genome.fa.s6548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006548.1 Hibiscus syriacus cultivar Beakdansim tig00015992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107771

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10549--10599	21	2.4	22	83	9	70	76	3	15	3	1.08
10567--10618	26	2.0	25	85	10	70	71	3	17	7	1.25
13100--13149	19	2.5	20	90	3	75	44	6	14	36	1.69
14044--14105	30	2.0	31	87	3	90	54	9	8	27	1.61
19262--19321	30	2.0	31	86	3	86	53	10	8	28	1.63
40498--40549	19	2.6	21	90	6	81	46	5	13	34	1.67
41457--41516	30	2.0	31	83	3	77	55	10	8	26	1.61
44948--45048	33	3.0	33	80	11	82	32	1	33	31	1.69
48766--48840	38	2.0	37	82	7	89	62	0	22	14	1.31
49028--49063	17	2.1	17	89	0	54	0	11	5	83	0.80
49408--49508	33	3.0	33	80	11	82	32	1	33	31	1.69
50884--50935	19	2.6	21	90	6	81	46	5	13	34	1.67
51844--51903	30	2.0	31	83	3	77	55	10	8	26	1.61
52785--52814	13	2.4	13	94	5	53	43	0	30	26	1.55
54650--54729	35	2.2	37	91	4	128	31	37	3	27	1.74
56491--56672	90	2.0	91	89	1	276	20	27	24	27	1.99
57340--57447	43	2.3	46	81	16	116	53	13	0	31	1.46
61175--61216	19	2.2	19	91	0	66	0	7	14	78	0.95
62074--62119	22	2.0	22	83	12	56	52	13	0	34	1.40
68647--68689	23	1.9	21	81	13	50	34	13	18	32	1.90
72473--72515	14	3.1	14	86	3	52	27	39	0	32	1.57
75862--75921	30	2.0	31	83	3	77	26	8	10	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76831--76881	21	2.5	21	90	6	79	35	11	5	47	1.65
86586--86635	14	3.9	13	73	21	52	78	2	20	0	0.86
86580--86635	19	3.1	18	82	17	71	78	1	19	0	0.84
86580--86635	11	4.7	11	74	21	51	78	1	19	0	0.84
94445--94474	5	6.2	5	96	3	53	0	20	0	80	0.72
94444--94481	15	2.5	15	80	20	51	0	21	0	78	0.74
103504--103558	24	2.3	25	81	6	60	29	21	16	32	1.95

Tables:   1

The End!