Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006536.1 Hibiscus syriacus cultivar Beakdansim tig00015951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109527
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:13833 original size:28 final size:28
Alignment explanation
Indices: 13796--13856 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
13786 ATAAATATGA
*
13796 TTTAA-ATTAATTTAAAAATGTTTTAAT
1 TTTAATATTAATTTAAAAATATTTTAAT
*
13823 TTTAATATTAATTTAACAATATTTTAAT
1 TTTAATATTAATTTAAAAATATTTTAAT
*
13851 ATTAAT
1 TTTAAT
13857 TTATGAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (28 bp):
TTTAATATTAATTTAAAAATATTTTAAT
Found at i:23536 original size:25 final size:25
Alignment explanation
Indices: 23501--23553 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
23491 TCCTTACCTA
*
23501 CTGCATGGTTTGACACCCAACTTTC
1 CTGCATAGTTTGACACCCAACTTTC
23526 CTGCATAGTTTGACACCCAACTTTC
1 CTGCATAGTTTGACACCCAACTTTC
23551 CTG
1 CTG
23554 TATGATCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (25 bp):
CTGCATAGTTTGACACCCAACTTTC
Found at i:26262 original size:21 final size:21
Alignment explanation
Indices: 26238--26291 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
26228 AGCAGACCCT
26238 AAGGCCGGCAAGTGGACTTAA
1 AAGGCCGGCAAGTGGACTTAA
*
26259 AAGGCCGGCGAGTGGACTTAA
1 AAGGCCGGCAAGTGGACTTAA
*
26280 ACGGCCGGCAAG
1 AAGGCCGGCAAG
26292 GGAACAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.22, G:0.37, T:0.11
Consensus pattern (21 bp):
AAGGCCGGCAAGTGGACTTAA
Found at i:35907 original size:26 final size:26
Alignment explanation
Indices: 35878--35932 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
35868 AGGTTACTTC
35878 GGTTATCATAGAGTTCAAGGTATTAT
1 GGTTATCATAGAGTTCAAGGTATTAT
* ** * *
35904 GGTTCTTTTAGAGTTCAGGGTATTTT
1 GGTTATCATAGAGTTCAAGGTATTAT
35930 GGT
1 GGT
35933 CATTTGAACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.07, G:0.27, T:0.44
Consensus pattern (26 bp):
GGTTATCATAGAGTTCAAGGTATTAT
Found at i:37006 original size:25 final size:24
Alignment explanation
Indices: 36929--37022 Score: 116
Period size: 24 Copynumber: 3.9 Consensus size: 24
36919 ACGTAGGTTC
* *
36929 GTCCTGAAGGACCTCGTAGAATTT
1 GTCCCGAAGGACCACGTAGAATTT
* * *
36953 GTCCCGGAGGACTATGTAGAATTT
1 GTCCCGAAGGACCACGTAGAATTT
*
36977 GTCCCGAAGGACCACATAGAAATTT
1 GTCCCGAAGGACCACGTAG-AATTT
*
37002 GTCCCGAATGACCACGTAGAA
1 GTCCCGAAGGACCACGTAGAA
37023 CCCTCGACTC
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
24 36 0.62
25 22 0.38
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23
Consensus pattern (24 bp):
GTCCCGAAGGACCACGTAGAATTT
Found at i:37021 original size:49 final size:48
Alignment explanation
Indices: 36929--37022 Score: 116
Period size: 49 Copynumber: 1.9 Consensus size: 48
36919 ACGTAGGTTC
* * * * * *
36929 GTCCTGAAGGACCTCGTAGAATTTGTCCCGGAGGACTATGTAGAATTT
1 GTCCCGAAGGACCACATAGAATTTGTCCCGAAGGACCACGTAGAATTT
*
36977 GTCCCGAAGGACCACATAGAAATTTGTCCCGAATGACCACGTAGAA
1 GTCCCGAAGGACCACATAG-AATTTGTCCCGAAGGACCACGTAGAA
37023 CCCTCGACTC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
48 16 0.42
49 22 0.58
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23
Consensus pattern (48 bp):
GTCCCGAAGGACCACATAGAATTTGTCCCGAAGGACCACGTAGAATTT
Found at i:37186 original size:15 final size:15
Alignment explanation
Indices: 37178--37249 Score: 67
Period size: 15 Copynumber: 4.9 Consensus size: 15
37168 TTCACTTAAC
37178 ACATTTTCACATAG-
1 ACATTTTCACATAGA
*
37192 ACATTTTCACGTAGA
1 ACATTTTCACATAGA
* * *
37207 ATATTTTCACCTATA
1 ACATTTTCACATAGA
* *
37222 ACATTTTCACGTTGA
1 ACATTTTCACATAGA
37237 ACATATTT-ACATA
1 ACAT-TTTCACATA
37250 TATCATATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
14 13 0.28
15 30 0.65
16 3 0.07
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (15 bp):
ACATTTTCACATAGA
Found at i:37902 original size:21 final size:22
Alignment explanation
Indices: 37871--37912 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
37861 TTATCAATAT
37871 CTTCACATTAGTATCGATACTA
1 CTTCACATTAGTATCGATACTA
37893 CTTCA-ATTAGTATCGATACT
1 CTTCACATTAGTATCGATACT
37913 GTTCATACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (22 bp):
CTTCACATTAGTATCGATACTA
Found at i:48413 original size:23 final size:23
Alignment explanation
Indices: 48382--48443 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
48372 ACAGGTAAAA
*
48382 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
48405 ATATAATGTAATATGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
**
48428 ATATAATAAAATAGGT
1 ATATAATGTAATAGGT
48444 TAATTACTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:48573 original size:23 final size:23
Alignment explanation
Indices: 48480--48567 Score: 140
Period size: 23 Copynumber: 3.8 Consensus size: 23
48470 AATAACATAT
* * *
48480 TAGGTACCACTTATATAATGCAA
1 TAGGTAGCGCTTATATAATGTAA
48503 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATGTAA
*
48526 TATGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATGTAA
48549 TAGGTAGCGCTTATATAAT
1 TAGGTAGCGCTTATATAAT
48568 AAAATATGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.35
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATGTAA
Found at i:48985 original size:23 final size:23
Alignment explanation
Indices: 48959--49008 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
48949 ACATATTTTA
*
48959 TTATATAAGCACTACCTATTACG
1 TTATATAAGCACTACCTAATACG
* *
48982 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCACTACCTAATACG
49005 TTAT
1 TTAT
49009 TGTGCTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (23 bp):
TTATATAAGCACTACCTAATACG
Found at i:49089 original size:87 final size:86
Alignment explanation
Indices: 48943--49200 Score: 408
Period size: 87 Copynumber: 3.0 Consensus size: 86
48933 ACAAATTAAA
* * * *
48943 TAATTAACATATTTTATTATATAAGCACTACCTATTACGTTATATAAGCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTATCTATTACATTATATAAGCG-TACCTAATATGTTA
*
49008 TTGTGCTTGATAATGTTTCTAG
65 TTGTGCTTGATAATGTTTCGAG
*
49030 TAATTAACCTATTTTATTATATAAGCGCTATCTATTACATTATATAAGTTGTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTATCTATTACATTATATAAG-CGTACCTAATATGTTA
*
49095 TTATGCTTGATAATGTTTCGAG
65 TTGTGCTTGATAATGTTTCGAG
