genome.fa.s6540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006540.1 Hibiscus syriacus cultivar Beakdansim tig00015967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68519

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2227--2253	2	13.5	2	100	0	54	51	0	0	48	1.00
4308--4382	18	4.2	18	82	3	80	24	45	18	12	1.83
4305--4379	36	2.1	35	85	2	96	24	46	17	12	1.81
4330--4378	17	2.8	17	90	3	71	24	44	18	12	1.84
4380--4411	14	2.2	15	94	5	57	15	25	28	31	1.96
6388--6445	25	2.4	25	91	2	91	20	15	15	48	1.81
6388--6485	24	4.0	25	81	5	101	23	11	17	47	1.79
6463--6489	14	1.9	14	100	0	54	37	3	14	44	1.63
8431--8472	20	2.1	19	83	16	50	16	14	9	59	1.60
10727--10764	12	3.2	12	82	10	51	50	2	0	47	1.15
10722--10779	24	2.5	24	77	8	66	46	1	0	51	1.11
18103--18138	17	2.1	17	100	0	72	27	0	25	47	1.52
19005--19037	17	2.0	17	88	5	50	51	0	21	27	1.48
21241--21382	20	7.1	20	79	6	117	39	23	11	26	1.88
21333--21399	21	3.3	20	74	15	66	37	14	13	34	1.86
21949--21978	16	1.9	16	93	6	53	73	0	6	20	1.05
22224--22270	21	2.2	21	84	0	58	34	10	12	42	1.78
22274--22328	20	2.8	20	75	5	58	34	9	21	34	1.85
22464--22498	17	2.1	17	88	0	52	42	0	0	57	0.99
22463--22501	9	4.4	9	83	6	53	46	0	0	53	1.00
22838--22864	13	2.1	13	100	0	54	55	37	0	7	1.28
25575--25618	13	3.4	13	81	9	54	22	0	2	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25588--25633	20	2.2	21	84	7	58	26	0	6	67	1.15
26115--26562	228	2.0	227	94	1	790	45	8	7	39	1.62
26793--26839	20	2.4	19	82	10	67	53	10	17	19	1.72
26802--26844	20	2.3	19	88	11	63	51	11	16	20	1.75
29073--29137	21	3.1	21	80	6	69	40	15	29	15	1.88
29171--29236	33	2.0	33	90	0	105	28	0	48	22	1.51
30774--30810	18	2.1	18	89	0	56	32	5	10	51	1.60
30766--30812	24	2.0	24	86	0	67	34	4	14	46	1.64
31069--31155	39	2.2	39	95	0	156	48	20	13	17	1.81
31560--31632	23	3.2	23	88	0	101	34	4	21	39	1.73
31675--32676	334	3.0	334	98	0	1952	42	8	11	38	1.70
32800--32842	16	2.7	15	85	7	50	23	23	16	37	1.94
34005--34038	12	2.7	13	81	9	52	55	0	2	41	1.15
34264--34319	23	2.3	23	84	6	67	48	0	1	50	1.11
49978--50036	19	3.1	19	76	13	59	71	0	5	23	1.06
49978--50027	19	2.5	20	84	12	68	72	0	6	22	1.07
50072--50113	17	2.4	18	92	4	68	71	0	2	26	0.98
50722--50833	24	4.5	25	68	14	79	57	12	0	30	1.36
50698--50925	75	3.1	73	79	12	225	56	12	0	30	1.43
52896--53116	59	3.8	59	79	7	218	29	22	9	38	1.87
52896--53116	118	1.9	117	84	2	300	29	22	9	38	1.87
55606--55668	29	2.2	29	91	0	99	23	22	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55664--55693	15	2.0	15	93	0	51	6	16	13	63	1.50
55712--55751	14	2.8	14	92	3	62	77	0	2	20	0.88
55712--55751	5	8.2	5	88	5	64	77	0	2	20	0.88
55761--55799	10	3.8	10	83	6	51	76	5	7	10	1.13
55759--55799	21	2.0	21	95	0	73	78	4	7	9	1.10
66473--66705	75	2.9	82	79	13	268	56	12	1	30	1.43
66657--66704	25	2.0	24	83	4	60	62	12	2	22	1.40
66559--66723	75	2.3	72	83	5	190	56	12	1	30	1.43

Tables:   1

The End!