Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006539.1 Hibiscus syriacus cultivar Beakdansim tig00015966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101931
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:5921 original size:24 final size:24
Alignment explanation
Indices: 5885--5936 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
5875 CACGTAATCT
**
5885 TAAATATTTCTATATATAAAATT-A
1 TAAATATCGCTATA-ATAAAATTCA
*
5909 TAAATATCGCTATAATAGAATTCA
1 TAAATATCGCTATAATAAAATTCA
5933 TAAA
1 TAAA
5937 AGATGATCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
TAAATATCGCTATAATAAAATTCA
Found at i:7632 original size:20 final size:20
Alignment explanation
Indices: 7585--7632 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
7575 TATATGTTTT
*
7585 AAATTTTTTTTTTATTATTA
1 AAATTTTATTTTTATTATTA
7605 ATAA-TTTATTTTTATCTA-TA
1 A-AATTTTATTTTTAT-TATTA
7625 AAATTTTA
1 AAATTTTA
7633 AAATTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
20 18 0.75
21 4 0.17
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
AAATTTTATTTTTATTATTA
Found at i:7835 original size:9 final size:9
Alignment explanation
Indices: 7813--7847 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
7803 ACACAAATCC
7813 CAGATTTCGA
1 CAGATTT-GA
7823 CAGATTTGA
1 CAGATTTGA
7832 CAGATTTGA
1 CAGATTTGA
*
7841 TAGATTT
1 CAGATTT
7848 ATTGATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.37
Consensus pattern (9 bp):
CAGATTTGA
Found at i:11003 original size:3 final size:3
Alignment explanation
Indices: 10995--11095 Score: 112
Period size: 3 Copynumber: 33.0 Consensus size: 3
10985 TGATTCAATG
* * *
10995 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAG AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
11043 AATT AAA AACT AAT AAT GAT AAT AAT AAA AAC AAT AAT AAT AAT GAT
1 AA-T AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11090 AAT AAT
1 AAT AAT
11096 GATGATGATG
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
3 79 0.95
4 4 0.05
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:19935 original size:34 final size:36
Alignment explanation
Indices: 19866--19936 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 36
19856 ATTGAAAAAT
*
19866 ATTTATATATTTTCTTTAAAAAATTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
*
19902 ATTTATAT-TTTT-TTTACAAAATTGAAAAT-ATAAA
1 ATTTATATATTTTCTTTAAAAAATT-AAAATCATAAA
19936 A
1 A
19937 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 16 0.50
35 8 0.25
36 8 0.25
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.46
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
Found at i:23837 original size:16 final size:16
Alignment explanation
Indices: 23816--23846 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23806 CTATTCACGT
*
23816 GAATAGTGAATTTCGC
1 GAATAGTGAAATTCGC
23832 GAATAGTGAAATTCG
1 GAATAGTGAAATTCG
23847 ATCGGCGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (16 bp):
GAATAGTGAAATTCGC
Found at i:30881 original size:27 final size:27
Alignment explanation
Indices: 30843--30907 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
30833 GCTTTCTGTA
30843 ATTGGTGCCTTATATCCTTAGGTGTCT
1 ATTGGTGCCTTATATCCTTAGGTGTCT
30870 ATTGGTGCCTTATATCCTTAGGTGTCT
1 ATTGGTGCCTTATATCCTTAGGTGTCT
30897 ATTGGTGCCTT
1 ATTGGTGCCTT
30908 TCTCTTGGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.14, C:0.18, G:0.23, T:0.45
Consensus pattern (27 bp):
ATTGGTGCCTTATATCCTTAGGTGTCT
Found at i:39839 original size:25 final size:23
Alignment explanation
Indices: 39792--39846 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
39782 TGACACGGGA
39792 AAAAATAA-AATAAAATAAGTGAT
1 AAAAATAATAAT-AAATAAGTGAT
39815 AAAAATAATAATAAATAA-TGAT
1 AAAAATAATAATAAATAAGTGAT
* *
39837 GATAATAATA
1 AAAAATAATA
39847 TATATAAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.41
23 14 0.48
24 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.25
Consensus pattern (23 bp):
AAAAATAATAATAAATAAGTGAT
Found at i:39884 original size:24 final size:23
Alignment explanation
Indices: 39844--39888 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
39834 GATGATAATA
39844 ATATATATAAACGTTTTCAAAAAC
1 ATATATATAAACGTTTT-AAAAAC
*
39868 ATATAATATAAA-TTTTTAAAA
1 ATAT-ATATAAACGTTTTAAAA
39889 TGTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 8 0.42
25 7 0.37
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (23 bp):
ATATATATAAACGTTTTAAAAAC
Found at i:39921 original size:38 final size:36
Alignment explanation
Indices: 39856--40035 Score: 158
Period size: 38 Copynumber: 5.0 Consensus size: 36
39846 ATATATAAAC
*
39856 GTTTTCAAAAAC-ATATA--ATATAAATTTTTAAAAT
1 GTTTT-AAAAACTATATATTATATAAATTTTCAAAAT
*
39890 GTTTTTAAAAAACTATATATTATATATATTTTCAAAAT
1 G-TTTT-AAAAACTATATATTATATAAATTTTCAAAAT
* *
39928 GGTTTTTAAAAATTATATATTATATAAATGTTTTCATAAT
1 -G-TTTTAAAAACTATATATTATATAAA--TTTTCAAAAT
* * * * *
39968 G-TTTCAAAAGTATCTATTATAT--ATTTTAAAAAC
1 GTTTTAAAAACTATATATTATATAAATTTTCAAAAT
40001 GTTTTCAAAAACTATATATTATAT-AATTTTCAAAA
1 GTTTT-AAAAACTATATATTATATAAATTTTCAAAA
40036 AATATATTTT
Statistics
Matches: 120, Mismatches: 16, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
33 8 0.07
34 4 0.03