*
49117 TAATTAACCTATTTTATTATATAAGCGCTATCTATTACATTATATAAGCGGTACCTAATATATTA
1 TAATTAACCTATTTTATTATATAAGCGCTATCTATTACATTATATAAGC-GTACCTAATATGTTA
*
49182 TTGTGCTTAATAATGTTTC
65 TTGTGCTTGATAATGTTTC
49201 CGGTTAAATG
Statistics
Matches: 158, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
87 157 0.99
88 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.44
Consensus pattern (86 bp):
TAATTAACCTATTTTATTATATAAGCGCTATCTATTACATTATATAAGCGTACCTAATATGTTAT
TGTGCTTGATAATGTTTCGAG
Found at i:49181 original size:23 final size:23
Alignment explanation
Indices: 49131--49182 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
49121 TAACCTATTT
* *
49131 TATTATATAAGCGCTATCTATTA
1 TATTATATAAGCGCTACCTAATA
* *
49154 CATTATATAAGCGGTACCTAATA
1 TATTATATAAGCGCTACCTAATA
49177 TATTAT
1 TATTAT
49183 TGTGCTTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (23 bp):
TATTATATAAGCGCTACCTAATA
Found at i:49438 original size:21 final size:21
Alignment explanation
Indices: 49416--49468 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
49406 GATTAAAATT
49416 AATTATATTTAATATATTCTTA
1 AATTATATTTAATATATT-TTA
*
49438 AATCA-ATATTAATATATTTTAA
1 AATTATAT-TTAATATATTTT-A
49460 AATTATATT
1 AATTATATT
49469 ATATTAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 4 0.15
22 20 0.77
23 2 0.08
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATATTTAATATATTTTA
Found at i:52428 original size:2 final size:2
Alignment explanation
Indices: 52421--52448 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
52411 ATTATTTAAA
52421 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52449 TTATTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:52492 original size:17 final size:17
Alignment explanation
Indices: 52470--52503 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
52460 TTTATGTGAC
52470 TAATATGAAAA-TAATAA
1 TAATAT-AAAAGTAATAA
52487 TAATATAAAAGTAATAA
1 TAATATAAAAGTAATAA
52504 CAAATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TAATATAAAAGTAATAA
Found at i:52528 original size:16 final size:16
Alignment explanation
Indices: 52509--52541 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
52499 AATAACAAAT
52509 TAATA-TTATAAATAAA
1 TAATATTTA-AAATAAA
52525 TAATATTTAAAATAAA
1 TAATATTTAAAATAAA
52541 T
1 T
52542 TTAAAAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATATTTAAAATAAA
Found at i:53916 original size:3 final size:3
Alignment explanation
Indices: 53910--53976 Score: 82
Period size: 3 Copynumber: 21.7 Consensus size: 3
53900 TATTATTACT
* *
53910 TAA TAA TAA TAA TATA TAAA TAA T-A TAAA TAA TAA TAA TAA TAT TTA
1 TAA TAA TAA TAA TA-A T-AA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
53957 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
53977 TAAGTAAAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 2 0.04
3 47 0.84
4 6 0.11
5 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:54259 original size:76 final size:76
Alignment explanation
Indices: 54133--54668 Score: 955
Period size: 76 Copynumber: 7.0 Consensus size: 76
54123 GGTCTTATGA
* *
54133 ATGACCCTGAGGGTTTGAAAACATCAAAAAGTTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
54198 AGGACTTACAG
66 AGGACTTACAG
* *
54209 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
54274 AGGACTTACAG
66 AGGACTTACAG
*
54285 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTTGGAAACATCATGCACCG
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTTGGAAACATCATGCACTG
*
54350 CAGGACTTACAG
65 TAGGACTTACAG
* * * *
54362 ATGACCATAAGGCTTTGAAAACATCAAAAAGCCCCCGAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
54427 AGGACTTACAG
66 AGGACTTACAG
*
54438 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
54503 AGGACTTACAG
66 AGGACTTACAG
54514 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
54579 AGGACTTACAG
66 AGGACTTACAG
*
54590 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCGTGCACTGT
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
54655 AGGACTTACAG
66 AGGACTTACAG
54666 ATG
1 ATG
54669 TGTGAAATAG
Statistics
Matches: 438, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
76 368 0.84
77 70 0.16
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (76 bp):
ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
AGGACTTACAG
Found at i:54547 original size:229 final size:228
Alignment explanation
Indices: 54146--54668 Score: 929
Period size: 229 Copynumber: 2.3 Consensus size: 228
54136 ACCCTGAGGG
* *
54146 TTTGAAAACATCAAAAAGTTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
*
54211 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
54276 GACTTACAGATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTTGGAAACAT
131 GACTTACAGATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTTGGAAACAT
54341 CATGCACCGCAGGACTTACAGATGACCATAAGGC
195 CATGCACCGCAGGACTTACAGATGACCATAAGGC
*
54375 TTTGAAAACATCAAAAAGCCCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
* *
54440 GACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
54505 GACTTACAGATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
* * * * *
54570 ATGCACTGTAGGACTTACAGATGACCCTGAGGG
196 ATGCACCGCAGGACTTACAGATGACCATAAGGC
*
54603 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCGTGCACTGTAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
54668 G
66 G
54669 TGTGAAATAG
Statistics
Matches: 281, Mismatches: 13, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
228 106 0.38
229 175 0.62
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (228 bp):
TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
GACTTACAGATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
ATGCACCGCAGGACTTACAGATGACCATAAGGC
Found at i:54946 original size:166 final size:166
Alignment explanation
Indices: 54672--54996 Score: 537
Period size: 166 Copynumber: 2.0 Consensus size: 166
54662 ACAGATGTGT
* *
54672 GAAATAGTTTACTAAGTAAAAAAACTAAGGAAATCATTTTCTTACTTTTCAACAATTTCATTTTT
1 GAAATAGTTTACTAAGTAAAAAAACTAAGAAAATCATTTTATTACTTTTCAACAATTTCATTTTT
* * *
54737 AGAAAAGATTAAATGAGAAACTTTGGAAATCGTTTTCTCATTATG-TTTCAAGATAACCTGTTGA
66 AGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATGTTTTCAA-ATAACATGTTGA
54801 TTGGGTAACATGCCCCAATCTCAAGATAAGGTTGTTG
