Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006544.1 Hibiscus syriacus cultivar Beakdansim tig00015974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51916

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4340--4476
17
7.9
17
83
7
159
32
9
13
44
1.75
4344--4476
35
3.8
35
86
2
187
33
9
13
43
1.77
4341--4476
52
2.6
51
79
6
157
33
9
13
44
1.76
9810--9889
23
3.6
22
72
13
65
27
23
22
26
2.00
9793--9891
44
2.3
41
80
11
110
28
24
21
26
1.99
10265--10294
10
3.0
10
95
0
51
40
3
6
50
1.45
11858--11887
2
15.0
2
100
0
60
50
0
0
50
1.00
13507--13565
31
1.9
31
89
0
91
42
6
8
42
1.61
13590--13680
22
4.0
22
80
10
119
51
16
0
31
1.45
13660--13855
32
6.8
32
76
21
225
54
13
0
32
1.39
13581--13967
54
7.4
53
74
19
339
53
13
0
33
1.40
13692--13734
22
2.0
22
100
0
86
51
13
0
34
1.42
13660--13900
86
2.9
85
91
4
393
53
14
0
32
1.41
13779--13828
22
2.2
22
85
3
73
56
14
0
30
1.39
13863--14004
22
6.3
22
78
4
158
52
10
0
37
1.36
13947--13982
14
2.5
15
95
4
65
61
0
0
38
0.96
15447--15485
21
1.9
21
89
5
62
56
7
5
30
1.49
19272--19347
23
3.4
23
76
7
75
23
27
22
26
1.99
21327--21406
2
40.0
2
100
0
160
50
0
0
50
1.00
22080--22133
19
2.8
19
91
0
90
24
29
22
24
1.99
22353--22385
14
2.4
14
94
0
57
51
6
30
12
1.63
28227--28256
15
1.9
16
93
6
53
13
6
6
73
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35940--36006
28
2.5
27
88
7
100
19
28
5
46
1.73
42103--42157
21
2.6
21
78
15
60
41
1
0
56
1.10
42360--42415
24
2.3
24
87
0
76
10
39
10
39
1.75

Tables:   1

The End!