Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006555.1 Hibiscus syriacus cultivar Beakdansim tig00016024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78314

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
541--582
21
2.0
22
85
4
59
57
7
0
35
1.26
653--701
23
2.0
26
88
11
77
4
28
0
67
1.09
664--710
20
2.1
23
81
14
55
6
25
0
68
1.13
1308--1334
2
13.5
2
100
0
54
48
0
0
51
1.00
2351--2384
18
1.9
17
88
5
50
50
0
0
50
1.00
2364--2489
28
4.4
28
73
19
91
53
0
3
42
1.19
2362--2465
28
3.5
31
78
16
105
52
0
4
42
1.22
2567--2616
27
1.9
25
88
8
73
68
2
4
26
1.18
2567--2633
27
2.6
27
79
13
70
68
2
2
25
1.18
12435--12630
97
2.0
99
97
2
378
40
10
5
44
1.60
19871--19963
48
1.9
48
100
0
186
33
10
22
33
1.89
20481--20536
24
2.3
24
84
3
76
67
5
0
26
1.11
25716--25785
35
1.9
38
88
8
110
47
21
10
21
1.80
37489--37561
23
3.2
23
63
18
62
20
4
27
47
1.68
37486--37578
45
2.1
45
100
0
186
20
6
23
49
1.72
39986--40036
19
2.6
20
90
3
77
43
23
17
15
1.88
39986--40303
20
15.6
20
78
7
147
38
19
22
19
1.93
40111--40301
40
4.7
40
83
6
240
36
17
24
21
1.94
40131--40290
83
1.9
83
87
0
230
36
17
25
21
1.95
40090--40303
103
2.1
103
89
0
320
36
17
24
21
1.95
40350--40392
5
7.8
6
92
7
58
30
51
18
0
1.47
41075--41107
5
6.6
5
96
0
57
0
21
54
24
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41251--41306
20
2.6
22
91
5
89
17
19
28
33
1.95
41270--41757
20
23.9
20
77
8
212
18
22
19
39
1.92
41339--41653
83
3.8
82
85
3
336
20
25
17
37
1.94
41347--41632
103
2.8
103
97
0
527
20
25
17
36
1.94
41337--41632
123
2.4
122
86
3
398
19
25
17
36
1.94
44603--44639
18
2.0
19
89
5
58
8
13
35
43
1.74
54207--54617
6
67.2
6
72
16
242
37
0
60
1
1.08
54187--54610
22
18.5
23
70
13
195
38
0
59
2
1.09
54207--54617
16
24.7
17
74
18
257
37
0
60
1
1.08
54684--54821
70
2.0
69
86
1
195
26
23
16
33
1.96
56131--56226
35
2.7
35
88
0
138
41
27
1
30
1.63
56387--56674
148
1.9
148
92
1
479
37
6
9
47
1.61
57169--57248
35
2.3
35
93
0
133
32
1
25
41
1.63
57920--57960
19
2.2
19
86
4
57
46
4
4
43
1.46
57975--58003
2
14.5
2
100
0
58
48
0
0
51
1.00
58601--58652
27
1.9
27
84
7
70
36
5
3
53
1.43
59544--59599
27
2.1
27
86
0
76
3
44
19
32
1.68
59768--59825
26
2.3
26
84
3
73
44
12
34
8
1.72
60323--60356
15
2.2
16
94
5
61
38
0
5
55
1.24
62393--62453
17
3.4
17
72
16
59
47
11
0
40
1.40
62862--62969
50
2.3
50
81
9
129
48
9
1
40
1.46
62947--62995
21
2.3
21
82
3
62
51
16
2
30
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75779--75839
31
2.0
31
96
0
113
32
9
11
45
1.73

Tables:   1

The End!