genome.fa.s6554.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006554.1 Hibiscus syriacus cultivar Beakdansim tig00016023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206650

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8816--9414	301	2.0	301	93	1	1013	32	16	16	34	1.92
17237--17284	21	2.3	21	96	0	87	39	20	10	29	1.86
29803--29841	19	2.1	19	85	0	51	53	10	10	25	1.66
31864--31913	20	2.5	20	87	3	66	36	18	18	28	1.94
33720--33869	44	3.4	44	90	3	248	16	12	26	44	1.83
63450--63479	15	2.0	15	100	0	60	13	46	26	13	1.80
64746--64808	32	2.0	32	83	0	81	19	31	25	23	1.98
64758--64845	31	2.8	31	81	5	97	19	31	23	25	1.98
70621--70653	16	2.1	16	94	0	57	9	12	21	57	1.62
71525--71619	49	1.9	50	86	2	138	33	11	15	38	1.84
74017--74051	17	2.1	17	89	10	54	25	0	0	74	0.82
74273--74310	19	2.0	19	89	0	58	34	5	2	57	1.35
85495--85619	60	2.1	60	87	0	178	28	16	18	37	1.92
85879--86159	85	3.3	84	78	9	264	50	7	18	23	1.72
85879--86159	44	6.5	42	75	9	194	50	7	18	23	1.72
85929--86178	42	5.9	42	76	10	170	52	6	16	24	1.67
86057--86124	21	3.2	21	65	19	52	54	2	16	26	1.56
86326--86485	60	2.7	60	82	5	198	38	14	15	31	1.87
87059--87145	31	2.8	30	82	8	84	27	27	27	17	1.97
87085--87180	31	3.0	31	81	4	111	27	29	28	15	1.96
88027--88098	20	3.6	20	76	10	76	26	25	20	27	1.99
92126--92229	32	3.3	31	77	10	111	27	27	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94043--94175	70	1.9	69	84	4	178	47	7	15	29	1.73
94207--94288	2	40.0	2	87	4	119	46	2	2	48	1.28
95332--95362	14	2.2	14	94	0	53	16	0	0	83	0.64
117931--118061	31	4.1	31	76	8	120	28	26	27	17	1.98
119858--119990	70	1.9	69	83	7	171	47	7	16	28	1.74
121237--121836	182	3.3	182	97	0	1128	26	17	13	42	1.87
121666--122180	162	3.1	162	87	7	717	27	16	12	43	1.84
121483--122180	344	2.0	344	95	0	1272	27	17	12	42	1.85
121827--122254	182	2.4	182	95	0	750	27	16	13	42	1.85
123615--124195	288	2.0	288	93	1	1004	25	23	18	33	1.97
127393--127474	29	2.8	29	94	1	137	32	14	9	42	1.79
132162--132243	29	2.8	29	94	1	137	32	14	9	42	1.79
134457--134564	44	2.4	45	96	3	202	14	13	28	42	1.85
139932--139992	21	3.2	21	63	26	53	45	16	6	31	1.73
139914--139993	36	2.2	36	91	2	126	43	18	6	31	1.75
142447--142500	15	3.7	15	97	2	101	48	0	11	40	1.39
143860--143930	33	2.2	33	97	0	133	14	33	21	30	1.92
148144--148203	13	4.5	13	74	12	50	80	8	11	0	0.92
148135--148202	26	2.5	27	77	11	77	82	7	10	0	0.85
148134--148212	27	2.9	26	77	9	70	78	7	12	1	1.01
149322--149357	18	2.0	18	88	0	54	19	8	30	41	1.81
149705--149788	37	2.3	37	83	2	107	33	21	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149735--149913	62	2.8	62	77	6	180	29	20	11	38	1.87
149943--150015	37	2.0	37	88	0	110	27	20	13	38	1.90
150045--150116	37	1.9	37	88	0	108	25	22	13	38	1.91
149863--150190	102	3.2	102	93	0	541	30	19	12	36	1.89
150105--150287	87	2.1	87	89	2	278	31	20	10	37	1.87
150336--150429	34	2.7	35	85	6	129	45	18	8	27	1.78
150336--150455	34	3.6	32	82	8	93	40	20	10	28	1.85
150411--150540	67	1.9	68	84	4	174	30	23	9	37	1.86
151253--151321	33	2.1	33	94	0	120	14	31	21	31	1.93
151253--151331	33	2.5	33	89	4	108	12	36	21	29	1.90
154376--154470	44	2.2	44	98	0	181	15	10	27	46	1.79
166553--166579	13	2.1	13	100	0	54	37	14	25	22	1.93
171046--171636	301	2.0	301	93	1	1015	32	16	16	34	1.91
176618--176757	73	1.9	73	94	2	246	39	15	9	35	1.80
177909--177962	25	2.1	26	96	3	101	40	3	11	44	1.58
180173--180217	20	2.2	20	84	0	54	33	4	8	53	1.52
189148--189178	2	15.5	2	93	0	53	48	0	3	48	1.17
193943--193989	20	2.3	20	78	7	51	48	4	0	46	1.21
194954--195002	17	3.2	17	68	31	56	18	6	12	63	1.48
194949--195018	28	2.5	28	93	6	115	21	7	11	60	1.55
194949--195031	28	2.9	28	89	5	96	21	6	13	59	1.56
195540--195583	20	2.1	22	83	8	56	36	27	0	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195859--195992	14	9.8	14	66	18	50	48	28	1	21	1.59
195859--195929	34	2.1	34	89	5	108	46	29	1	22	1.60
195862--195954	27	3.5	26	71	23	68	46	26	2	24	1.64
195959--195997	20	2.0	20	90	10	62	53	30	0	15	1.42
195952--196003	14	3.8	13	75	7	50	57	28	0	13	1.36
196600--196746	50	3.0	50	73	10	142	40	12	10	36	1.77
199233--199494	134	2.0	131	90	3	409	34	14	19	31	1.92
201129--201436	43	7.2	42	80	12	299	48	5	19	27	1.70
201155--201443	90	3.4	87	78	11	233	48	5	19	26	1.70
202127--202187	31	2.0	31	87	6	88	42	9	21	26	1.84
204618--204665	21	2.3	21	89	3	71	25	41	27	6	1.79

Tables:   1

The End!