130 TTGGGTAACATGCCCCAATCTCAAGATAAGGTTGTTG
*
54838 GAAATAGTTTACTAAGTAAAAAAACTAAGAAAATCGTTTTATTACTTTTCAACAATTTCA-TTTT
1 GAAATAGTTTACTAAGTAAAAAAACTAAGAAAATCATTTTATTACTTTTCAACAATTTCATTTTT
* *
54902 AGAAAAGATAAAAATGAGAAACTATGGAAATCGTTTTTTCATTATGTTTTTGAAATAACATGTTG
66 AGAAAAGAT-AAAATGAGAAACTATGGAAATCGTTTTCTCATTATG-TTTTCAAATAACATGTTG
54967 ATTGGGTAACATGCCCCAATCTCAAGATAA
129 ATTGGGTAACATGCCCCAATCTCAAGATAA
54997 TGCTCATTCT
Statistics
Matches: 148, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
165 13 0.09
166 90 0.61
167 40 0.27
168 5 0.03
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (166 bp):
GAAATAGTTTACTAAGTAAAAAAACTAAGAAAATCATTTTATTACTTTTCAACAATTTCATTTTT
AGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATGTTTTCAAATAACATGTTGAT
TGGGTAACATGCCCCAATCTCAAGATAAGGTTGTTG
Found at i:55538 original size:22 final size:22
Alignment explanation
Indices: 55513--55586 Score: 112
Period size: 22 Copynumber: 3.4 Consensus size: 22
55503 GATAAAGCTT
* *
55513 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTAAAAAGAGAATCTA
55535 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
*
55557 TCATCTTTAAAAAGAGAATTTA
1 TCATCTTTAAAAAGAGAATCTA
*
55579 TAATCTTT
1 TCATCTTT
55587 GAAGAGTGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:58054 original size:114 final size:114
Alignment explanation
Indices: 57849--58182 Score: 535
Period size: 114 Copynumber: 2.9 Consensus size: 114
57839 GATCATGCAG
* *
57849 TTCATCTTT-AAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAA-TCCAATGATTGGTTCTGGGGTTCCTACCAAATCAGATCAGATAACTCAAAG
* *
57913 AACACTTACAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
65 AACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATAAGCAAA
** *
57963 TTCATCTTTCAAATCCAATGATTGGTTCTATGGTTCCTACCAAATCAGATCAAATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCCTACCAAATCAGATCAGATAACTCAAAGA
* *
58028 ACACTTCCAGAAGATGCTATTAGGTCTCCTTATTTATACTATAAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATAAGCAAA
* * *
58077 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGCTCATACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCCTACCAAATCAGATCAGATAACTCAAAGA
*
58142 ACACTTCCAGAAGATGTTATTGGGTCTCCTTATTTCTACTA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
58183 CGAGAACGTG
Statistics
Matches: 201, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
114 198 0.99
115 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCCTACCAAATCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATAAGCAAA
Found at i:60333 original size:8 final size:8
Alignment explanation
Indices: 60320--60370 Score: 57
Period size: 8 Copynumber: 6.0 Consensus size: 8
60310 CCTTCTTCTT
60320 TTTTTTTC
1 TTTTTTTC
*
60328 TTTTTTCC
1 TTTTTTTC
60336 TTTTTTATC
1 TTTTTT-TC
*
60345 TTTTTTTT
1 TTTTTTTC
60353 TTCTCTTTTC
1 TT-T-TTTTC
60363 TTTTTTTC
1 TTTTTTTC
60371 CTTCTTTGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 21 0.58
9 9 0.25
10 6 0.17
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:60377 original size:30 final size:29
Alignment explanation
Indices: 60312--60377 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
60302 CAATTTCTCC
*
60312 TTCTTC-TTTTTTTTTCTTTTTTCCTTTT
1 TTCTTCTTTTTTTTTTCTCTTTTCCTTTT
* *
60340 TT-ATCTTTTTTTTTTCTCTTTTCTTTTT
1 TTCTTCTTTTTTTTTTCTCTTTTCCTTTT
60368 TTCCTTCTTT
1 TT-CTTCTTT
60378 GCTGGATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 2 0.06
28 24 0.77
30 5 0.16
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (29 bp):
TTCTTCTTTTTTTTTTCTCTTTTCCTTTT
Found at i:60388 original size:27 final size:26
Alignment explanation
Indices: 60358--60410 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
60348 TTTTTTTCTC
60358 TTTTCTTTTTTTCCTTCTTTGCTGGAT
1 TTTTC-TTTTTTCCTTCTTTGCTGGAT
*
60385 TTTTCTTTTTTCTTTCTTTGCTGGAT
1 TTTTCTTTTTTCCTTCTTTGCTGGAT
60411 GAGTATAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.04, C:0.17, G:0.11, T:0.68
Consensus pattern (26 bp):
TTTTCTTTTTTCCTTCTTTGCTGGAT
Found at i:63309 original size:14 final size:14
Alignment explanation
Indices: 63292--63330 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
63282 TAAAAGTATG
63292 AATGCAAAATGAAA
1 AATGCAAAATGAAA
*
63306 AATGCAAAGATGCAA
1 AATGCAAA-ATGAAA
63321 AATG-AAAATG
1 AATGCAAAATG
63331 CATGTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 3 0.13
14 11 0.48
15 9 0.39
ACGTcount: A:0.59, C:0.08, G:0.18, T:0.15
Consensus pattern (14 bp):
AATGCAAAATGAAA
Found at i:65621 original size:15 final size:16
Alignment explanation
Indices: 65597--65627 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
65587 ACAGACAAAT
65597 AAAATAATTAATAAAA
1 AAAATAATTAATAAAA
65613 AAAAT-ATTAATAAAA
1 AAAATAATTAATAAAA
65628 TAATATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATAATTAATAAAA
Found at i:66522 original size:2 final size:2
Alignment explanation
Indices: 66515--66561 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
66505 ATTATTTAAA
66515 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66557 A- AT AT
1 AT AT AT
66562 TTATTTATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66609 original size:17 final size:17
Alignment explanation
Indices: 66587--66620 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
66577 TTTATGTGAC
66587 TAATATGAAAA-TAATAA
1 TAATAT-AAAAGTAATAA
66604 TAATATAAAAGTAATAA
1 TAATATAAAAGTAATAA
66621 AAAATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TAATATAAAAGTAATAA
Found at i:66645 original size:16 final size:16
Alignment explanation
Indices: 66617--66658 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
66607 TATAAAAGTA
66617 ATAAA-AAATTAATATT
1 ATAAATAAA-TAATATT
66633 ATAAATAAATAATATT
1 ATAAATAAATAATATT
66649 -TAAAATAAAT
1 AT-AAATAAAT
66659 TTAAAAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 1 0.04
16 20 0.83
17 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAAATAAATAATATT
Found at i:68038 original size:3 final size:3
Alignment explanation
Indices: 68032--68104 Score: 94
Period size: 3 Copynumber: 23.7 Consensus size: 3
68022 TATTATTACT
* *
68032 TAA TAA TAA TAA TATA TAAA TAA T-A TAAA TAA TAA TAA TAA TAT TTA
1 TAA TAA TAA TAA TA-A T-AA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