35 26 0.22
36 14 0.12
37 18 0.15
38 34 0.28
39 7 0.06
40 9 0.08
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.45
Consensus pattern (36 bp):
GTTTTAAAAACTATATATTATATAAATTTTCAAAAT
Found at i:40017 original size:72 final size:75
Alignment explanation
Indices: 39852--40263 Score: 212
Period size: 75 Copynumber: 5.4 Consensus size: 75
39842 TAATATATAT
39852 AAACGTTTTCAAAAAC-ATATA--ATATAAATTTTTAAAATGTTTTTAAAAAACTATATATTATA
1 AAACGTTTTCAAAAACTATATATTATATAAATTTTTAAAATG-TTTTAAAAAACTATATATTATA
39914 TATATTTTCAA
65 TATATTTTCAA
** * * * * * *
39925 AATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAATG-TTT-CAAAAGTATCTA-T-T
1 AAACGTTTTCAAAAACTATATATTATATAAAT-TTTT-AAAATGTTTTAAAAAACTATATATTAT
39986 ATATATTTT-AA
64 ATATATTTTCAA
* *
39997 AAACGTTTTCAAAAACTATATATTATAT-AATTTTCAAAAAATATATTTTCAAAATGGTTTTTAA
1 AAACGTTTTCAAAAACTATATATTATATAAATTTT---TAAA-ATGTTTT----A--------AA
* *
40061 AAATTATATATTATATAAATGTTTTC-A
50 AAACTATATATTATATATAT-TTT-CAA
* * * * * *
40088 TAACGTTTT-AAAAAGTAT-TCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATA
1 AAACGTTTTCAAAAACTATAT-ATTATATAAATTTTTAAAATGTTTTAAAAAACTATATATTATA
40151 TA-ATTTTCAA
65 TATATTTTCAA
** * * * *
40161 AAATATTTT-AAAAACTATATAATATACATATTTTCAAAAAATGTTTT---AAACTATATATTAT
1 AAACGTTTTCAAAAACTATATATTATATAAATTTT--TAAAATGTTTTAAAAAACTATATATTAT
40222 ATATGTATTTTCAA
64 ATA--TATTTTCAA
** * *
40236 AAACAATTT-ACAAACTATATAATATATA
1 AAACGTTTTCAAAAACTATATATTATATA
40264 TGTGTATATA
Statistics
Matches: 265, Mismatches: 37, Indels: 72
0.71 0.10 0.19
Matches are distributed among these distances:
70 3 0.01
71 3 0.01
72 46 0.17
73 54 0.20
74 12 0.05
75 69 0.26
76 11 0.04
77 4 0.02
78 5 0.02
87 14 0.05
88 5 0.02
89 7 0.03
90 18 0.07
91 14 0.05
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (75 bp):
AAACGTTTTCAAAAACTATATATTATATAAATTTTTAAAATGTTTTAAAAAACTATATATTATAT
ATATTTTCAA
Found at i:40034 original size:25 final size:25
Alignment explanation
Indices: 40002--40078 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
39992 TTTAAAAACG
*
40002 TTTTCAAAAACTATATATTATATAA
1 TTTTCAAAAAATATATATTATATAA
* * **
40027 TTTTCAAAAAATATATTTTCAAAATGG
1 TTTTCAAAAAATATATATT--ATATAA
* *
40054 TTTTTAAAAATTATATATTATATAA
1 TTTTCAAAAAATATATATTATATAA
40079 ATGTTTTCAT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
25 20 0.51
27 19 0.49
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (25 bp):
TTTTCAAAAAATATATATTATATAA
Found at i:40046 original size:15 final size:16
Alignment explanation
Indices: 40021--40050 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
40011 ACTATATATT
40021 ATATAATTTTCAAAAA
1 ATATAATTTTCAAAAA
40037 ATAT-ATTTTCAAAA
1 ATATAATTTTCAAAA
40051 TGGTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAATTTTCAAAAA
Found at i:40048 original size:124 final size:127
Alignment explanation
Indices: 39913--40163 Score: 447
Period size: 124 Copynumber: 2.0 Consensus size: 127
39903 TATATATTAT
* *
39913 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAATG-TTTCAAAA
1 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTAAAAA
39977 GTA-TC--TATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 GTATTCATTA-TATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
40037 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTAAAAA
1 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTAAAAA
40102 GTATTCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 GTATTCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
40164 TATTTTAAAA
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
124 55 0.45
125 10 0.08
126 2 0.02
127 52 0.43
128 2 0.02
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (127 bp):
ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTAAAAA
GTATTCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
Found at i:40098 original size:38 final size:38
Alignment explanation
Indices: 40055--40263 Score: 166
Period size: 38 Copynumber: 5.6 Consensus size: 38
40045 TCAAAATGGT
* * * *
40055 TTTTAAAAATTATATATTATATAAATGTTTTCATAACG
1 TTTTAAAAACTATATATTATATAAATATTTTAAAAACG
*
40093 TTTTAAAAAGTAT-TCATTATAT--ATATTTTAAAAACG
1 TTTTAAAAACTATAT-ATTATATAAATATTTTAAAAACG
* **
40129 TTTTCAAAAACTATATATTATAT-AAT-TTTCAAAAATA
1 TTTT-AAAAACTATATATTATATAAATATTTTAAAAACG
* *
40166 TTTTAAAAACTATATA--ATATACATATTTTCAAAAAATG
1 TTTTAAAAACTATATATTATATAAATATTTT--AAAAACG
** *
40204 TTTT--AAACTATATATTATATATGTATTTTCAAAAACA
1 TTTTAAAAACTATATATTATATAAATATTTT-AAAAACG
* * *
40241 ATTTACAAACTATATAATATATA
1 TTTTAAAAACTATATATTATATA
40264 TGTGTATATA
Statistics
Matches: 141, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
34 4 0.03
35 2 0.01
36 40 0.28
37 36 0.26
38 43 0.30
39 16 0.11
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (38 bp):
TTTTAAAAACTATATATTATATAAATATTTTAAAAACG
Found at i:40099 original size:162 final size:164
Alignment explanation
Indices: 39879--40202 Score: 378
Period size: 162 Copynumber: 2.0 Consensus size: 164
39869 TATAATATAA
* * *
39879 ATTTTTAAAATGTTTTTAAAAAACTATATATTATATATATTTTCAAAATGGTTTTTAAAAATTAT
1 ATTTTCAAAATGTTTTTAAAAAACTATATATTATATATATTTTCAAAATCGTTTTTAAAAAGTAT
* * * * * * *
39944 AT-ATTATATAAATGTTTTCATAATG-TTTC-AAAAGTATCTATTATAT-ATTTT-AAAAACGTT
