Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006558.1 Hibiscus syriacus cultivar Beakdansim tig00016030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142797
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:35 original size:19 final size:19
Alignment explanation
Indices: 11--53 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
1 GAATTTGACT
11 ATCGCAACGC-AAAATGAAA
1 ATCGCAACGCGAAAAT-AAA
*
30 ATCGCAACGCGAAACTAAA
1 ATCGCAACGCGAAAATAAA
49 ATCGC
1 ATCGC
54 GTTGCGATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.47, C:0.26, G:0.16, T:0.12
Consensus pattern (19 bp):
ATCGCAACGCGAAAATAAA
Found at i:13660 original size:26 final size:26
Alignment explanation
Indices: 13624--13678 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
13614 CTGTTCAAGC
13624 AAGATTGTATTCAGTTAAATCATTCT
1 AAGATTGTATTCAGTTAAATCATTCT
13650 AAGATTGTATTCAGTTAAATCATTCT
1 AAGATTGTATTCAGTTAAATCATTCT
13676 AAG
1 AAG
13679 TTAATAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (26 bp):
AAGATTGTATTCAGTTAAATCATTCT
Found at i:18679 original size:13 final size:13
Alignment explanation
Indices: 18646--18681 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
18636 AGACTTCCAA
*
18646 GAGTCCCACGACC
1 GAGTCCCTCGACC
*
18659 GAGTCCCTCGATC
1 GAGTCCCTCGACC
18672 GAGTCCCTCG
1 GAGTCCCTCG
18682 GTCAACAACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.42, G:0.25, T:0.17
Consensus pattern (13 bp):
GAGTCCCTCGACC
Found at i:20626 original size:65 final size:65
Alignment explanation
Indices: 20555--20868 Score: 255
Period size: 65 Copynumber: 4.8 Consensus size: 65
20545 AGACAAAATT
* * * * *
20555 TTTCAAGAGAAATTGTCTCGAGAGAGACGAAATTTGTTT-AAAGGAAAACATATTAAAAGATTTT
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGG-AAACAGATTAAAAGATTTT
20619 G
65 G
* * *
20620 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAATGAAATAGATTCAAAGATTTTG
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGGAAACAGATTAAAAGATTTTG
**** *
20685 TTTCAAGGGAAACTGTCTCAAGAGAGA-AAAAAAAATTT--AAGAGAATA-TG-TCTCAAGAGAG
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAG-GAA-ACAGAT-T-AA-A-AG
20745 ATATAATTTG
60 --AT--TTTG
* *** * * * * *
20755 TTTTAAAAAAAACTGTCTCAAGGGAGACGAAATTTGCTTC-AAGGAAAACAAATTAAAAAATTTT
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGG-AAACAGATTAAAAGATTTT
20819 G
65 G
* *
20820 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAAATTGTTTCAAGGGAAAC
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGGAAAC
20869 CTTCTCAAGA
Statistics
Matches: 194, Mismatches: 38, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
62 3 0.02
63 5 0.03
64 9 0.05
65 120 0.62
66 9 0.05
67 2 0.01
68 2 0.01
69 1 0.01
70 27 0.14
71 9 0.05
72 6 0.03
73 1 0.01
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (65 bp):
TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGGAAACAGATTAAAAGATTTTG
Found at i:20757 original size:164 final size:167
Alignment explanation
Indices: 20385--20745 Score: 376
Period size: 164 Copynumber: 2.2 Consensus size: 167
20375 CAGATGATGC
* * * * * * * *