68079 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
68105 TAAATAAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.03
3 53 0.85
4 6 0.10
5 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:68521 original size:42 final size:41
Alignment explanation
Indices: 68473--68583 Score: 195
Period size: 42 Copynumber: 2.7 Consensus size: 41
68463 TTCCGAATTC
68473 CCGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTT
1 CCGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTT
68514 CTCGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTT
1 C-CGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTT
*
68556 CCAGTGTTTGTTTCACGTAATTGGTTTT
1 CC-GTGTTTGTTTCACGTAATTCGTTTT
68584 CCTGAACGTA
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
41 2 0.03
42 65 0.97
ACGTcount: A:0.16, C:0.14, G:0.20, T:0.50
Consensus pattern (41 bp):
CCGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTT
Found at i:68898 original size:54 final size:52
Alignment explanation
Indices: 68787--68898 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 52
68777 TTTATTAATA
* *
68787 TTTATAATAATATAATATTATGTTTTTAATATTATATAAAATAATCAATTAT
1 TTTATAATAATATAATATTATATTTTTAATATTATATAAAATAATAAATTAT
* * * *
68839 ATTATAATAATATAAGATATTATATTTTT-ATTTTA-ATAATGTATAATAAATTTT
1 TTTATAATAATAT-A-ATATTATATTTTTAATATTATATAA--AATAATAAATTAT
68893 TTTATA
1 TTTATA
68899 TATTTAATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
52 16 0.33
53 6 0.12
54 27 0.55
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.52
Consensus pattern (52 bp):
TTTATAATAATATAATATTATATTTTTAATATTATATAAAATAATAAATTAT
Found at i:68906 original size:28 final size:28
Alignment explanation
Indices: 68861--68938 Score: 86
Period size: 31 Copynumber: 2.7 Consensus size: 28
68851 TAAGATATTA
* *
68861 TATTTTTAT-TTTAATAATGTATAATAAATT
1 TATTTATATATTTAATAATGAATAAT--A-T
*
68891 TTTTTATATATTTAATAATGAATAATAT
1 TATTTATATATTTAATAATGAATAATAT
68919 TATTTATATATTTAAATAAT
1 TATTTATATATTT-AATAAT
68939 ATTTTAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 13 0.31
29 7 0.17
30 7 0.17
31 15 0.36
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (28 bp):
TATTTATATATTTAATAATGAATAATAT
Found at i:68969 original size:23 final size:23
Alignment explanation
Indices: 68943--68987 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
68933 AATAATATTT
68943 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
68966 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
68988 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:69106 original size:19 final size:19
Alignment explanation
Indices: 69084--69146 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 19
69074 ATAAAAATAC
69084 TATTTAATAATAAATAAAT
1 TATTTAATAATAAATAAAT
*
69103 TATTTTTAATAATAAA-AAAG
1 TA--TTTAATAATAAATAAAT
*
69123 T-TTT-ATGATAAATAATAT
1 TATTTAATAATAAATAA-AT
69141 TATTTA
1 TATTTA
69147 TTGTATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
16 7 0.20
17 5 0.14
18 2 0.06
19 5 0.14
20 4 0.11
21 12 0.34
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTTAATAATAAATAAAT
Found at i:69303 original size:14 final size:14
Alignment explanation
Indices: 69270--69297 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69260 AAATGTAATT
69270 CATTTTACGGAAAA
1 CATTTTACGGAAAA
69284 CATTTTACGGAAAA
1 CATTTTACGGAAAA
69298 TGTTTTCCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
CATTTTACGGAAAA
Found at i:69337 original size:20 final size:20
Alignment explanation
Indices: 69300--69338 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69290 ACGGAAAATG
**
69300 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATCAAATTCA
*
69320 TTTTCCAGAATTCAAATTC
1 TTTTCCAGAAATCAAATTC
69339 CAGTAATTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (20 bp):
TTTTCCAGAAATCAAATTCA
Found at i:69354 original size:15 final size:15
Alignment explanation
Indices: 69312--69354 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
69302 TTCCAGAAAT
69312 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
69327 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
69341 GTAATTCATTTTCC
1 GTAATTCATTTTCC
69355 GAAAAACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:70356 original size:45 final size:40
Alignment explanation
Indices: 70306--70387 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 40
70296 AAAGTCTTAT
*
70306 ATTTTAGTTTTTAAAAACAACATATAAATATTAATATCATTAATA
1 ATTTTA-TTTTGAAAAA-AA-ATA-AAATATTAATAT-ATTAATA
*
70351 ATTTTATTTTGAAAAAAAATAAAATTTTAATATATTA
1 ATTTTATTTTGAAAAAAAATAAAATATTAATATATTA
70388 TTTTTTCGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 4 0.11
41 11 0.31
42 3 0.09
43 2 0.06
44 9 0.26
45 6 0.17
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (40 bp):
ATTTTATTTTGAAAAAAAATAAAATATTAATATATTAATA
Found at i:70955 original size:23 final size:23
Alignment explanation
Indices: 70929--70988 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
70919 ATCAAACACA
* * *
70929 ATAACATATTAGGTAGTGTTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
70952 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
* *
70975 ATAATAAAATAGGT
1 ATAACATAATAGGT
70989 TAATTACTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.37
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:70975 original size:87 final size:87
Alignment explanation
Indices: 70878--71063 Score: 320
Period size: 87 Copynumber: 2.1 Consensus size: 87
70868 ACAAATTAGT
70878 TAGCGCTTATATAATAAAATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGT
1 TAGCGCTTATATAATAAAATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGT
*
70943 AGT-GTTTATATAATGTAATAGG
66 A-TCGCTTATATAATGTAATAGG
* **
70965 TAGCGCTTATATAATAAAATAGGTTAATTACTGGAAATATTATCAAGTACAATAACATATTAGGT
1 TAGCGCTTATATAATAAAATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGT
71030 ATCGCTTATATAATGTAATAGG
66 ATCGCTTATATAATGTAATAGG
71052 TAGCGCTTATAT
1 TAGCGCTTATAT
71064 TGACCTATTT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
86 1 0.01
87 93 0.99
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (87 bp):
TAGCGCTTATATAATAAAATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGT
ATCGCTTATATAATGTAATAGG