66 -TCATTATAT--ATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAACATT
* *
40004 TTCAAAAACTATATATTATATA-ATTTTCAAAAAATAT
128 TT-AAAAACTATATAATATACATATTTTCAAAAAATAT
* * *
40041 ATTTTCAAAATGGTTTTT-AAAAATTATATATTATATAAATGTTTTCATAA-CG-TTTTAAAAAG
1 ATTTTCAAAAT-GTTTTTAAAAAACTATATATTATAT--ATATTTTCAAAATCGTTTTTAAAAAG
*
40103 TATTCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAATATT
63 TATTCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAACATT
40168 TTAAAAACTATATAATATACATATTTTCAAAAAAT
128 TTAAAAACTATATAATATACATATTTTCAAAAAAT
40203 GTTTTAAACT
Statistics
Matches: 137, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
160 10 0.07
161 5 0.04
162 61 0.45
163 29 0.21
164 32 0.23
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (164 bp):
ATTTTCAAAATGTTTTTAAAAAACTATATATTATATATATTTTCAAAATCGTTTTTAAAAAGTAT
TCATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAACATTTTA
AAAACTATATAATATACATATTTTCAAAAAATAT
Found at i:40157 original size:36 final size:37
Alignment explanation
Indices: 40037--40264 Score: 207
Period size: 36 Copynumber: 6.1 Consensus size: 37
40027 TTTTCAAAAA
** *
40037 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTAT
1 ATATATTTTCAAAAACG-TTTTAAAAACTATATATTAT
* * *
40075 ATAAATGTTTTC-ATAACGTTTTAAAAAGTAT-TCATTAT
1 AT--ATATTTTCAAAAACGTTTTAAAAACTATAT-ATTAT
40113 ATATATTTT-AAAAACGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTT-AAAAACTATATATTAT
** *
40150 ATA-ATTTTCAAAAATATTTTAAAAACTATATAATAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
* *
40186 ACATATTTTCAAAAAATGTTTT--AAACTATATATTAT
1 ATATATTTTC-AAAAACGTTTTAAAAACTATATATTAT
** * *
40222 ATATGTATTTTCAAAAACAATTTACAAACTATATAATAT
1 ATA--TATTTTCAAAAACGTTTTAAAAACTATATATTAT
40261 ATAT
1 ATAT
40265 GTGTATATAT
Statistics
Matches: 158, Mismatches: 19, Indels: 27
0.77 0.09 0.13
Matches are distributed among these distances:
36 52 0.33
37 41 0.26
38 39 0.25
39 19 0.12
40 7 0.04
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (37 bp):
ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
Found at i:40201 original size:75 final size:73
Alignment explanation
Indices: 40039--40261 Score: 213
Period size: 75 Copynumber: 3.0 Consensus size: 73
40029 TTCAAAAAAT
** * * * *
40039 ATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTC-ATAACGTTTTAAAAAG
1 ATATTTTCAAAAACG-TTTTAAAAACTATATATTATAT-AA--TTTTCAAAAACATTTTAAAAAC
* *
40103 TAT-TCATTATAT
62 TATAT-AATATAC
*
40115 ATATTTT-AAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAATATTTTAAAAACTAT
1 ATATTTTCAAAAACGTTTT-AAAAACTATATATTATATAATTTTCAAAAACATTTTAAAAACTAT
40179 ATAATATAC
65 ATAATATAC
* * *
40188 ATATTTTCAAAAAATGTTTT--AAACTATATATTATATATGTATTTTCAAAAACAATTTACAAAC
1 ATATTTTC-AAAAACGTTTTAAAAACTATATATTATATA---ATTTTCAAAAACATTTTAAAAAC
40251 TATATAATATA
62 TATATAATATA
40262 TATGTGTATA
Statistics
Matches: 126, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
72 22 0.17
73 27 0.21
74 7 0.06
75 63 0.50
76 7 0.06
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (73 bp):
ATATTTTCAAAAACGTTTTAAAAACTATATATTATATAATTTTCAAAAACATTTTAAAAACTATA
TAATATAC
Found at i:40990 original size:84 final size:83
Alignment explanation
Indices: 40878--41329 Score: 527
Period size: 84 Copynumber: 5.4 Consensus size: 83
40868 GAGTCTTTGG
* * *
40878 CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGGAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
40943 CTCGAAGGTCTTTTGGTCA
66 CTCGAAGGTC-TTTGGTCA
* * *
40962 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGA
* * **
41026 ACTCAAAGGTCTTTGTTGG
65 ACTCGAAGGTCTTTGGTCA
* * * ** *
41045 CAAACAACCCTTCTAGACTTAAGTTGTATTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
**
41110 CTCGAAGGTCTTTGGTTGG
66 CTCGAAGGTCTTTGG-TCA
* * * * *
41129 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGTGT-GATCG
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT-GCCTTGGAGCTGAGCGTAG-TCG
* **
41193 AACTTGGGGGTCTTTGG---
64 AACTCGAAGGTCTTTGGTCA
* * *
41210 CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
41275 CTCGAAGGTCTTTGGTGA
66 CTCGAAGGTCTTTGGTCA
* * *
41293 CAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATG
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATG
41330 CACACGATAT
Statistics
Matches: 309, Mismatches: 50, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
80 30 0.10
81 40 0.13
82 2 0.01
83 102 0.33
84 103 0.33
85 32 0.10
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (83 bp):
CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
CTCGAAGGTCTTTGGTCA
Found at i:41080 original size:167 final size:164
Alignment explanation
Indices: 40794--41329 Score: 630
Period size: 165 Copynumber: 3.2 Consensus size: 164
40784 ACAATTTTAT
* * * * * * * * * *
40794 TGACAAATAACCTTTCTTGCCATGAGTTATGTTGTAAATGATATGA-CCTCGAAGTTGAGTGTAA
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGT-ACCCTCGAAGCTGAGCGTGA
** *
40858 TCGAACTC-GTGAGTCTTTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCC
65 TCGAACTCAAAG-GTCTTTGGCAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTGCC
*
40922 TTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTTTGG
129 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG
* * * * *
40959 TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCGTTG-AGCTGAGCGT-AG
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGCGTGA-
* * * * ** *
41022 TCGAACTCAAAGGTCTTTGTTGGCAAACAACCCTTCTAGACTTAAGTTGTATTGCAAATGATATG
65 TCGAACTCAAAGGTC--T-TTGGCAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTG
41087 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
127 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
* * * * *
41125 TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGTGTGA
1 -TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGCGTGA
**** * *
41190 TCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT
65 TCGAACTCAAAGGTCTTTGGCAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTGCCT
41255 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
130 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
*
41290 TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATG
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATG
41330 CACACGATAT
Statistics
Matches: 311, Mismatches: 51, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
163 1 0.00
164 54 0.17
165 116 0.37
166 7 0.02
167 112 0.36
168 20 0.06
169 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (164 bp):
TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGCGTGAT
CGAACTCAAAGGTCTTTGGCAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTGCCTT
GGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
Found at i:41267 original size:248 final size:249
Alignment explanation
Indices: 40874--41329 Score: 623
Period size: 248 Copynumber: 1.8 Consensus size: 249
40864 TCGTGAGTCT
* * * *
40874 TTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGGAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTCCCTCGAAGCTGAGCGGAGT
* * * *
40939 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
66 CGAACTCGAAGGTCTTTTGG--ACAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTG
* *
41004 CCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGCAAACAACCCTTCTAGACTTAAGT
129 CCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAAACAACCCTTCTAGACTTAAGT
*
41069 TGTATTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
194 TATATTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
* *
41125 TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGTGTGA
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGT-CCCTCGAAGCTGAGCG-GA
* ** * *
41190 -TCGAACTTGGGGGTC-TTTGG-CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
64 GTCGAACTCGAAGGTCTTTTGGACAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTG
* * * * *
41252 CC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAG
129 CCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAAACAACCCTTCTAGACTTAAG
*
41316 TTATGTTGCAAATG
193 TTATATTGCAAATG
41330 CACACGATAT
Statistics
Matches: 178, Mismatches: 24, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
247 2 0.01
248 102 0.57
251 48 0.27
252 24 0.13
253 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (249 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTCCCTCGAAGCTGAGCGGAGT
CGAACTCGAAGGTCTTTTGGACAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATGTGCC
GTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAAACAACCCTTCTAGACTTAAGTTA
TATTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
Found at i:41645 original size:105 final size:104
Alignment explanation
Indices: 41349--42025 Score: 1147
Period size: 105 Copynumber: 6.4 Consensus size: 104
41339 TCCTTTGCTA
* * *
41349 TGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAGATTGGCTCTG-AATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTG
*
41414 AAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGTTG
64 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* * **
41455 TGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCATG
1 TGAAGTTGAGATTGGCTCTG-AATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTG
41520 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
64 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
41561 TGAAGTTGAGATTGGCTCTGAATTGACGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
1 TGAAGTTGAGATTGGCTCTGAATTGA-GAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
41626 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
65 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
41666 TGAAGTTGAGATTGGCTCTGAATTGACGAAATGTTTATTGACAACCAGCGGTCCCTTCGTTGTGA
1 TGAAGTTGAGATTGGCTCTGAATTGA-GAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
41731 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
65 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
41771 TGAAGTTGAGATTGGCTCTGAATTGACGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
1 TGAAGTTGAGATTGGCTCTGAATTGA-GAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
*
41836 AGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTG
65 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* *
41876 TGAAGTTGAAATTGGCTCTGAATTTGAGAAGTGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
1 TGAAGTTGAGATTGGCTCTGAA-TTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
41941 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
