genome.fa.s6551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006551.1 Hibiscus syriacus cultivar Beakdansim tig00016008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70535

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379--537	64	2.5	65	84	6	200	30	24	19	25	1.98
1616--1650	9	3.8	9	88	7	52	0	20	0	80	0.72
20538--20589	20	2.6	20	93	0	86	25	28	21	25	1.99
21145--21184	19	2.1	19	85	0	53	52	27	15	5	1.63
21180--21272	19	5.1	19	76	15	79	13	23	18	44	1.86
21185--21247	33	1.9	33	90	0	99	12	23	20	42	1.86
22570--22631	32	1.9	33	93	3	108	9	19	22	48	1.78
22628--22673	20	2.3	20	88	0	65	17	19	23	39	1.92
23155--23199	18	2.5	18	88	0	72	13	15	44	26	1.83
24519--24575	20	2.8	20	86	0	69	43	21	17	17	1.88
24841--24883	22	2.0	22	95	0	77	18	16	44	20	1.87
25071--25143	20	3.7	20	94	0	128	26	17	28	27	1.98
25051--25185	20	6.7	19	81	7	108	24	17	25	33	1.96
25174--25266	20	4.5	21	75	4	91	17	23	18	40	1.90
25073--25247	41	4.3	41	81	3	133	21	20	23	35	1.96
25174--25266	41	2.3	41	96	0	177	17	23	18	40	1.90
26384--26453	30	2.3	29	87	2	86	34	15	27	22	1.95
26393--26453	30	2.0	30	93	0	104	36	16	24	22	1.94
26560--26616	24	2.3	26	77	20	68	56	0	0	43	0.99
26578--26617	19	2.1	19	85	0	53	55	0	0	45	0.99
26632--26667	11	3.2	11	92	4	54	33	50	8	8	1.63
27329--27363	16	2.2	16	100	0	70	42	0	34	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28312--28449	21	6.7	21	69	6	59	34	25	18	21	1.96
28417--28785	20	18.5	20	85	4	458	34	26	18	20	1.96
29468--29514	24	2.0	24	87	8	69	25	14	21	38	1.92
29689--29713	12	2.1	12	100	0	50	72	0	28	0	0.86
31995--32301	19	17.4	19	80	16	376	46	18	20	14	1.83
32023--32301	52	5.2	52	93	4	388	46	17	21	14	1.83
32062--32301	71	3.4	71	86	11	373	47	17	20	14	1.83
31995--32339	142	2.5	138	90	6	518	46	18	20	14	1.84
31995--32323	52	6.3	55	88	9	332	46	18	20	14	1.84
32330--32412	20	4.6	19	81	15	113	14	24	18	43	1.87
32519--32555	14	2.6	14	91	0	65	45	21	0	32	1.52
34535--34591	14	3.7	14	77	20	60	45	22	21	10	1.82
34516--34608	33	2.8	33	93	0	159	47	21	19	11	1.81
34479--34613	19	7.6	19	76	16	119	45	23	18	11	1.82
34609--34737	19	7.3	19	75	17	125	8	17	28	45	1.77
34609--34700	33	2.8	33	93	3	150	7	18	28	45	1.76
34781--35344	93	6.1	93	99	0	1105	46	18	12	22	1.83
34781--35344	185	3.0	186	98	0	1105	46	18	12	22	1.83
37047--37136	14	5.7	14	74	23	81	42	23	25	8	1.83
37039--37153	33	3.5	33	95	0	212	45	20	24	9	1.81
37046--37158	19	6.8	18	72	23	88	43	22	24	9	1.83
37170--37224	14	3.6	14	73	21	56	9	25	23	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37154--37224	33	2.2	33	94	0	124	8	22	25	43	1.81
37165--37246	33	2.5	33	89	2	119	9	25	21	42	1.84
37177--37265	20	4.8	20	72	19	75	12	24	19	43	1.85
37345--37415	33	2.2	33	92	0	115	47	18	22	11	1.80
37597--37651	22	2.5	22	81	0	74	20	16	40	23	1.91
37797--37989	20	9.6	20	82	5	219	19	19	25	35	1.95
37797--37989	60	3.2	60	83	0	251	19	19	25	35	1.95
38045--38096	20	2.6	20	96	0	95	21	13	26	38	1.90
41670--41701	2	16.5	2	93	6	57	50	0	0	50	1.00
47385--47430	24	2.0	23	83	8	58	63	0	6	30	1.20
47774--47809	17	2.0	19	89	10	58	50	0	0	50	1.00
67018--67087	35	2.0	35	97	0	131	41	2	7	48	1.45

Tables:   1

The End!