	0	26	47	1.53
91086--91118	13	2.4	14	90	5	50	27	0	27	45	1.54
94870--94995	39	3.2	39	86	9	152	39	23	16	20	1.92
94890--95015	20	6.3	20	82	7	150	42	23	14	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95397--95447	20	2.5	21	90	3	77	17	19	17	45	1.86

Tables:   1

The End!