65 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
41981 TGAAGTTGAGATTGGCTCTGAATTTGAGAAGTTGTTTGTTGACAA
1 TGAAGTTGAGATTGGCTCTGAA-TTGAGAA-ATGTTTGTTGACAA
42026 ACAACTTTTC
Statistics
Matches: 554, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
105 411 0.74
106 143 0.26
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (104 bp):
TGAAGTTGAGATTGGCTCTGAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGAA
GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
Found at i:47249 original size:22 final size:24
Alignment explanation
Indices: 47221--47276 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
47211 GACACGGGAA
47221 AAAATAA-AATAAAATAA-G-TGAT
1 AAAATAATAAT-AAATAATGATGAT
47243 AAAATAATAATAAATAATGATGAT
1 AAAATAATAATAAATAATGATGAT
47267 AATAATAATA
1 AA-AATAATA
47277 TATATAAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.43
23 4 0.13
24 6 0.20
25 7 0.23
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (24 bp):
AAAATAATAATAAATAATGATGAT
Found at i:47339 original size:38 final size:37
Alignment explanation
Indices: 47286--47650 Score: 172
Period size: 38 Copynumber: 9.6 Consensus size: 37
47276 ATATATAAAC
* * *
47286 GTTTTCAAAAC-ATATAATATATAAATTTTTTAAAAT
1 GTTTTAAAAACTATATATTATATAAATTTTTCAAAAT
*
47322 GTTTTAAAAAACTATATATTATATATA-TTTTCAAAAT
1 GTTTT-AAAAACTATATATTATATAAATTTTTCAAAAT
* *
47359 GGTTTTTAAAAATTATAT-TTATATAAATGTTTTCATAAT
1 -G-TTTTAAAAACTATATATTATATAAAT-TTTTCAAAAT
* * * * *
47398 GTTTTCAAAAGTATCTATTATAT--A-TTTTAAAAAC
1 GTTTTAAAAACTATATATTATATAAATTTTTCAAAAT
47432 GTTTTCAAAAACTATATATTATAT-AA-TTTTCAAAAATAT
1 GTTTT-AAAAACTATATATTATATAAATTTTTC--AAA-AT
* ** * * *
47471 ATTTTCAAAATGGTTTTTAAAAATTATATATTATAAATGTTTTCATAAC
1 GTTTT-AAAA-----ACT--ATA-TAT-TA-TATAAAT-TTTTCAAAAT
* * *
47520 GTTTTAAAAAGTAT-TCATTATAT--A-TTTTAAAAAC
1 GTTTTAAAAACTATAT-ATTATATAAATTTTTCAAAAT
47554 GTTTTCAAAAACTATATATTATAT-AA-TTTTCAAAAAT
1 GTTTT-AAAAACTATATATTATATAAATTTTTC-AAAAT
* *
47591 ATTTTAAAAACTATATA--ATATACATATTTTCAAAAAAT
1 GTTTTAAAAACTATATATTATATAAAT-TTTTC--AAAAT
47629 GTTTT--AAACTATATATTATATA
1 GTTTTAAAAACTATATATTATATA
47651 TGTATTTTCA
Statistics
Matches: 257, Mismatches: 36, Indels: 70
0.71 0.10 0.19
Matches are distributed among these distances:
34 29 0.11
35 31 0.12
36 40 0.16
37 47 0.18
38 51 0.20
39 26 0.10
40 2 0.01
41 1 0.00
43 1 0.00
44 1 0.00
46 2 0.01
47 3 0.01
48 6 0.02
49 8 0.03
50 4 0.02
52 5 0.02
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.45
Consensus pattern (37 bp):
GTTTTAAAAACTATATATTATATAAATTTTTCAAAAT
Found at i:47442 original size:110 final size:109
Alignment explanation
Indices: 47312--47622 Score: 351
Period size: 122 Copynumber: 2.7 Consensus size: 109
47302 ATATATAAAT
* * *
47312 TTTTTAAAATGTTTTAAAAAACTATATATTATATATATTTTCAAAATGGTTTTTAAAAATTATAT
1 TTTTAAAAACGTTTTCAAAAACTATATATTATATATATTTTCAAAATGGTTTTTAAAAATTATAT
* * *
47377 TTATATAAATGTTTTCATAATGTTTTCAAAAGTA-TCTATTATATA
66 AT-TATAAATGTTTTCATAACGTTTTAAAAAGTATTC-ATTATATA
47422 TTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAATATATTTTCAAAATGGTTT
1 TTTTAAAAACGTTTTCAAAAAC--TATA-TAT-T-A---T-----ATATATTTTCAAAATGGTTT
47487 TTAAAAATTATATATTATAAATGTTTTCATAACGTTTTAAAAAGTATTCATTATATA
53 TTAAAAATTATATATTATAAATGTTTTCATAACGTTTTAAAAAGTATTCATTATATA
* *
47544 TTTTAAAAACGTTTTCAAAAACTATATATTATATA-ATTTTCAAAAAT--ATTTTAAAAACTATA
1 TTTTAAAAACGTTTTCAAAAACTATATATTATATATATTTTC-AAAATGGTTTTTAAAAATTATA
* * *
47606 TAATATACATATTTTCA
65 TATTATAAATGTTTTCA
47623 AAAAATGTTT
Statistics
Matches: 175, Mismatches: 11, Indels: 33
0.80 0.05 0.15
Matches are distributed among these distances:
107 27 0.15
108 6 0.03
109 8 0.05
110 19 0.11
112 4 0.02
113 3 0.02
114 2 0.01
115 1 0.01
117 1 0.01
118 2 0.01
119 3 0.02
120 4 0.02
122 59 0.34
123 36 0.21
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (109 bp):
TTTTAAAAACGTTTTCAAAAACTATATATTATATATATTTTCAAAATGGTTTTTAAAAATTATAT
ATTATAAATGTTTTCATAACGTTTTAAAAAGTATTCATTATATA
Found at i:47476 original size:14 final size:15
Alignment explanation
Indices: 47452--47480 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
47442 ACTATATATT
47452 ATATAATTTTCAAAA
1 ATATAATTTTCAAAA
47467 ATAT-ATTTTCAAAA
1 ATATAATTTTCAAAA
47481 TGGTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATAATTTTCAAAA
Found at i:47562 original size:122 final size:123
Alignment explanation
Indices: 47344--47592 Score: 448
Period size: 122 Copynumber: 2.0 Consensus size: 123
47334 TATATATTAT
* * *
47344 ATATATTTTCAAAATGGTTTTTAAAAATTATATTTATATAAATGTTTTCATAATGTTTTCAAAAG
1 ATATATTTTCAAAATGGTTTTTAAAAATTATATATATATAAATGTTTTCATAACGTTTTAAAAAG
47409 TATCTATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
66 TATCTATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
47467 ATATATTTTCAAAATGGTTTTTAAAAATTATATAT-TATAAATGTTTTCATAACGTTTTAAAAAG
1 ATATATTTTCAAAATGGTTTTTAAAAATTATATATATATAAATGTTTTCATAACGTTTTAAAAAG
47531 TAT-TCATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
66 TATCT-ATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
47589 ATAT
1 ATAT
47593 TTTAAAAACT
Statistics
Matches: 122, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
121 1 0.01
122 87 0.71
123 34 0.28