20385 TTCAAGAGAAGTTATCTCAAAAGAGAC-AGAATTCGTTTCAAGGGAAACGATCTTAAAGATATTT
1 TTCAAGAGAAATTGTCTCAAGAGAGACGA-AATTTGTTTAAAGGAAAAC-ATATTAAA-AGA-TT
* * *
20449 GTTGTTTCATGAGAAACGGTCTCAAAGTAAACAAAATTTTGTTTTAAGGGAAATAAATTCAAAGA
62 -TTGTTTCAAGAGAAACGGTCTCAAAGTAAACAAAATTTTGTTTCAAAGGAAATAAATTCAAAGA
* * * **
20514 TTTTGTGTTTCAAAAGAAACCGTGTCAAGGGAGACAAAATTT
126 TTTTGTGTTTCAAAAGAAACCGTCTCAAGAGAGAAAAAAAAT
*
20556 TTCAAGAGAAATTGTCTCGAGAGAGACGAAATTTGTTTAAAGGAAAACATATTAAAAGATTTTGT
1 TTCAAGAGAAATTGTCTCAAGAGAGACGAAATTTGTTTAAAGGAAAACATATTAAAAGATTTTGT
* * * * *
20621 TTCAAGGGAAACTGTCTCAAGAG-AGACAAAA-TTTGTTTCAAATGAAATAGATTCAAAGA-TTT
66 TTCAAGAGAAACGGTCTCAA-AGTAAACAAAATTTTGTTTCAAAGGAAATAAATTCAAAGATTTT
** *
20683 -TGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAAAAAT
130 GTGTTTCAAAAGAAACCGTCTCAAGAGAG-AAAAAAAAT
20721 TT-AAGAG-AATATGTCTCAAGAGAGA
1 TTCAAGAGAAAT-TGTCTCAAGAGAGA
20746 TATAATTTGT
Statistics
Matches: 160, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
163 3 0.02
164 41 0.26
165 11 0.07
166 24 0.15
167 28 0.17
168 4 0.03
169 2 0.01
170 7 0.04
171 39 0.24
172 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.29
Consensus pattern (167 bp):
TTCAAGAGAAATTGTCTCAAGAGAGACGAAATTTGTTTAAAGGAAAACATATTAAAAGATTTTGT
TTCAAGAGAAACGGTCTCAAAGTAAACAAAATTTTGTTTCAAAGGAAATAAATTCAAAGATTTTG
TGTTTCAAAAGAAACCGTCTCAAGAGAGAAAAAAAAT
Found at i:20859 original size:36 final size:36
Alignment explanation
Indices: 20817--20898 Score: 148
Period size: 36 Copynumber: 2.3 Consensus size: 36
20807 TTAAAAAATT
20817 TTGTTTCAAGGGAAA-CTGTCTCAAGAGAGACAAAAA
1 TTGTTTCAAGGGAAACCT-TCTCAAGAGAGACAAAAA
20853 TTGTTTCAAGGGAAACCTTCTCAAGAGAGACAAAAA
1 TTGTTTCAAGGGAAACCTTCTCAAGAGAGACAAAAA
20889 TTGTTTCAAG
1 TTGTTTCAAG
20899 TTGGGTCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 43 0.96
37 2 0.04
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (36 bp):
TTGTTTCAAGGGAAACCTTCTCAAGAGAGACAAAAA
Found at i:23068 original size:95 final size:95
Alignment explanation
Indices: 22893--23074 Score: 274
Period size: 95 Copynumber: 1.9 Consensus size: 95
22883 ATATATAAAT
** * * *
22893 ACCTTTATCAGGTTAGCTGAATCTTATCCATAAAGTCGGGGCGTTTAACCAATTGCTTTAGAGGG
1 ACCTTTATCAGACTAGCTGAATATTATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAAAGGG
*
22958 ACAGCTAAAGCTTTATTGTATAGTATACTC
66 ACAACTAAAGCTTTATTGTATAGTATACTC
* *
22988 ACCTTTATCAGACTAGCTGAATATTATCCATAAAGTCGGGGGGTTTAATCAATTGCTCTAAAGGG
1 ACCTTTATCAGACTAGCTGAATATTATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAAAGGG
* *
23053 ACAACTCAAGTTTTATTGTATA
66 ACAACTAAAGCTTTATTGTATA
23075 TAATTAATAT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 77 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (95 bp):
ACCTTTATCAGACTAGCTGAATATTATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAAAGGG
ACAACTAAAGCTTTATTGTATAGTATACTC
Found at i:26868 original size:27 final size:27
Alignment explanation
Indices: 26821--26873 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
26811 TGTGCTAGAG
*
26821 AAAAAGGAAAATGAATGATAAAGAAAGT
1 AAAAAAGAAAATGAA-GATAAAGAAAGT
26849 AAAAAAGACAAATGAA-ATAAAGAAA
1 AAAAAAGA-AAATGAAGATAAAGAAA
