genome.fa.s655.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000655.1 Hibiscus syriacus cultivar Beakdansim tig00001267_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161880

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299--1397	33	3.0	33	100	0	198	24	18	27	30	1.98
1458--1496	20	2.0	20	84	0	51	17	5	20	56	1.60
1916--1962	12	4.0	12	75	5	51	27	14	23	34	1.94
2037--2099	22	2.8	23	82	2	83	23	23	12	39	1.89
3671--3719	21	2.3	20	80	10	53	63	0	0	36	0.95
3682--3731	3	17.7	3	80	12	52	66	0	0	34	0.92
12664--12776	60	1.9	60	85	3	156	37	18	12	31	1.88
12662--12788	60	2.1	60	79	2	139	38	19	11	30	1.87
22303--22412	23	4.9	23	79	10	122	29	26	22	21	1.99
22397--22453	21	2.7	21	79	15	64	31	29	17	21	1.96
22964--23163	55	3.6	55	91	2	296	30	20	19	29	1.97
25153--25311	64	2.5	64	85	4	196	33	20	18	27	1.96
26171--26235	31	2.1	31	85	5	87	21	20	23	35	1.96
26221--26319	30	3.3	30	92	1	155	21	22	26	30	1.99
31778--31915	22	6.3	22	73	12	88	31	25	19	23	1.98
31788--31891	22	4.7	22	80	7	104	32	25	20	21	1.97
31788--31934	21	6.8	22	79	3	111	31	26	20	21	1.98
32443--32640	55	3.6	55	81	0	243	30	18	19	31	1.96
40119--40158	14	2.9	14	85	3	55	2	7	27	62	1.35
40493--40557	30	2.2	30	83	8	80	58	13	12	15	1.64
44944--45175	113	2.1	113	100	0	464	29	22	21	25	1.99
46145--46182	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50926--50992	22	2.8	24	82	15	84	25	29	10	34	1.89
55779--55853	21	3.6	21	94	0	132	28	16	26	29	1.96
55865--55936	22	3.4	21	71	11	67	19	19	25	36	1.95
55886--55954	19	3.5	19	77	11	75	20	20	21	37	1.94
55845--55954	41	2.7	41	88	4	159	18	20	23	37	1.94
55958--56214	20	12.9	20	70	16	135	16	21	23	38	1.93
55842--56230	136	2.9	135	92	3	631	18	21	23	37	1.94
56001--56072	22	3.4	22	71	11	78	18	22	25	34	1.96
56022--56090	19	3.5	19	73	11	66	18	23	21	36	1.95
56001--56090	41	2.2	41	95	0	162	18	22	23	35	1.96
56469--56502	5	6.4	5	96	3	50	0	20	52	26	1.46
56572--56628	22	2.6	22	100	0	114	36	28	17	17	1.93
56659--56776	20	5.8	20	74	4	119	38	22	21	16	1.93
56656--56772	41	2.9	41	97	0	225	38	23	20	17	1.93
56679--56752	21	3.6	21	74	3	87	35	25	18	20	1.96
59193--59610	191	2.2	189	87	1	577	33	15	17	33	1.92
59716--59791	13	6.0	13	81	6	102	10	44	9	35	1.71
59719--59795	25	3.1	25	92	0	127	10	46	10	32	1.72
65733--65900	44	3.8	44	83	0	201	30	24	16	27	1.97
66358--66402	14	3.1	14	84	12	56	62	2	0	35	1.08
72548--72599	27	1.9	27	92	0	86	30	15	21	32	1.94
74394--74427	3	11.3	3	100	0	68	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75406--75442	18	2.1	18	90	5	58	43	5	0	51	1.24
79289--79383	43	2.2	43	92	0	154	40	34	9	15	1.80
79499--79617	24	5.0	24	83	4	141	38	18	15	26	1.91
79541--79635	48	2.0	48	81	4	111	42	16	15	25	1.88
84611--84705	43	2.2	43	94	0	163	37	36	8	16	1.79
84821--84939	24	5.0	24	87	4	159	37	21	15	26	1.92
84855--84957	48	2.1	48	82	3	118	40	20	13	25	1.89
84821--84957	72	1.9	72	84	3	186	39	20	14	25	1.91
90390--90448	23	2.6	23	83	0	82	32	28	22	16	1.96
90966--91000	14	2.6	14	86	4	54	42	5	5	45	1.51
94190--94251	14	4.7	14	75	15	69	41	0	19	38	1.51
94201--94257	19	3.0	19	72	10	62	43	0	17	38	1.49
94185--94257	24	3.2	24	83	12	91	41	0	20	38	1.53
98482--98528	17	2.4	19	76	23	53	29	14	27	27	1.96
98961--98993	17	2.0	17	88	5	50	24	9	21	45	1.80
99163--99194	2	16.0	2	100	0	64	50	0	0	50	1.00
99913--99959	22	2.1	22	92	0	76	48	0	17	34	1.47
109044--109211	53	3.2	52	62	14	121	22	19	18	39	1.92
108969--109291	103	3.2	103	91	3	494	24	16	17	41	1.90
113051--113110	22	2.9	20	79	18	68	41	15	15	28	1.86
120031--120119	23	4.0	22	83	9	101	24	28	24	22	2.00
125242--125279	17	2.2	17	100	0	76	42	0	26	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125615--125718	19	5.2	19	72	15	93	35	14	4	45	1.66
125595--125752	62	2.6	62	94	1	282	38	12	3	44	1.61
129316--129351	17	2.1	17	89	0	54	38	8	0	52	1.32
134622--134680	30	2.0	29	83	3	73	35	8	22	33	1.84
134913--134978	23	2.9	23	81	0	78	19	24	22	33	1.97
137455--137489	15	2.3	15	95	0	61	42	0	2	54	1.15
138001--138077	20	3.8	20	73	13	75	35	12	20	31	1.91
140193--140270	30	2.6	30	97	0	147	28	19	20	32	1.97
145113--145152	20	2.0	20	95	0	71	32	20	27	20	1.97
145277--145431	50	3.0	50	64	18	120	41	15	16	26	1.87
145094--145440	103	3.4	102	89	2	507	40	16	17	24	1.90
147468--147509	19	2.2	19	91	0	66	35	19	7	38	1.79
148063--148545	103	4.7	103	85	3	580	41	16	16	25	1.89

Tables:   1

The End!