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (123 bp):
ATATATTTTCAAAATGGTTTTTAAAAATTATATATATATAAATGTTTTCATAACGTTTTAAAAAG
TATCTATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
Found at i:47600 original size:36 final size:36
Alignment explanation
Indices: 47485--47689 Score: 172
Period size: 36 Copynumber: 5.6 Consensus size: 36
47475 TCAAAATGGT
* * *
47485 TTTTAAAAATTATATATTATA-AATGTTTTC-ATAACG
1 TTTTAAAAACTATATATTATATAA--TTTTCAAAAACA
* *
47521 TTTTAAAAAGTAT-TCATTATAT-ATTTT-AAAAACG
1 TTTTAAAAACTATAT-ATTATATAATTTTCAAAAACA
*
47555 TTTTCAAAAACTATATATTATATAATTTTCAAAAATA
1 TTTT-AAAAACTATATATTATATAATTTTCAAAAACA
* *
47592 TTTTAAAAACTATATAATATACATATTTTCAAAAA-A
1 TTTTAAAAACTATATATTATATA-ATTTTCAAAAACA
*
47628 TGTTT-TAAACTATATATTATATATGTATTTTCAAAAACA
1 T-TTTAAAAACTATATATTATATA---ATTTTCAAAAACA
* * *
47667 ATTTACAAACTATATAATATATA
1 TTTTAAAAACTATATATTATATA
47690 TGTGTATATA
Statistics
Matches: 143, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
34 13 0.09
35 16 0.11
36 59 0.41
37 23 0.16
38 15 0.10
39 17 0.12
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (36 bp):
TTTTAAAAACTATATATTATATAATTTTCAAAAACA
Found at i:48564 original size:28 final size:27
Alignment explanation
Indices: 48492--48577 Score: 127
Period size: 27 Copynumber: 3.1 Consensus size: 27
48482 TTTATAAAAT
48492 AGTTGACTCGAATATTTTTTCGATTTG
1 AGTTGACTCGAATATTTTTTCGATTTG
*
48519 AGTTGACTTGAATATTTTTTCGATTTG
1 AGTTGACTCGAATATTTTTTCGATTTG
* * *
48546 AGTTGACTCAAATTTTTTTTTCTATTTG
1 AGTTGACTCGAA-TATTTTTTCGATTTG
48574 AGTT
1 AGTT
48578 TATAAAATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 36 0.68
28 17 0.32
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.52
Consensus pattern (27 bp):
AGTTGACTCGAATATTTTTTCGATTTG
Found at i:48585 original size:27 final size:28
Alignment explanation
Indices: 48506--48587 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
48496 GACTCGAATA
** *
48506 TTTTTTCGATTTGAGTTGACTTGAA-TA
1 TTTTTTCGATTTGAGTTGACTAAAATTT
*
48533 TTTTTTCGATTTGAGTTGACTCAAATTT
1 TTTTTTCGATTTGAGTTGACTAAAATTT
* *
48561 TTTTTTCTATTTGAGTTTA-TAAAATTT
1 TTTTTTCGATTTGAGTTGACTAAAATTT
48588 AAATCAAGTC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 30 0.62
28 18 0.38
ACGTcount: A:0.23, C:0.07, G:0.13, T:0.56
Consensus pattern (28 bp):
TTTTTTCGATTTGAGTTGACTAAAATTT
Found at i:48868 original size:148 final size:148
Alignment explanation
Indices: 48565--48833 Score: 373
Period size: 146 Copynumber: 1.8 Consensus size: 148
48555 AAATTTTTTT
**
48565 TTCTATTTGAGTTTATAAAATTTAAATCAAGTCGAATTAAATTGAATTTTTGAGTTTCTGTTTAA
1 TTCTATTTGAGTTTATAAAATTTAAATCAAGTAAAATTAAATTGAATTTTTGAGTTTCTGTTTAA
* * * * **
48630 ATTTAATTATAAATATTTATCATATTATAATATTATTTGATTTTAATTCAGTTTAGTTTATAAAA
66 ATTTAATTATAAATATTTATAATACTACAATATTATTTGATTCTAATTCAGAATAGTTTATAAAA
** * *
48695 TAGTTGACTCAAACTTTT
131 TAGTACAATCAAACTTTC
* *
48713 TTCTATTTGAGTTTATAAATTTTAAATCAAGTAAAATTGAATTGAA-TTTTGAGTTTCTGTTT-A
1 TTCTATTTGAGTTTATAAAATTTAAATCAAGTAAAATTAAATTGAATTTTTGAGTTTCTGTTTAA
* *
48776 ATTTAATTATAAATATTTATAATACTACAATATTATTTTATTCTAATTTA-AATAGTTT
66 ATTTAATTATAAATATTTATAATACTACAATATTATTTGATTCTAATTCAGAATAGTTT
48834 TTAACCATAT
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
145 6 0.06
146 45 0.41
147 16 0.15
148 42 0.39
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (148 bp):
TTCTATTTGAGTTTATAAAATTTAAATCAAGTAAAATTAAATTGAATTTTTGAGTTTCTGTTTAA
ATTTAATTATAAATATTTATAATACTACAATATTATTTGATTCTAATTCAGAATAGTTTATAAAA
TAGTACAATCAAACTTTC
Found at i:49373 original size:35 final size:36
Alignment explanation
Indices: 49312--49392 Score: 128
Period size: 35 Copynumber: 2.3 Consensus size: 36
49302 GGGTTTGGGC
* *
49312 ATGTAATTGAAGTATTTTTGGAATTTGAGGTTTAGA
1 ATGTAATTGAAGCATTTTTGGAATTTGAGGTCTAGA
*
49348 ATGTAATTGAAGCA-TTTTGGAATTTGGGGTCTAGA
1 ATGTAATTGAAGCATTTTTGGAATTTGAGGTCTAGA
49383 ATGTAATTGA
1 ATGTAATTGA
49393 TGATTGTGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 29 0.69
36 13 0.31
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.41
Consensus pattern (36 bp):
ATGTAATTGAAGCATTTTTGGAATTTGAGGTCTAGA
Found at i:54249 original size:19 final size:19
Alignment explanation
Indices: 54227--54267 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
54217 AAAAAAATTG
54227 TTTTGTTTATTTTCTT-TAT
1 TTTTGTTTATTTT-TTCTAT
*
54246 TTTTTTTTATTTTTTCTAT
1 TTTTGTTTATTTTTTCTAT
54265 TTT
1 TTT
54268 GATCACTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.10, C:0.05, G:0.02, T:0.83
Consensus pattern (19 bp):
TTTTGTTTATTTTTTCTAT
Found at i:60980 original size:16 final size:16
Alignment explanation
Indices: 60956--60989 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
60946 TATCGCCGAC
*
60956 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
60972 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
60988 CG
1 CG
60990 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:66839 original size:15 final size:15
Alignment explanation
Indices: 66821--66876 Score: 67
Period size: 15 Copynumber: 3.6 Consensus size: 15
66811 TAACCGGTTT
66821 CGGTTTTAAAAAAAC
1 CGGTTTTAAAAAAAC
*
66836 CGGTTTTTTTAAAAAAC
1 CGG--TTTTAAAAAAAC
*
66853 CGGTTATAAAAAAAC
1 CGGTTTTAAAAAAAC
