Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006534.1 Hibiscus syriacus cultivar Beakdansim tig00015941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56220

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20694--20735
8
5.4
8
94
2
68
66
0
26
7
1.17
27379--27532
65
2.4
65
84
6
188
32
19
18
29
1.96
29684--29718
18
1.9
18
88
11
54
62
11
5
20
1.48
30211--30280
23
3.2
23
68
12
74
30
24
22
22
1.99
30234--30298
20
3.1
20
66
12
58
27
24
21
26
1.99
30155--30298
43
3.3
43
89
2
200
28
21
23
26
1.99
30681--30714
15
2.3
15
89
0
50
38
11
14
35
1.83
33671--33731
30
2.0
30
100
0
122
13
13
19
54
1.71
34120--34159
21
1.9
21
90
10
64
32
7
5
55
1.50
36140--36183
19
2.3
19
100
0
88
20
20
31
27
1.97
36094--36250
84
1.9
84
86
2
226
28
19
22
28
1.98
40815--40848
16
2.1
17
88
5
52
64
0
0
35
0.94
41348--41381
18
1.9
18
88
5
52
32
0
0
67
0.91
47905--47964
18
3.3
19
90
6
97
38
0
60
1
1.07
50391--50431
6
6.8
6
100
0
82
34
0
34
31
1.58
52905--52954
26
1.9
26
100
0
100
46
16
10
28
1.78
54396--54462
3
22.3
3
100
0
134
32
0
0
67
0.91
55587--55624
11
3.5
11
89
3
60
73
2
5
18
1.14
55587--55630
11
4.1
10
85
8
52
72
2
4
20
1.13
55587--55630
22
2.0
21
86
4
61
72
2
4
20
1.13
55770--56181
211
2.0
208
93
1
698
37
13
14
34
1.85

Tables:   1

The End!