genome.fa.s6545.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006545.1 Hibiscus syriacus cultivar Beakdansim tig00015976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106273

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725--787	2	31.5	2	96	0	117	49	1	0	49	1.10
2131--2317	62	3.0	63	82	8	195	29	17	12	40	1.87
2230--2318	29	2.9	30	76	16	94	31	19	14	34	1.92
2260--2365	33	3.2	33	79	10	142	31	17	15	35	1.91
2249--2415	68	2.6	66	89	7	247	34	19	11	34	1.89
2247--2413	33	5.3	31	74	22	118	34	19	12	33	1.90
2665--2732	20	3.3	20	67	15	57	25	33	22	19	1.97
2483--2823	130	2.6	127	78	11	361	24	32	19	23	1.97
5262--5319	24	2.4	24	82	0	80	51	18	17	12	1.75
7069--7204	71	1.9	71	86	0	191	22	16	15	44	1.85
7760--8338	189	3.0	194	80	8	579	36	6	10	46	1.62
8400--8440	21	2.0	21	90	0	64	43	4	9	41	1.59
9613--9672	13	4.2	13	75	19	57	18	46	20	15	1.84
9613--9672	31	1.9	31	93	0	102	18	46	20	15	1.84
9626--9666	18	2.3	18	95	0	73	19	48	21	9	1.77
12153--12193	17	2.4	17	91	0	64	14	14	19	51	1.77
12136--12175	12	3.3	12	78	0	53	15	17	20	47	1.83
12116--12180	24	2.8	23	81	9	69	18	18	16	46	1.85
13572--13613	3	14.0	3	100	0	84	66	0	0	33	0.92
13878--14026	75	2.0	75	85	2	201	42	15	11	30	1.82
13996--14047	21	2.3	23	80	9	63	25	19	21	34	1.96
15125--15248	31	4.0	31	98	0	239	35	16	12	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21730--21815	30	2.8	30	85	3	109	43	6	10	39	1.66
22232--22280	20	2.4	21	89	3	73	40	22	16	20	1.91
22287--22385	20	4.9	20	90	3	128	35	20	10	34	1.86
23337--23386	24	2.1	24	88	0	73	24	20	18	38	1.93
26062--26108	20	2.3	20	75	13	51	23	14	19	42	1.88
26159--26315	64	2.5	64	92	2	262	50	16	2	29	1.58
27684--27841	21	7.5	21	87	2	210	22	17	39	20	1.93
27684--27841	42	3.8	42	94	0	262	22	17	39	20	1.93
28138--28277	63	2.2	62	81	7	158	31	34	12	21	1.91
28161--28292	63	2.1	63	80	2	140	28	37	11	21	1.88
29955--30008	20	2.8	20	80	2	65	46	18	16	18	1.85
30004--30046	20	2.2	20	82	0	50	13	16	20	48	1.80
30568--30612	20	2.3	19	80	3	54	26	15	20	37	1.92
30610--30667	20	2.9	20	76	7	64	22	12	31	34	1.91
32997--33211	98	2.2	99	91	2	344	38	11	13	36	1.81
35003--35056	20	2.8	20	80	2	65	46	18	16	18	1.85
35052--35094	20	2.2	20	82	0	50	13	16	20	48	1.80
35416--35466	22	2.3	22	93	0	84	27	13	37	21	1.91
38055--38269	98	2.2	99	91	2	344	38	11	13	36	1.81
40062--40115	20	2.8	20	80	2	65	46	18	16	18	1.85
40111--40153	20	2.2	20	82	0	50	13	16	20	48	1.80
40475--40525	22	2.3	22	89	0	75	25	13	39	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40683--40727	20	2.3	19	80	3	54	26	15	20	37	1.92
43110--43325	98	2.2	99	90	3	337	38	11	13	36	1.81
51624--51653	2	15.0	2	100	0	60	50	0	0	50	1.00
53714--53815	51	2.0	51	100	0	204	43	11	7	37	1.71
57837--57878	22	1.9	22	90	9	68	14	11	4	69	1.34
59896--59934	18	2.1	18	85	4	51	12	7	0	79	0.93
60190--60214	2	12.5	2	100	0	50	48	0	0	52	1.00
63115--63190	36	2.1	36	97	0	143	43	14	10	31	1.79
89111--89146	3	12.0	3	100	0	72	33	0	0	66	0.92

Tables:   1

The End!