*
66868 CGATTTTAA
1 CGGTTTTAA
66877 TATTCCAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
15 20 0.59
17 14 0.41
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.32
Consensus pattern (15 bp):
CGGTTTTAAAAAAAC
Found at i:66849 original size:17 final size:17
Alignment explanation
Indices: 66824--66874 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
66814 CCGGTTTCGG
66824 TTTTAAAAAAACCGGTT
1 TTTTAAAAAAACCGGTT
*
66841 TTTTTAAAAAACCGG--
1 TTTTAAAAAAACCGGTT
* *
66856 TTATAAAAAAACCGATT
1 TTTTAAAAAAACCGGTT
66873 TT
1 TT
66875 AATATTCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 12 0.43
17 16 0.57
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (17 bp):
TTTTAAAAAAACCGGTT
Found at i:67070 original size:21 final size:21
Alignment explanation
Indices: 67046--67098 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
67036 ACACTTAGGG
67046 AACCGATTCCCTATGAGAGGA
1 AACCGATTCCCTATGAGAGGA
*
67067 AACCGATTCCCTATGAGAGGG
1 AACCGATTCCCTATGAGAGGA
*
67088 TACCGATTCCC
1 AACCGATTCCC
67099 CCATGCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (21 bp):
AACCGATTCCCTATGAGAGGA
Found at i:67315 original size:13 final size:13
Alignment explanation
Indices: 67294--67348 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
67284 AAGTTCGATA
*
67294 AATTCAAATACTT
1 AATTGAAATACTT
67307 AATTGAAATACTT
1 AATTGAAATACTT
* *
67320 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
67334 AATTGAAATACTT
1 AATTGAAATACTT
67347 AA
1 AA
67349 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:67430 original size:32 final size:33
Alignment explanation
Indices: 67334--67432 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
67324 AACTCAACAT
* * *
67334 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
67367 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
67400 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
67432 A
1 A
67433 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:67451 original size:21 final size:21
Alignment explanation
Indices: 67427--67466 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
67417 ACTTCAAGTT
67427 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
67448 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
67467 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:75865 original size:16 final size:13
Alignment explanation
Indices: 75828--75853 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75818 GTAATTATAA
75828 TATAATATTTATT
1 TATAATATTTATT
75841 TATAATATTTATT
1 TATAATATTTATT
75854 GTTATTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATAATATTTATT
Found at i:78215 original size:132 final size:133
Alignment explanation
Indices: 77972--78240 Score: 384
Period size: 132 Copynumber: 2.0 Consensus size: 133
77962 TTCAATGAAA
* *
77972 AAAATTTATGAATAATTAAGAAGAACAATCTCCAGAGATTCAAAAATTAAAGATACAAGCATTTT
1 AAAATTTATGAATAATTAAGAAGAACAATCTCAAGAGATTCAAAAATTAAAGATACAAACATTTT
* * *
78037 CAATACAACAACCTGACATTTATGGGTGTAGAGATACTTTCCAAAAAATATTTTGGGAAATAATG
66 CAATACAACAACCTAACATTTATGGGTGTAAAGATACTTTACAAAAAATATTTTGGGAAATAATG
78102 -TT
131 TTT
* * *
78104 AAAATTTATGAATAATTAAGGAA-AATAATCTCAAGAGATTCAAAAGTTAATGATACAAACATTT
1 AAAATTTATGAATAATTAA-GAAGAACAATCTCAAGAGATTCAAAAATTAAAGATACAAACATTT
* * *
78168 TCAATTA-ACCAACTTAACATTTAAT-GGTGTAAAGATACTTTAGAAAAAATATTTTGGGAAATA
65 TCAA-TACAACAACCTAACATTT-ATGGGTGTAAAGATACTTTACAAAAAATATTTTGGGAAATA
78231 ATGTTT
128 ATGTTT
78237 AAAA
1 AAAA
78241 GTAGATATTT
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
132 109 0.89
133 13 0.11
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (133 bp):
AAAATTTATGAATAATTAAGAAGAACAATCTCAAGAGATTCAAAAATTAAAGATACAAACATTTT
CAATACAACAACCTAACATTTATGGGTGTAAAGATACTTTACAAAAAATATTTTGGGAAATAATG
TTT
Found at i:86222 original size:27 final size:27
Alignment explanation
Indices: 86192--86255 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
86182 ATGGCAAAAA
* *
86192 TGATGGCGGCGAGAATGGTGGTGGCGG
1 TGATGGCGGCGAGAACGGGGGTGGCGG
*
86219 TGATGGCGGCGAGAACGGGGGTGGTGG
1 TGATGGCGGCGAGAACGGGGGTGGCGG
86246 TGATGGCGGC
1 TGATGGCGGC
86256 AAAGGGAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.14, C:0.12, G:0.56, T:0.17
Consensus pattern (27 bp):
TGATGGCGGCGAGAACGGGGGTGGCGG
Found at i:91414 original size:29 final size:30
Alignment explanation
Indices: 91380--91446 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 30
91370 ACTGTTCAAC
91380 CATTTAAAATTATGTTTTT-CTATTTTAGT
1 CATTTAAAATTATGTTTTTACTATTTTAGT
* ** * *
91409 CCTTTAACTTTCTGTTTTTATTATTTTAGT
1 CATTTAAAATTATGTTTTTACTATTTTAGT
91439 CATTTAAA
1 CATTTAAA
91447 TTTCCGTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
29 15 0.50
30 15 0.50
ACGTcount: A:0.25, C:0.10, G:0.06, T:0.58
Consensus pattern (30 bp):
CATTTAAAATTATGTTTTTACTATTTTAGT
Found at i:91436 original size:30 final size:30
Alignment explanation
Indices: 91280--91494 Score: 156
Period size: 30 Copynumber: 7.3 Consensus size: 30
91270 TTATTTATAA
* *
91280 TTACTATTTTAGTCCTTTTAGA-TTCTATTT
1 TTACTATTTTAGTCC-TTTAAATTTCTGTTT
**
91310 TTACTA-TTTAGTCCTTTAAATGTT-TGTAA
1 TTACTATTTTAGTCCTTTAAAT-TTCTGTTT
* * * *
91339 TTATTGTTTTAGTCCTTTTAGTTTCT-TTT
