genome.fa.s6532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006532.1 Hibiscus syriacus cultivar Beakdansim tig00015922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76702

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7818--7903	45	1.9	45	85	4	120	37	16	30	16	1.91
8863--9552	55	12.6	55	90	1	1032	30	14	25	29	1.95
8863--9684	55	15.0	54	85	5	894	29	14	25	30	1.95
11663--11694	2	16.0	2	93	0	55	46	0	3	50	1.17
11914--12003	2	45.0	2	100	0	180	50	0	0	50	1.00
13949--14080	54	2.4	54	87	0	192	32	23	18	25	1.97
14142--14272	54	2.4	54	92	0	217	32	23	18	25	1.97
13813--14409	191	3.1	190	89	2	876	33	23	16	26	1.96
14569--14594	12	2.2	12	100	0	52	30	0	0	69	0.89
16879--16921	21	2.0	23	86	9	63	37	0	2	60	1.10
19807--19846	20	2.0	20	90	5	62	2	20	0	77	0.88
21590--21664	13	5.8	14	69	21	56	64	5	4	26	1.33
21586--21664	14	5.9	14	69	20	53	64	6	3	25	1.34
22455--23037	301	1.9	301	87	0	862	33	17	16	33	1.92
24933--24975	18	2.4	18	88	3	61	39	34	18	6	1.78
30777--30806	2	15.0	2	100	0	60	50	0	0	50	1.00
31653--31742	45	2.0	45	86	4	128	30	27	15	26	1.96
34095--34134	7	5.7	7	84	0	53	17	2	40	40	1.63
34095--34136	21	2.0	21	90	0	66	19	4	38	38	1.73
36324--36674	43	8.3	42	77	12	236	34	20	22	22	1.97
36353--36674	86	3.8	84	80	9	334	33	20	23	22	1.97
36356--36656	167	1.8	166	83	4	408	33	19	23	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39948--40246	41	7.3	41	81	1	312	32	18	20	29	1.96
42720--42897	90	2.0	90	94	0	311	37	11	6	44	1.66
44126--44160	17	2.1	17	100	0	70	40	28	0	31	1.57
48497--48618	40	3.0	40	97	0	226	24	16	26	32	1.96
48696--48821	47	2.8	45	84	5	173	38	7	23	30	1.81
49473--49547	35	2.1	35	90	0	114	33	28	28	10	1.90
49625--49706	24	3.5	24	86	3	121	35	20	18	25	1.95
52099--52163	31	2.1	30	83	11	78	18	23	41	16	1.90
52123--52163	18	2.3	18	95	0	73	12	21	48	17	1.79
52115--52146	13	2.5	13	94	0	55	15	25	43	15	1.86
53552--53587	19	1.9	19	88	5	56	33	5	11	50	1.61
54201--54228	2	14.0	2	100	0	56	50	0	0	50	1.00
57221--57349	20	6.6	20	77	10	124	32	27	13	25	1.94
58094--58127	12	2.8	12	90	0	50	52	26	2	17	1.58
60532--60567	18	2.0	18	94	0	63	55	25	2	16	1.55
60896--60936	20	2.0	20	95	0	73	43	24	17	14	1.86
61232--61284	24	2.2	24	86	0	70	35	1	13	49	1.53
61585--61671	39	2.2	39	91	0	147	45	19	14	19	1.85
61997--62036	14	2.9	14	100	0	80	45	20	0	35	1.51
63466--63561	21	4.6	21	79	8	97	21	17	36	23	1.95
63466--63561	42	2.3	42	80	7	113	21	17	36	23	1.95
65886--65942	22	2.6	22	88	0	87	19	19	42	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66064--66112	20	2.5	20	82	0	62	22	16	18	42	1.88
66064--66123	20	3.0	20	76	13	61	20	16	21	41	1.90
66172--66225	20	2.7	20	77	11	74	25	14	31	27	1.95
66524--66601	31	2.5	31	89	0	120	25	28	12	33	1.93
71679--71844	86	1.9	88	91	3	273	28	19	7	43	1.79
74301--74337	12	3.2	12	96	3	67	54	24	0	21	1.45
74327--74410	41	2.0	41	100	0	168	38	26	4	30	1.77
76585--76663	42	1.9	42	84	7	108	15	24	35	25	1.94
76606--76664	20	2.8	21	84	5	75	15	25	35	23	1.94

Tables:   1

The End!