genome.fa.s6528.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006528.1 Hibiscus syriacus cultivar Beakdansim tig00015909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59178

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2367--2419	27	2.0	26	96	3	97	37	18	18	24	1.94
6150--6176	12	2.2	12	100	0	54	29	7	0	62	1.22
7161--7189	2	14.5	2	100	0	58	0	51	0	48	1.00
9101--9132	6	5.3	6	100	0	64	50	34	15	0	1.45
16548--16695	71	2.1	72	85	1	208	37	17	16	27	1.92
18617--18774	30	5.2	30	90	3	219	37	19	18	23	1.94
18617--18775	61	2.6	61	85	4	223	37	19	19	23	1.94
21410--21441	9	3.6	9	100	0	64	43	9	12	34	1.75
22611--22646	18	2.0	18	89	10	56	44	25	5	25	1.75
23422--23471	26	1.9	26	88	8	75	38	20	6	36	1.77
25430--25527	30	3.2	30	80	5	81	38	20	20	20	1.93
25446--25579	30	4.5	30	79	3	153	34	20	19	26	1.96
25446--25573	60	2.1	60	87	5	179	34	20	20	25	1.96
25993--26042	26	1.9	26	88	8	75	38	20	6	36	1.77
27329--27357	2	14.5	2	100	0	58	51	0	0	48	1.00
30496--30521	2	13.0	2	100	0	52	50	0	0	50	1.00
30536--30568	16	1.9	18	88	11	52	24	0	9	66	1.20
30647--30681	11	3.0	12	87	8	54	42	0	0	57	0.99
31520--31558	19	2.1	19	90	0	60	20	41	15	23	1.90
31500--31667	64	2.6	64	81	7	191	30	26	15	27	1.96
31636--31684	19	2.6	19	84	9	57	24	30	18	26	1.98
40702--40754	19	2.7	19	85	2	61	39	33	7	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40766--40804	20	2.0	20	89	0	60	41	17	15	25	1.89
40864--40911	20	2.4	19	89	6	69	29	20	12	37	1.90
41847--41929	24	3.5	24	96	0	148	20	21	20	37	1.95
45957--46032	21	3.7	20	78	3	80	22	19	34	23	1.97
46177--46230	4	13.5	4	84	0	72	68	3	1	25	1.16
48400--48457	22	2.6	22	86	0	80	22	20	39	17	1.92
48561--48598	20	2.0	20	89	5	60	47	13	13	26	1.79
48569--48608	19	2.0	20	85	4	55	40	17	17	25	1.91
48605--48674	20	3.5	20	84	2	77	25	11	22	40	1.88
48620--48677	20	2.9	20	92	0	89	25	10	27	36	1.89
51738--51771	17	1.9	18	88	5	52	41	0	0	58	0.98
52523--52598	31	2.5	31	80	0	89	31	10	13	44	1.77
52715--52770	20	2.8	19	82	12	67	51	3	5	39	1.42
53727--53788	18	3.5	18	68	4	63	17	11	11	59	1.60
54202--54254	21	2.5	21	81	6	72	20	24	18	35	1.95
54246--54378	20	6.6	20	79	6	151	39	18	20	21	1.92
54241--54378	41	3.4	40	78	12	131	39	17	19	23	1.92
54949--54993	19	2.4	19	84	0	63	46	26	15	11	1.79
54989--55144	19	9.1	19	65	26	80	12	23	20	42	1.86
54994--55119	31	4.0	31	93	3	180	11	23	22	42	1.87
55098--55144	20	2.3	20	79	13	60	12	25	14	46	1.80
57221--57309	42	2.1	42	80	0	106	21	38	16	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58665--58700	14	2.6	14	95	0	63	30	0	25	44	1.54
58804--58862	19	3.4	19	71	22	65	45	18	22	13	1.84
58804--58883	33	2.4	33	91	0	124	46	21	21	11	1.82
58889--59017	19	7.6	19	67	25	92	14	22	19	43	1.87
58892--59017	33	3.9	32	85	10	184	15	22	19	43	1.87
58892--59016	65	1.9	66	93	4	218	15	22	19	43	1.88

Tables:   1

The End!