Found at i:71548 original size:198 final size:196
Alignment explanation
Indices: 71065--71780 Score: 933
Period size: 197 Copynumber: 3.6 Consensus size: 196
71055 CGCTTATATT
* * * *
71065 GACCTATTTTATCATAAAATCGGTATATTTATATCAGTAACATTGCAAATTTACCTATTACATTA
1 GACCTATTTTCTCATAAAACCGGTATATTTATACCAGT-ACATTGTAAATTTACCTATTACATTA
* * * *
71130 TAATTA-CGGTTTCGATGTTTTTGGAATCGATACAATTT--TAAATGTATTGACACTTTATGCGT
65 TAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGTGT
*
71192 GCACCTCGTTGGGCATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAACGTGTCGATACATT
129 GCACCTCGTT-GGCATTCATTCTGG-AAAAAGTATCGACACAAACTTAAAATGTGTCGATACATT
71257 ATGTA
192 ATGTA
* *
71262 GACCTATTTTCTCATAAAACCGGTATATTTCTACCAGGTACATTGTAAATTTACCTATTACATTG
1 GACCTATTTTCTCATAAAACCGGTATATTTATACCA-GTACATTGTAAATTTACCTATTACATTA
*
71327 TAATTATCGGTTTGGAT-TTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTG
65 TAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTG
71391 CACCTCGTTGGACATTCATTCTGGAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTAT
130 CACCTCGTTGG-CATTCATTCTGGAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTAT
71456 GTA
194 GTA
** * * *
71459 GACCTATTTTCTCATAAAACCAATATATTTCTACCGAGTACATTGTAAATTTATCTATTACATTG
1 GACCTATTTTCTCATAAAACCGGTATATTTATACC-AGTACATTGTAAATTTACCTATTACATTA
*
71524 TAATTATCGGTTTCGATGTTTTTGGGATCTATACTTTTAATAAATGTATCGACACTTTATGTGTG
65 TAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTG
* * * *** *
71589 CACCTTGTTTGGCATTCATTCTGGACAAAATGTATTGATAC-TTTTTAAATTTGTGTCGATACAT
130 CACCTCG-TTGGCATTCATTCTGGA-AAAA-GTATCGACACAAACTTAAA-ATGTGTCGATACAT
71653 TATGTA
191 TATGTA
* * * * **
71659 GACATATTCTCTTATAAAACCGTTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTA
1 GACCTATTTTCTCATAAAACCGGTATATTTATACCAG-TACATTGTAAATTTACCTATTACATTA
* * *
71724 TAATTATCGGTTTTGATGTAATATATGTG-TCGATACTTTTAGA-AAATGTATCGACAC
65 TAATTATCGGTTTCGATGT--T-TTTGGGATCGATACTTTTA-ATAAATGTATCGACAC
71781 ATATGTTTAA
Statistics
Matches: 465, Mismatches: 38, Indels: 27
0.88 0.07 0.05
Matches are distributed among these distances:
196 3 0.01
197 198 0.43
198 121 0.26
199 14 0.03
200 98 0.21
202 26 0.06
203 5 0.01
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (196 bp):
GACCTATTTTCTCATAAAACCGGTATATTTATACCAGTACATTGTAAATTTACCTATTACATTAT
AATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGC
ACCTCGTTGGCATTCATTCTGGAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGT
A
Found at i:71878 original size:14 final size:16
Alignment explanation
Indices: 71842--71886 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
71832 ATTATAATAA
71842 ATAATAAATATAATTT
1 ATAATAAATATAATTT
*
71858 ATAATAAAT-TTATTT
1 ATAATAAATATAATTT
71873 -TAATAAAATATAAT
1 ATAAT-AAATATAAT
71887 AATCATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 4 0.16
15 9 0.36
16 12 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATAAATATAATTT
Found at i:72016 original size:24 final size:25
Alignment explanation
Indices: 71948--72016 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
71938 TAAATAATAT
* *
71948 TAAATAA-ATTATTCTTATATTTTAA
1 TAAATAATATTATTATTAT-TGTTAA
71973 -AAATAATATTATTATT-TTGTTAA
1 TAAATAATATTATTATTATTGTTAA
71996 TAAATAATATTATT-TTATTGT
1 TAAATAATATTATTATTATTGT
72017 ATTTAATGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 7 0.18
24 24 0.62
25 8 0.21
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (25 bp):
TAAATAATATTATTATTATTGTTAA
Found at i:72666 original size:27 final size:27
Alignment explanation
Indices: 72628--72691 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
72618 ATATTTTATA
72628 ATAA-TTTTATTTAATAAAA-TATA-AT
1 ATAATTTTTATTT-ATAAAATTATAGAT
72653 CATAATTTTTATTTATAAAATTATAGAT
1 -ATAATTTTTATTTATAAAATTATAGAT
72681 ATAATATTTTA
1 ATAAT-TTTTA
72692 ATAATAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
26 10 0.29
27 17 0.50
28 7 0.21
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
ATAATTTTTATTTATAAAATTATAGAT
Found at i:72723 original size:14 final size:15
Alignment explanation
Indices: 72681--72725 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
72671 AATTATAGAT
*
72681 ATAATATTTTAAT-A
1 ATAATATTTAAATAA
*
72695 ATAATATTTACATAA
1 ATAATATTTAAATAA
72710 ATAATA-TTAAATAA
1 ATAATATTTAAATAA
72724 AT
1 AT
72726 TATTCTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 20 0.74
15 7 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATTTAAATAA
Found at i:72786 original size:24 final size:25
Alignment explanation
Indices: 72734--72786 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
72724 ATTATTCTAA
72734 TATT-TTAAAAAATAATATTATTAT
1 TATTGTTAAAAAATAATATTATTAT
* *
72758 T-TTGTTAATAAATAATATTGTT-T
1 TATTGTTAAAAAATAATATTATTAT
72781 TATTGT
1 TATTGT
72787 ATTTGATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.55
Consensus pattern (25 bp):
TATTGTTAAAAAATAATATTATTAT
Found at i:73067 original size:23 final size:23
Alignment explanation
Indices: 73041--73090 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
73031 ACCTATTTTA
*
73041 TTATATAAGCGCTACCTATTACG
1 TTATATAAGCGCTACCTAATACG
* *
73064 TTATATAATCGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
73087 TTAT
1 TTAT
73091 TGTGCTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:73145 original size:23 final size:23
Alignment explanation
Indices: 73118--73168 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
73108 ATAGTAATTA
**
73118 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
73141 ACCTATTACATTATATAAGCGGT
1 ACCTATTACATTATATAAGCGCT
73164 ACCTA
1 ACCTA
73169 ATATTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:73171 original size:87 final size:87
Alignment explanation
Indices: 73025--73253 Score: 343
Period size: 87 Copynumber: 2.6 Consensus size: 87
73015 ACAAATTAAA
* *
73025 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACGTTATATAATCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
*
73090 TTGTGCTTGATAATGTTTAT-AG
66 TTGTGCTTGACAATGTTT-TCAG
* *
73112 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATTTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
73177 TTGTGCTTGACAATGTTTTCAG
66 TTGTGCTTGACAATGTTTTCAG
* * * * *
73199 TAATTAACCTATTTTTTTTATATAAGTGCTACTTACTACATTATATAAGCACTAC
