Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006543.1 Hibiscus syriacus cultivar Beakdansim tig00015973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104758

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2159--2245
33
2.7
33
89
5
133
44
14
6
33
1.72
2310--2360
21
2.3
21
83
10
57
31
17
19
31
1.95
3452--3525
20
3.7
20
83
3
94
31
24
24
20
1.98
3443--3506
21
3.1
21
80
8
78
26
28
23
21
1.99
3443--3525
41
2.0
41
88
4
123
28
26
24
20
1.99
3546--3624
21
3.8
20
86
11
97
22
17
36
22
1.95
3704--3761
30
2.0
29
86
10
82
46
13
5
34
1.66
3704--3763
29
2.0
30
90
6
95
45
13
6
35
1.70
6204--6236
16
2.1
16
100
0
66
57
24
12
6
1.57
6313--6338
10
2.6
10
100
0
52
57
19
11
11
1.63
8358--8402
20
2.5
18
80
19
58
26
22
11
40
1.87
9257--9296
21
1.9
21
89
0
62
55
2
5
37
1.35
22873--22914
22
2.0
21
85
4
57
69
2
14
14
1.30
23705--23749
22
2.0
22
100
0
90
31
37
0
31
1.58
27234--27324
30
3.1
30
68
9
96
42
12
10
34
1.77
43666--43713
21
2.3
21
77
0
51
20
20
29
29
1.98
44430--44463
17
2.0
17
88
0
50
64
0
2
32
1.08
46650--46689
14
3.1
13
82
10
55
60
0
0
40
0.97
48041--48121
3
27.0
3
92
0
135
62
0
0
37
0.95
48394--48434
16
2.5
17
76
11
50
19
26
7
46
1.76
48410--48467
19
3.1
19
69
18
57
20
22
10
46
1.81
48375--48467
38
2.5
36
86
6
116
21
21
9
47
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48408--49065
113
5.9
113
85
3
866
28
18
14
37
1.91
48408--49062
222
2.9
226
85
3
914
28
18
14
37
1.91
49896--50542
82
7.9
82
93
1
1037
38
22
12
26
1.89
49896--50542
247
2.6
247
92
0
1075
38
22
12
26
1.89
51676--51724
10
4.6
10
76
14
53
0
16
0
83
0.64
51677--51724
7
7.0
7
83
7
55
0
16
0
83
0.65
62317--62403
28
3.1
27
72
18
72
62
3
6
27
1.37
63064--63103
14
3.1
13
82
10
55
60
0
0
40
0.97
63077--63124
17
2.8
17
96
3
87
52
0
0
47
1.00
64328--64369
16
2.6
16
100
0
84
16
19
57
7
1.62
64474--64563
9
9.1
11
80
20
78
60
0
0
40
0.97
64486--64563
3
26.0
3
92
0
129
62
0
0
37
0.95
65027--65081
28
2.0
28
96
0
101
47
18
7
27
1.74
65961--66104
24
6.0
24
65
20
68
47
2
1
48
1.22
66124--66159
2
18.0
2
100
0
72
50
0
0
50
1.00
70648--70691
12
3.8
12
84
6
54
54
9
11
25
1.65
71777--71815
15
2.6
14
80
11
51
2
15
5
76
1.06
77251--77284
3
11.3
3
93
0
59
0
29
0
70
0.87
82212--82275
2
32.0
2
100
0
128
50
0
0
50
1.00
93296--93432
17
7.9
17
83
7
159
32
9
13
44
1.75
93300--93432
35
3.8
35
86
2
187
33
9
13
43
1.77
93297--93432
52
2.6
51
79
6
157
33
9
13
44
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98793--98872
23
3.6
22
72
13
65
27
23
22
26
2.00
98774--98869
44
2.2
43
83
5
113
29
22
20
27
1.99
99247--99276
10
3.0
10
95
0
51
40
3
6
50
1.45
99291--99315
13
1.9
13
100
0
50
24
0
12
64
1.27
100831--100855
2
12.5
2
100
0
50
52
0
0
48
1.00
102457--102515
31
1.9
31
89
0
91
42
6
8
42
1.61
102610--102801
31
6.8
32
74
23
189
53
13
0
33
1.40
102538--102911
53
7.3
52
72
21
292
52
13
0
33
1.41
102540--102630
22
4.0
22
80
10
119
51
16
0
31
1.45
102643--102691
22
2.2
22
85
3
62
57
14
0
28
1.38
102614--102911
84
3.5
84
82
14
360
52
13
0
33
1.41
102727--102775
21
2.3
21
75
13
55
53
14
0
32
1.41
102809--102948
22
6.3
22
74
8
140
51
10
0
37
1.37
102891--102926
14
2.5
15
95
4
65
61
0
0
38
0.96
104364--104405
21
2.0
21
90
9
68
57
7
4
30
1.47

Tables:   1

The End!