genome.fa.s6535.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006535.1 Hibiscus syriacus cultivar Beakdansim tig00015950_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96922

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3982--4030	24	2.0	24	84	7	64	34	26	18	20	1.95
6857--6886	13	2.4	13	94	5	53	43	0	30	26	1.55
13976--14013	13	2.8	14	84	8	51	26	15	42	15	1.87
16892--16946	21	2.6	21	91	0	92	30	14	21	32	1.93
28386--28454	33	2.1	33	83	5	86	31	1	36	30	1.67
32770--32838	33	2.1	33	83	5	86	31	1	36	30	1.67
37332--37361	13	2.4	13	94	5	53	26	30	0	43	1.55
43247--43283	15	2.5	15	100	0	74	29	8	43	18	1.79
47404--47472	33	2.1	33	83	5	86	31	1	36	30	1.67
51342--51410	33	2.1	33	83	5	86	31	1	36	30	1.67
55249--55317	33	2.1	33	83	5	86	31	1	36	30	1.67
62454--62485	14	2.3	15	89	10	50	9	9	6	75	1.20
65085--65262	90	2.0	90	90	0	284	43	6	11	37	1.68
68069--68109	14	2.8	14	92	7	64	80	9	9	0	0.91
68063--68130	21	3.2	21	78	12	66	77	11	10	0	0.98
68061--68112	22	2.4	22	87	6	70	82	9	7	0	0.84
68062--68112	23	2.3	22	86	3	66	84	7	7	0	0.78
68086--68123	20	1.9	20	88	0	58	78	10	10	0	0.95
76060--76114	24	2.3	23	76	17	60	30	16	14	38	1.89
77339--77389	23	2.3	22	80	6	57	11	11	9	66	1.44
79102--79135	15	2.2	16	89	5	52	61	0	17	20	1.34
79661--79711	19	2.6	20	87	3	68	45	5	15	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80620--80665	23	2.0	23	88	12	69	67	4	13	15	1.38
86580--86606	13	2.1	13	100	0	54	0	7	14	77	0.97
86946--86991	23	2.0	23	88	12	69	67	4	13	15	1.38
90582--90633	19	2.6	21	90	6	81	46	5	13	34	1.67
91543--91602	30	2.0	31	83	3	77	55	10	8	26	1.61
95708--95767	30	2.0	31	83	3	77	55	10	8	26	1.61

Tables:   1

The End!