1 TAATTAACCTA-TTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTAC
73254 TTATTACATT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
86 1 0.01
87 91 0.71
88 37 0.29
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
TTGTGCTTGACAATGTTTTCAG
Found at i:73246 original size:23 final size:23
Alignment explanation
Indices: 73216--73316 Score: 132
Period size: 23 Copynumber: 4.4 Consensus size: 23
73206 CCTATTTTTT
* *
73216 TTATATAAGTGCTACTTACTACA
1 TTATATAAGCGCTACTTATTACA
*
73239 TTATATAAGCACTACTTATTACA
1 TTATATAAGCGCTACTTATTACA
* *
73262 TTATATAAACGCTACCTATTACA
1 TTATATAAGCGCTACTTATTACA
*
73285 TTATAT-AGACGCTACATATTACA
1 TTATATAAG-CGCTACTTATTACA
73308 TTATATAAG
1 TTATATAAG
73317 TGGTACCTAA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
22 1 0.01
23 65 0.96
24 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.38
Consensus pattern (23 bp):
TTATATAAGCGCTACTTATTACA
Found at i:73408 original size:64 final size:64
Alignment explanation
Indices: 73307--73462 Score: 258
Period size: 64 Copynumber: 2.4 Consensus size: 64
73297 TACATATTAC
* * * ** *
73307 ATTATATAAGTGGTACCTAATATGTTATTGTGCTTAATAATGTTTCTAGTAATTAACCTATTTT
1 ATTATATAAGCGCTACCTATTACATTATTGTGCTTAATAATGTTTCCAGTAATTAACCTATTTT
73371 ATTATATAAGCGCTACCTATTACATTATTGTGCTTAATAATGTTTCCAGTAATTAACCTATTTT
1 ATTATATAAGCGCTACCTATTACATTATTGTGCTTAATAATGTTTCCAGTAATTAACCTATTTT
73435 ATTATATAAGCGCTACCTATTACATTAT
1 ATTATATAAGCGCTACCTATTACATTAT
73463 ATAAGCGCTA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 86 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.44
Consensus pattern (64 bp):
ATTATATAAGCGCTACCTATTACATTATTGTGCTTAATAATGTTTCCAGTAATTAACCTATTTT
Found at i:73461 original size:23 final size:23
Alignment explanation
Indices: 73426--73510 Score: 134
Period size: 23 Copynumber: 3.7 Consensus size: 23
73416 CCAGTAATTA
**
73426 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
73449 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
73472 ACCTATTACATTATATAAACGCT
1 ACCTATTACATTATATAAGCGCT
*
73495 ACCTATTACATCATAT
1 ACCTATTACATTATAT
73511 TTTTACTTGT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:79531 original size:20 final size:17
Alignment explanation
Indices: 79506--79544 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 17
79496 TTATAGTTAA
79506 AAATTAAATCAATAATATTT
1 AAATT-AAT-AATAAT-TTT
79526 AAATTAATAATAATTTT
1 AAATTAATAATAATTTT
79543 AA
1 AA
79545 TAATGAGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 6 0.32
19 3 0.16
20 5 0.26
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATTAATAATAATTTT
Found at i:86615 original size:13 final size:13
Alignment explanation
Indices: 86592--86630 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
86582 AAAATTACAT
*
86592 ATTGATTTTCAAAC
1 ATTG-TTTTCAAAA
86606 ATTGTTTTCAAAA
1 ATTGTTTTCAAAA
*
86619 ATAGTTTTCAAA
1 ATTGTTTTCAAA
86631 TTTGCATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 19 0.83
14 4 0.17
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTGTTTTCAAAA
Found at i:88039 original size:14 final size:15
Alignment explanation
Indices: 88020--88049 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
88010 TAAAACATTT
88020 TTGATAT-TTTTGGA
1 TTGATATGTTTTGGA
88034 TTGATATGTTTTGGA
1 TTGATATGTTTTGGA
88049 T
1 T
88050 GTAATGGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
TTGATATGTTTTGGA
Found at i:88390 original size:13 final size:13
Alignment explanation
Indices: 88368--88401 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
88358 AGGGGGAATA
*
88368 ATTTTCAAAATTG
1 ATTTTCAAAAATG
88381 A-TTTCAAAAATG
1 ATTTTCAAAAATG
88393 ATTTTCAAA
1 ATTTTCAAA
88402 TCTTAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (13 bp):
ATTTTCAAAAATG
Found at i:89284 original size:19 final size:19
Alignment explanation
Indices: 89260--89304 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
89250 GAATTTGTAA
89260 TTTTCTCTTTGGGAGAGAG
1 TTTTCTCTTTGGGAGAGAG
89279 TTTTCTCTTTGGGAGAGAG
1 TTTTCTCTTTGGGAGAGAG
*
89298 TGTTCTC
1 TTTTCTC
89305 AAGAATTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.13, C:0.13, G:0.29, T:0.44
Consensus pattern (19 bp):
TTTTCTCTTTGGGAGAGAG
Found at i:89983 original size:17 final size:17
Alignment explanation
Indices: 89956--89999 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
89946 TTATGGGGTG
89956 AAAAATGATA-TTATTGTA
1 AAAAAT-ATATTTATT-TA
89974 AAAAATATATTTATTTA
1 AAAAATATATTTATTTA
89991 AAATAATAT
1 AAA-AATAT
90000 CTGACTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
AAAAATATATTTATTTA
Found at i:92792 original size:7 final size:7
Alignment explanation
Indices: 92780--92814 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
92770 TCTGGAATTG
92780 TCATCTC
1 TCATCTC
92787 TCATCTC
1 TCATCTC
92794 TCATCTC
1 TCATCTC
92801 TCATCTC
1 TCATCTC
92808 TCATCTC
1 TCATCTC
92815 CATGTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
TCATCTC
Found at i:95715 original size:23 final size:23
Alignment explanation
Indices: 95668--95717 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
95658 AATAACATAT
**
95668 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
95691 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
95714 TAGG
1 TAGG
95718 CATTTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:95779 original size:87 final size:87
Alignment explanation
Indices: 95631--95880 Score: 428
Period size: 87 Copynumber: 2.9 Consensus size: 87
95621 TATGTTATAT
*
95631 CATTTAACCGGAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
95696 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * * *
95718 CATTTAACCGGAAATATTATCAAGTACAATTACATATTAGGTAACGCTTATATAATATAATAGGC
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
95783 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * *
95805 TATTTAACCGTAAATATTATCAAGTACAATAACATATTAGGTAGCGTTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
95870 AGCGCTTATAT
66 AGCGCTTATAT
95881 TGACATATTT
Statistics
Matches: 151, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 151 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:95781 original size:23 final size:23
Alignment explanation
