genome.fa.s6556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006556.1 Hibiscus syriacus cultivar Beakdansim tig00016028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157271

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3867--3907	3	13.7	3	89	0	55	4	36	26	31	1.78
4246--4285	18	2.2	18	90	0	62	20	22	30	27	1.98
5790--6114	111	3.0	111	88	5	497	45	10	6	37	1.65
6958--7025	29	2.3	29	79	13	86	42	1	5	50	1.35
6958--7032	31	2.5	31	85	8	104	42	1	5	50	1.33
7041--7105	31	2.2	31	83	10	91	36	9	7	46	1.65
8668--8777	29	3.8	29	95	2	195	17	20	16	45	1.85
9148--9304	64	2.5	63	78	10	167	26	19	20	33	1.96
14492--14516	6	4.2	6	100	0	50	20	16	64	0	1.30
14580--14623	13	3.5	13	90	6	72	18	52	15	13	1.75
14641--14726	32	2.7	33	81	5	113	51	0	0	48	1.00
14725--14779	24	2.3	24	90	0	83	25	47	14	12	1.80
14725--14779	12	4.6	12	81	0	65	25	47	14	12	1.80
16130--16239	29	3.8	29	92	2	177	17	21	17	43	1.88
16616--16772	64	2.5	64	75	10	151	27	16	19	36	1.93
18510--18548	18	2.3	17	91	8	62	48	0	0	51	1.00
24632--24689	29	2.0	29	86	6	82	34	24	8	32	1.86
25718--25778	13	4.7	13	85	0	77	36	16	1	45	1.57
34606--34727	60	2.0	60	91	0	199	32	17	18	31	1.94
34613--34744	60	2.2	60	84	2	176	32	17	16	33	1.93
34613--34760	60	2.5	60	83	5	165	31	16	18	33	1.94
35595--36949	6	230.2	6	90	9	2163	49	16	0	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36920--36976	15	3.5	16	76	13	55	40	10	1	47	1.48
37077--37109	2	16.0	2	93	6	57	48	3	0	48	1.17
40458--40489	15	2.0	17	88	11	50	28	25	12	34	1.92
51481--51556	40	1.9	40	94	0	134	38	10	9	42	1.71
51871--51960	39	2.3	38	83	7	110	41	14	11	33	1.81
57736--57786	22	2.3	22	80	12	59	31	15	7	45	1.75
71519--71631	60	1.9	60	83	7	149	38	15	1	45	1.56
71768--71851	44	1.9	44	83	9	109	29	7	16	46	1.74
72708--72755	23	2.2	21	75	13	51	12	33	8	45	1.72
72714--72792	23	3.4	23	85	5	97	15	29	12	43	1.83
72722--72789	23	2.9	23	89	6	102	11	29	13	45	1.79
73837--73862	13	2.0	13	100	0	52	46	15	15	23	1.83
74637--74690	21	2.6	21	96	0	99	25	16	27	29	1.97
74679--74866	20	9.6	20	72	18	130	15	22	23	38	1.92
74722--74793	22	3.4	22	73	11	87	18	19	25	37	1.94
74743--74811	19	3.5	19	73	11	75	18	20	21	39	1.93
74702--74964	41	6.6	41	77	13	246	18	19	23	39	1.93
74699--74927	116	2.0	116	86	5	320	17	19	24	37	1.93
74679--74972	157	1.9	156	90	0	471	18	19	22	39	1.93
74900--74964	19	3.3	19	75	12	76	20	16	18	44	1.87
74879--74950	22	3.5	20	75	11	65	19	15	25	40	1.90
75063--75106	6	7.5	6	97	2	81	31	52	15	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75607--75642	6	6.0	6	100	0	72	0	16	50	33	1.46
75738--75828	22	4.3	22	73	9	91	37	24	17	20	1.94
75819--76004	20	9.1	20	74	10	130	38	25	19	17	1.93
75836--75955	41	2.9	41	96	0	222	37	25	20	17	1.94
75795--76000	102	2.0	102	87	5	301	37	23	20	17	1.94
75886--76000	61	1.9	61	98	0	221	38	24	21	15	1.92
