Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006552.1 Hibiscus syriacus cultivar Beakdansim tig00016014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92463

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1391--1494
48
2.1
50
96
3
194
34
13
14
37
1.85
5297--5337
20
2.0
21
85
4
57
21
0
14
63
1.30
8834--8886
26
2.0
27
82
10
65
49
3
0
47
1.19
25501--25535
12
2.8
13
82
8
54
22
0
2
74
0.95
29027--29063
18
2.0
19
89
5
58
67
0
29
2
1.04
39076--39130
28
2.0
28
92
0
92
25
1
30
41
1.66
39076--39145
28
2.5
28
83
4
79
25
1
30
42
1.64
39141--39201
7
8.7
7
76
7
52
24
0
32
42
1.55
41208--41236
2
14.5
2
100
0
58
48
0
0
51
1.00
41818--41849
10
3.2
10
100
0
64
28
0
21
50
1.49
42105--42138
12
2.8
12
90
4
50
14
26
29
29
1.95
46985--47025
3
14.0
3
94
5
75
68
0
0
31
0.90
47379--47589
47
4.5
46
68
13
133
25
18
28
27
1.98
47238--47663
142
3.1
142
90
3
636
25
18
28
27
1.98
48619--48662
23
2.0
22
90
4
70
4
11
0
84
0.77
62052--62092
3
14.0
3
94
5
75
68
0
0
31
0.90
62930--63023
47
2.0
47
93
0
161
40
14
19
25
1.90
92162--92221
29
2.0
32
90
9
99
33
10
30
26
1.89

Tables:   1

The End!