Indices: 95755--95806 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
95745 AATTACATAT
*
95755 TAGGTAACGCTTATATAATATAA
1 TAGGTAACGCTTATATAATAAAA
* *
95778 TAGGCAGCGCTTATATAATAAAA
1 TAGGTAACGCTTATATAATAAAA
95801 TAGGTA
1 TAGGTA
95807 TTTAACCGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (23 bp):
TAGGTAACGCTTATATAATAAAA
Found at i:99306 original size:200 final size:200
Alignment explanation
Indices: 98914--100028 Score: 1850
Period size: 200 Copynumber: 5.6 Consensus size: 200
98904 ACAAGATGTA
* * *
98914 TCGATACTTTTTGTACACTTGTTTTCTCAAAAACTGGTATATTTAGGCCGATTACATTAATAATT
1 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
*
98979 TACCTATTACATTATAATTATGTTTTT-GATGTTTT-GGGATCGACAGTTGTTTTAAATGTATCG
66 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCG
* * *
99042 ACACTTTGTTGTGCACTTGGTTTTTTAAAATACAATTTGGACAAGATATATCGCCACTTTTTTTT
131 ACACTTTGTTGTGCACTTGG-TTTTTAAAATACAATCTGGACAAGATGTATCGACAC-TTTTTTT
*
99107 ATTTCTG
194 ATTTGTG
* *
99114 TCCATACTTTTTGTACACATGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
1 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
* *
99179 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGTGATCGACACTTGTTTTAAATGTATTG
66 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCG
*
99244 ATACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
131 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
99309 TTGTG
196 TTGTG
*
99314 TCGATAC-TTTTGTACACCTGTTTTCTCAAAAACTAGTATATTTAGACCGGTTACATTAATAATT
1 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
* *
99378 TACCTA-TATATTATAATTATGTTTTTCGATG-TTTCGAGATCGACACTTGTTTTAAATGTATCG
66 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCG
*
99441 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATTGACACTTTTTTTA-
131 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
99505 TTGTG
196 TTGTG
* * * *
99510 TCGATAC-TTTTGTACACCCGTTTTCTCAAAAACCGGTATATTTAGACCAGTTACATTAATCATT
1 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
* *
99574 TACCTATTACATTATAATTATGTTTTTCGATATTTTCGGGATCAACACTTGTTTTAAATGTATCG
66 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCG
99639 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
131 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
99704 TTGTG
196 TTGTG
* * *
99709 TCGATACTTTTTGTACACCTATTTTCTCAAAAACCGATATATTTAGACCGGTTACATTAATAATT
1 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
* *
99774 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGTTCGACACTTATTTTAAATGTATCG
66 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCG
* *
99839 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATTTATCGACATTTTTTTTAT
131 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
99904 TTGTG
196 TTGTG
* *
99909 TCGATACTTTTTCTACACCTGTTTTCTCAAAAA-TCGGTATATTTAGACCAGTTACATTAATAAT
1 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACT-GGTATATTTAGACCGGTTACATTAATAAT
*
99973 TTACCTATTACATTATAATTATGTTTTTTGATGTTTTCGGGATCGACACTTGTTTT
65 TTACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTT
100029 GGTTTTTAAA
Statistics
Matches: 859, Mismatches: 49, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
196 70 0.08
197 115 0.13
198 117 0.14
199 73 0.08
200 399 0.46
201 41 0.05
202 44 0.05
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (200 bp):
TCGATACTTTTTGTACACCTGTTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATT
TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCG
ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
TTGTG
Found at i:100143 original size:174 final size:172
Alignment explanation
Indices: 99855--100202 Score: 615
Period size: 174 Copynumber: 2.0 Consensus size: 172
99845 TGTTGTGCAC
*
99855 TTGGTTTTTAAAATACAATCTGGACAAGATTTATCGACATTTTTTTTATTTGTGTCGATACTTTT
1 TTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACATTTTTTTTATTTGTGTCGATACTTTT
99920 TCTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCAGTTACATTAATAATTTACCTATTACA
66 TCTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCAGTTACATTAATAATTTACCTATTACA
* *
99985 TTATAATTATGTTTTTTGATGTTTTCGGGATCGACACTTGTT
131 TTATAATTATATTTTTTGATGTTTTCGGAATCGACACTTGTT
*
100027 TTGGTTTTTAAAATATAATCTGGACAAGATGTATCGACACTTTTTTTTTATTTGTGTCGATACTT
1 TTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACA--TTTTTTTTATTTGTGTCGATACTT
* * *
100092 TTTGTACACTTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTACATTAATAATTTACCTATTA
64 TTTCTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCAGTTACATTAATAATTTACCTATTA
100157 CATTATAATTATATTTTTTGATGTTTTCGGAATCGACACTTGTT
129 CATTATAATTATATTTTTTGATGTTTTCGGAATCGACACTTGTT
100201 TT
1 TT
100203 AAATGTATCG
Statistics
Matches: 167, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
172 37 0.22
174 130 0.78
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (172 bp):
TTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACATTTTTTTTATTTGTGTCGATACTTTT
TCTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCAGTTACATTAATAATTTACCTATTACA
TTATAATTATATTTTTTGATGTTTTCGGAATCGACACTTGTT
Found at i:100384 original size:202 final size:201
Alignment explanation
Indices: 100027--100526 Score: 830
Period size: 202 Copynumber: 2.5 Consensus size: 201
100017 GACACTTGTT
*
100027 TTGGTTTTTAAAATATAATCTGGACAAGATGTATCGACACTTTTTTTTTATTTGTGTCGATACTT
1 TTGGTTTTTAAAATACAATCTGGACAAGATGTATCG-CACTTTTTTTTTATTTGTGTCGATACTT
*
100092 TTTGTACACTTGTTTTCTCAAAAA-TCGGTATATTTAGACCGGTTACATTAATAATTTACCTATT
65 TTTGTACACTTATTTTCTCAAAAACT-GGTATATTTAGACCGGTTACATTAATAATTTACCTATT
*
100156 ACATTATAATTATATTTTTTGATGTTTTCGGAATCGACACTTGTTTTAAATGTATCGACACTTTG
129 ACATTATAATTATATTTTTCGATGTTTTCGGAATCGACACTTGTTTTAAATGTATCGACACTTTG
100221 TTGTGCAC
194 TTGTGCAC
100229 TTGGTTTTTAAAATACAATCTGGACAAGATGTATCGCCACTTTTTTTTTATTTGTGTCGATACTT
1 TTGGTTTTTAAAATACAATCTGGACAAGATGTATCG-CACTTTTTTTTTATTTGTGTCGATACTT
*
100294 TTTGTACACTTATTTTCTCAAAAACTAGTATATTTAGACCGGTTACATTAATAATTTACCTATTA
65 TTTGTACACTTATTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATTTACCTATTA
* * *
100359 CATTATAATTATGTTTTTCGATGTTTTCGGGATCGGCACTTGTTTTAAATGTATCGACACTTTGT
130 CATTATAATTATATTTTTCGATGTTTTCGGAATCGACACTTGTTTTAAATGTATCGACACTTTGT
100424 TGTGCAC
195 TGTGCAC
* *
100431 TTGGTTTTTAAAATACAATCTAGACAAGATGTATCG-AC--ATTTTTTATTTGTGTCGATACTTT
