genome.fa.s6557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006557.1 Hibiscus syriacus cultivar Beakdansim tig00016029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84179

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559--603	23	2.0	23	86	8	65	26	15	22	35	1.94
3075--3191	53	2.2	53	98	1	227	13	23	17	44	1.85
3094--3191	19	5.4	19	84	13	143	14	22	17	45	1.84
3268--3321	14	3.6	14	77	18	63	44	20	24	11	1.83
3249--3340	32	2.8	33	93	6	159	44	18	23	13	1.85
3249--3359	19	6.3	19	72	23	109	45	18	23	13	1.84
3400--3499	19	5.5	19	84	12	147	15	23	17	45	1.85
3383--3499	53	2.2	53	95	1	209	14	24	17	43	1.86
3606--3641	13	2.6	14	82	8	56	44	22	0	33	1.53
5612--5668	14	3.7	14	77	20	60	45	22	21	10	1.82
5593--5685	33	2.8	33	93	0	159	48	21	19	10	1.79
5556--5690	19	7.6	19	75	16	119	46	23	18	11	1.81
5686--5814	19	7.3	19	75	17	125	8	17	28	45	1.77
5686--5777	33	2.8	33	93	3	150	7	18	28	45	1.76
5858--6326	92	5.1	93	96	2	876	45	19	12	22	1.84
5858--6326	185	2.5	184	97	1	879	45	19	12	22	1.84
8028--8115	14	5.6	14	73	23	77	42	23	25	9	1.83
8020--8134	33	3.5	33	93	0	194	44	20	24	10	1.83
8042--8108	19	3.8	19	75	18	81	41	23	25	8	1.83
8075--8139	19	3.7	19	76	19	68	43	21	23	12	1.86
8151--8207	14	3.7	14	75	20	60	8	24	22	43	1.81
8135--8215	33	2.5	33	93	0	135	8	22	23	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8192--8267	21	3.7	21	85	3	109	11	25	18	44	1.83
8191--8268	41	1.9	41	94	0	138	12	25	17	43	1.85
8347--8417	33	2.2	33	89	0	106	47	16	23	11	1.79
8600--8654	22	2.5	22	81	0	74	20	16	40	23	1.91
8777--8858	40	2.1	40	81	6	96	23	15	23	37	1.93
8800--8992	20	9.6	20	83	3	219	19	20	25	35	1.96
8979--9061	21	4.0	21	73	6	78	25	16	24	33	1.96
8959--9057	42	2.4	43	77	11	100	21	18	23	37	1.94
16398--16536	61	2.3	59	76	11	140	35	10	16	37	1.84
18318--18426	52	2.2	48	80	14	114	33	4	1	59	1.28
20160--20193	10	3.4	10	87	0	50	20	5	0	73	1.04
30376--30869	105	4.7	105	99	0	961	35	24	18	21	1.96
32657--32691	17	1.9	17	88	11	52	31	5	0	62	1.18
32768--33018	137	1.8	136	84	10	348	27	9	5	57	1.54
38662--38705	2	22.0	2	100	0	88	50	0	0	50	1.00
43502--43554	24	2.2	25	82	6	72	39	26	9	24	1.86
43511--43556	24	1.9	24	95	0	83	36	30	6	26	1.82
58005--58059	26	2.1	26	96	0	101	49	16	10	23	1.77
60842--60879	17	2.2	18	85	4	51	42	0	5	52	1.24
61008--61066	29	2.0	29	83	6	75	54	1	5	38	1.33
61612--61686	35	2.1	35	92	4	125	41	22	1	34	1.63
62071--62325	128	2.0	126	92	1	420	36	14	12	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62650--62710	26	2.3	26	82	5	68	45	1	3	49	1.28
62787--62820	16	2.0	18	88	11	54	64	5	2	26	1.30
74415--74455	20	2.0	21	85	4	57	21	0	14	63	1.30

Tables:   1

The End!