1 TTACTATTTTAGTCCTTTAAATTTCTGTTT
* * * * *
91368 TTACT-GTTCA-ACCATTTAAAATTATGTTT
1 TTACTATTTTAGTCC-TTTAAATTTCTGTTT
*
91397 TT-CTATTTTAGTCCTTTAACTTTCTGTTT
1 TTACTATTTTAGTCCTTTAAATTTCTGTTT
* * *
91426 TTATTATTTTAGTCATTTAAATTTCCGTTT
1 TTACTATTTTAGTCCTTTAAATTTCTGTTT
** * * *
91456 TTGTTGTTTTAGTCCTGTAAATTTCTGTTA
1 TTACTATTTTAGTCCTTTAAATTTCTGTTT
91486 TTACTATTT
1 TTACTATTT
91495 AGTATCTTAT
Statistics
Matches: 139, Mismatches: 37, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
27 2 0.01
28 17 0.12
29 43 0.31
30 77 0.55
ACGTcount: A:0.20, C:0.12, G:0.09, T:0.59
Consensus pattern (30 bp):
TTACTATTTTAGTCCTTTAAATTTCTGTTT
Found at i:91792 original size:5 final size:5
Alignment explanation
Indices: 91782--91817 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
91772 TTCTTTTCAT
* *
91782 TTTTA TTTTA TTTTG TTTTA TTTTA TTTCA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
91818 CTTTGCGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:91815 original size:15 final size:15
Alignment explanation
Indices: 91776--91817 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
91766 TTTTACTTCT
91776 TTTCATTTTTATTTTA
1 TTTCA-TTTTATTTTA
**
91792 TTTTGTTTTATTTTA
1 TTTCATTTTATTTTA
91807 TTTCATTTTAT
1 TTTCATTTTAT
91818 CTTTGCGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 19 0.86
16 3 0.14
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTCATTTTATTTTA
Found at i:94647 original size:15 final size:15
Alignment explanation
Indices: 94627--94655 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94617 GACGCCAGCA
94627 AGAAGAAGGCTGCTC
1 AGAAGAAGGCTGCTC
94642 AGAAGAAGGCTGCT
1 AGAAGAAGGCTGCT
94656 GCGGCTGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14
Consensus pattern (15 bp):
AGAAGAAGGCTGCTC
Found at i:97215 original size:27 final size:27
Alignment explanation
Indices: 97175--97226 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
97165 ATCTGATTGA
*
97175 AACAAGCATTAAGTAAGCATAACCTCC
1 AACAAGCATCAAGTAAGCATAACCTCC
*
97202 AACAAGCATCAAGTAAGCGTAACCT
1 AACAAGCATCAAGTAAGCATAACCT
97227 AACTTATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.25, G:0.13, T:0.17
Consensus pattern (27 bp):
AACAAGCATCAAGTAAGCATAACCTCC
Found at i:98715 original size:2 final size:2
Alignment explanation
Indices: 98708--98741 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
98698 TGTGGTGGGT
98708 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
98742 AACCTGAGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:99650 original size:10 final size:10
Alignment explanation
Indices: 99621--99689 Score: 72
Period size: 10 Copynumber: 7.1 Consensus size: 10
99611 GCTGTTGGAA
99621 AACCGGTTTG
1 AACCGGTTTG
*
99631 -ACCAGTTTTG
1 AACC-GGTTTG
99641 AACCGGTTTG
1 AACCGGTTTG
*
99651 -ACCGGTTCG
1 AACCGGTTTG
99660 AACCGGTTTG
1 AACCGGTTTG
*
99670 -ACCGGTCTG
1 AACCGGTTTG
*
99679 AACCGGGTTG
1 AACCGGTTTG
99689 A
1 A
99690 CCCGACCCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
9 19 0.40
10 26 0.54
11 3 0.06
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (10 bp):
AACCGGTTTG
Found at i:99664 original size:19 final size:19
Alignment explanation
Indices: 99621--99691 Score: 90
Period size: 19 Copynumber: 3.7 Consensus size: 19
99611 GCTGTTGGAA
* *
99621 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTTCG
99641 AACCGGTTTGACCGGTTCG
1 AACCGGTTTGACCGGTTCG
99660 AACCGGTTTGACCGG-TCTG
1 AACCGGTTTGACCGGTTC-G
*
99679 AACCGGGTTGACC
1 AACCGGTTTGACC
99692 CGACCCGACT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
18 2 0.04
19 32 0.68
20 13 0.28
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (19 bp):
AACCGGTTTGACCGGTTCG
Found at i:99707 original size:17 final size:17
Alignment explanation
Indices: 99685--99725 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
99675 TCTGAACCGG
*
99685 GTTGACCCGACCCGACT
1 GTTGACCCGACCCGACC
99702 GTTGACCCGACCCGACC
1 GTTGACCCGACCCGACC
99719 GTTGACC
1 GTTGACC
99726 GTTGACCGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.17, C:0.41, G:0.24, T:0.17
Consensus pattern (17 bp):
GTTGACCCGACCCGACC
Found at i:99739 original size:6 final size:7
Alignment explanation
Indices: 99715--99744 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
99705 GACCCGACCC
99715 GACCGTT
1 GACCGTT
99722 GACCGTT
1 GACCGTT
99729 GACCG-T
1 GACCGTT
99735 GACCGTT
1 GACCGTT
99742 GAC
1 GAC
99745 TTTCTTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (7 bp):
GACCGTT
Found at i:99739 original size:13 final size:14
Alignment explanation
Indices: 99715--99744 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
99705 GACCCGACCC
99715 GACCGTTGACCGTT
1 GACCGTTGACCGTT
99729 GACCG-TGACCGTT
1 GACCGTTGACCGTT
99742 GAC
1 GAC
99745 TTTCTTTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (14 bp):
GACCGTTGACCGTT
Found at i:101152 original size:17 final size:17
Alignment explanation
Indices: 101114--101152 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
101104 GATAGTATAA
*
101114 TTTATTTATAATTTCAT
1 TTTATTTATAATGTCAT
* *
101131 GTTATTTATAATGTGAT
1 TTTATTTATAATGTCAT
101148 TTTAT
1 TTTAT
101153 ATTGATGGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (17 bp):
TTTATTTATAATGTCAT
Done.