1 TTGGTTTTTAAAATACAATCTGGACAAGATGTATCGCACTTTTTTTTTATTTGTGTCGATACTTT
* *
100493 TTGTACAC-CAGTTTTCTCAAAAACCGGTATATTT
66 TTGTACACTTA-TTTTCTCAAAAACTGGTATATTT
100527 GAAAAATAAG
Statistics
Matches: 283, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
197 1 0.00
198 52 0.18
200 2 0.01
202 227 0.80
203 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (201 bp):
TTGGTTTTTAAAATACAATCTGGACAAGATGTATCGCACTTTTTTTTTATTTGTGTCGATACTTT
TTGTACACTTATTTTCTCAAAAACTGGTATATTTAGACCGGTTACATTAATAATTTACCTATTAC
ATTATAATTATATTTTTCGATGTTTTCGGAATCGACACTTGTTTTAAATGTATCGACACTTTGTT
GTGCAC
Found at i:103139 original size:15 final size:15
Alignment explanation
Indices: 103108--103148 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
103098 AGGAGGTTGT
103108 GGTTGAGAAGA-GTG
1 GGTTGAGAAGAGGTG
*
103122 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGGTG
103137 GGTTGAGAAGAG
1 GGTTGAGAAGAG
103149 ATTTAGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.27, C:0.00, G:0.54, T:0.20
Consensus pattern (15 bp):
GGTTGAGAAGAGGTG
Found at i:104048 original size:199 final size:199
Alignment explanation
Indices: 103520--104383 Score: 1462
Period size: 199 Copynumber: 4.3 Consensus size: 199
103510 GTTACATTGC
*
103520 TACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
103585 ACACTTTTTAGTGTACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * * * *
103650 TGTTTTGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGATCGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
103715 AATT
196 AATT
*
103719 TACATATTACATTATCATTATGGG-TTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
* *
103783 ACACTTATTAGTGCACTTGGTTTTGAAATACATTCTAGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * * * *
103848 TGTGTCGATACTTTTTGTACACATGTTTTCTAAAAAACCGGTATATTTAGACTGGTTAAATTGCT
131 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
103913 AATT
196 AATT
103917 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
103982 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
*
104047 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACCAGTATATTTAGACCGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
104112 AATT
196 AATT
* * * * *
104116 TACCTATTCCATTATCATTATGAGTTTTGATATTTTTTGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
* *
104181 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTATTAGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
104246 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACTC-GTATATTTAGACCGGTTATATTGC
131 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAAC-CGGTATATTTAGACCGGTTATATTGC
104310 TAATT
195 TAATT
* * * *
104315 TACCTATTACATTATAATTATGGTTTTCAATGTTTTTGGGATCGACACTTGTTATAATTGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
104380 ACAC
66 ACAC
104384 ATAAGTTTAC
Statistics
Matches: 626, Mismatches: 37, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
198 187 0.30
199 438 0.70
200 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (199 bp):
TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
AATT
Found at i:104752 original size:19 final size:19
Alignment explanation
Indices: 104728--104777 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
104718 TTACATTCAC
*
104728 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
104747 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
104766 ATACAAAATTAA
1 ATACAAAATTAA
104778 CCTTGCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:108231 original size:20 final size:20
Alignment explanation
Indices: 108183--108232 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
108173 CATTTATACA
108183 ACCTA-AAATATCATTTTCT
1 ACCTATAAATATCATTTTCT
*
108202 ACCTAT-AATATCATTTTTT
1 ACCTATAAATATCATTTTCT
108221 ACCTATAAATAT
1 ACCTATAAATAT
108233 TAAATAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 23 0.82
20 5 0.18
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (20 bp):
ACCTATAAATATCATTTTCT
Found at i:108769 original size:13 final size:13
Alignment explanation
Indices: 108751--108776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108741 CGATAATTAT
108751 TCTATTTAAATTC
1 TCTATTTAAATTC
108764 TCTATTTAAATTC
1 TCTATTTAAATTC
108777 ATAAAGTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
TCTATTTAAATTC
Found at i:108988 original size:11 final size:11
Alignment explanation
Indices: 108972--108996 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
108962 AAGTGTCGAT
108972 AGTTATATTAA
1 AGTTATATTAA
108983 AGTTATATTAA
1 AGTTATATTAA
108994 AGT
1 AGT
108997 CGACACTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (11 bp):
AGTTATATTAA
Found at i:109088 original size:188 final size:189
Alignment explanation
Indices: 108811--109173 Score: 520
Period size: 188 Copynumber: 1.9 Consensus size: 189
108801 ATTATCAATA
* *
108811 TTTCAACATATCCGGTAACGTTTTACTGGTTTTGTCAATTTTGATACATGTTTTATCATATTTTT
1 TTTCAACATATCCGGTAACGTTTTACCGGTTTTGTCAATTTTGATACAGGTTTTATCATATTTTT
* **
108876 ACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATAGACACTTTATAGGCGCTATAAC
66 ACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTATAGACACTTTATAGGCGCTATAAC
* * *
108941 TTCTTCTCTTTTAAATTCTAAAAGTGTCGATAGTTATATTAAAGTTATATTAAAGTCGACAC
131 TTATTCTCTTTTAAATTC--AAAGTCTCGATACTTATATTAAA-TTATATTAAAGTCGACAC
* * *
109003 TTTC-ACATATCC-GTATCG-TTTACCGGTTTTTTC-ATTGTTGA-ACCGGTTTTATCATATTTT
1 TTTCAACATATCCGGTAACGTTTTACCGGTTTTGTCAATT-TTGATACAGGTTTTATCATATTTT
* * * *
109063 TAGCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTGTCGACACTTTTTAGGCGCTATAA
65 TACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTATAGACACTTTATAGGCGCTATAA
109128 CTTATTCTCTTTTAAATTCAAAGTCTCGATACTTATATTAAATTAT
130 CTTATTCTCTTTTAAATTCAAAGTCTCGATACTTATATTAAATTAT
109174 CGACCACTTT
Statistics
Matches: 155, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
185 4 0.03
186 21 0.14
188 96 0.62
189 17 0.11
190 5 0.03
191 8 0.05
192 4 0.03
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.45
Consensus pattern (189 bp):
TTTCAACATATCCGGTAACGTTTTACCGGTTTTGTCAATTTTGATACAGGTTTTATCATATTTTT
ACCTGTTATATTGTTATAGATCGATACATTTTCATAAAGTATAGACACTTTATAGGCGCTATAAC
TTATTCTCTTTTAAATTCAAAGTCTCGATACTTATATTAAATTATATTAAAGTCGACAC
Done.