76724--76786	24	2.6	24	78	19	60	49	3	0	47	1.17
76758--76801	22	2.0	23	86	4	63	40	4	0	54	1.21
76752--76831	32	2.5	32	78	14	83	46	3	0	50	1.19
76884--76969	27	3.1	27	71	18	70	47	1	2	48	1.22
77121--77183	29	2.1	30	85	8	85	53	0	0	46	1.00
77350--77437	14	6.1	14	77	5	86	35	20	4	39	1.73
77273--77377	48	2.1	49	82	3	122	38	14	9	38	1.78
77348--77435	29	3.0	29	83	0	113	32	20	5	40	1.76
78453--78511	31	1.9	30	89	3	91	62	0	11	25	1.29
78900--79046	60	2.5	60	78	4	161	38	4	23	33	1.76
81182--81211	7	4.4	7	95	4	53	0	30	0	70	0.88
82134--82331	109	1.8	109	84	4	274	48	14	16	20	1.81
88606--88643	20	1.9	20	88	0	58	26	34	26	13	1.93
99894--99938	20	2.2	20	92	0	72	35	20	11	33	1.88
105359--105596	118	2.0	117	82	4	291	48	5	14	31	1.67
109457--109483	14	1.9	14	100	0	54	25	29	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109846--109880	18	1.9	18	88	11	54	54	20	2	22	1.58
111277--111378	37	2.8	37	84	0	141	39	15	14	30	1.88
111857--111897	2	21.0	2	90	5	66	46	0	0	53	1.00
112091--112126	18	1.9	19	88	5	56	30	5	0	63	1.17
112162--112235	2	36.5	2	92	8	123	48	2	0	48	1.15
112235--112301	24	2.8	23	81	6	71	16	8	0	74	1.05
113374--113410	19	1.9	19	89	10	58	8	24	0	67	1.17
116800--116857	16	3.7	15	77	13	64	75	8	15	0	1.02
117642--117762	22	5.5	22	92	0	197	38	26	13	22	1.91
118566--120258	106	16.0	106	91	1	2621	33	24	18	22	1.97
120990--121094	37	2.8	37	84	2	131	39	15	14	31	1.87
121950--122030	12	6.4	13	67	16	53	18	9	0	71	1.13
121965--122006	16	2.6	16	88	7	59	16	7	0	76	1.00
125218--125265	20	2.3	21	78	7	53	52	0	6	41	1.27
126312--126369	29	2.0	29	89	0	89	15	37	24	22	1.93
126412--126458	14	3.4	14	93	0	76	23	38	29	8	1.84
126529--126588	23	2.6	23	86	5	77	10	36	25	28	1.88
126596--126623	14	2.0	14	100	0	56	7	28	42	21	1.79
131031--131066	12	3.3	11	92	7	56	27	8	11	52	1.65
132533--133189	81	8.1	81	91	1	994	38	15	18	27	1.91
133792--133879	44	2.0	44	100	0	176	27	15	22	34	1.95
136018--136246	81	2.8	81	91	1	379	37	13	20	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136018--136333	162	2.0	161	80	9	367	37	15	20	27	1.92
138798--138898	40	2.5	40	100	0	202	24	13	28	32	1.94
139152--139252	40	2.5	40	100	0	202	24	13	28	32	1.94
138547--139608	354	3.0	354	99	0	2079	36	16	19	27	1.93
139508--139709	40	5.1	40	96	0	377	25	12	28	32	1.93
143273--143317	21	2.2	22	81	18	62	31	17	22	28	1.97
144306--144344	20	2.0	20	94	0	69	25	10	10	53	1.66
145133--145191	29	2.0	29	81	12	68	25	22	1	50	1.58
146060--146110	26	2.0	26	88	0	75	29	21	23	25	1.99
146325--146371	13	3.8	13	80	11	53	17	6	4	72	1.22
151633--151692	16	3.8	16	76	8	61	21	3	1	73	1.07
153554--153596	19	2.3	18	85	14	61	69	0	16	13	1.19
154395--154455	9	6.9	9	74	23	58	9	11	1	77	1.07
154397--154455	15	4.1	14	84	10	75	8	10	1	79	1.00
154413--154455	13	3.2	12	77	22	50	6	9	2	81	0.95

Tables:   1

The End!