26874 ATAAGAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 9 0.39
28 7 0.30
29 7 0.30
ACGTcount: A:0.70, C:0.02, G:0.17, T:0.11
Consensus pattern (27 bp):
AAAAAAGAAAATGAAGATAAAGAAAGT
Found at i:26899 original size:15 final size:16
Alignment explanation
Indices: 26862--26905 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
26852 AAAGACAAAT
*
26862 GAAATAAAGAAAATAA
1 GAAATAAAGCAAATAA
*
26878 GAAATAAAGCAAATCA
1 GAAATAAAGCAAATAA
*
26894 -AAATAAGGCAAA
1 GAAATAAAGCAAA
26906 AAAATGAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.68, C:0.07, G:0.14, T:0.11
Consensus pattern (16 bp):
GAAATAAAGCAAATAA
Found at i:27095 original size:24 final size:23
Alignment explanation
Indices: 27063--27124 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
27053 ATCTATACCT
**
27063 ATATATATAACAAATAACGATATA
1 ATATATATAA-AAATAAAAATATA
*
27087 ATATATATATATAATAAAAATATA
1 ATATATATA-AAAATAAAAATATA
27111 ATATA-ATAAAAATA
1 ATATATATAAAAATA
27125 GAGGAATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 5 0.15
23 3 0.09
24 24 0.73
25 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (23 bp):
ATATATATAAAAATAAAAATATA
Found at i:27114 original size:16 final size:17
Alignment explanation
Indices: 27089--27124 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
27079 ACGATATAAT
27089 ATATATATATAATAAAA
1 ATATATATATAATAAAA
27106 ATATA-ATATAATAAAA
1 ATATATATATAATAAAA
27122 ATA
1 ATA
27125 GAGGAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATATATATAATAAAA
Found at i:30828 original size:15 final size:15
Alignment explanation
Indices: 30808--30837 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
30798 ATAATATATT
*
30808 AATAAATATCAATTA
1 AATAAATATAAATTA
30823 AATAAATATAAATTA
1 AATAAATATAAATTA
30838 TTTTTTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAATATAAATTA
Found at i:35562 original size:124 final size:125
Alignment explanation
Indices: 35315--35567 Score: 303
Period size: 124 Copynumber: 2.0 Consensus size: 125
35305 TGAAACTGGT
*
35315 AAACTATGAAAGCAATCCAATACTATGGTATGATCTATTATGATTACTACTATATAGTGCTTACT
1 AAACTATGAAAGCAATCCAAGACTATGGTATGATCTATTATG--TACTACTATATAGTGCTTACT
* ** *
35380 GGCTCGAATCCGAATGTACTTCGGCAAGAGTTGCATTACTTGTAATACAAACATGAAACAGA
64 GGCTCGAATCCGAATGTACTTCGACAAGAACTGCATTACTTGTAATACAAACAGGAAACAGA
* * * * * *
35442 AAACTATGAGATCAATCCAAGACTATGGTATGATCTCTTATG-ACTATTATATTGTG-TTCATTG
1 AAACTATGAAAGCAATCCAAGACTATGGTATGATCTATTATGTACTACTATATAGTGCTT-ACTG
* * * * * * *
35505 GCTTGAATTCGAATGTACTTTGACGAGAACTGCGTTACTTGTAATACAATCAGGAAACTGA
65 GCTCGAATCCGAATGTACTTCGACAAGAACTGCATTACTTGTAATACAAACAGGAAACAGA
35566 AA
1 AA
35568 GCAAAATAGG
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
123 2 0.02
124 67 0.63
127 38 0.36
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (125 bp):
AAACTATGAAAGCAATCCAAGACTATGGTATGATCTATTATGTACTACTATATAGTGCTTACTGG
CTCGAATCCGAATGTACTTCGACAAGAACTGCATTACTTGTAATACAAACAGGAAACAGA
Found at i:40964 original size:29 final size:29
Alignment explanation
Indices: 40931--41013 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
40921 TGTTTTAATG
*
40931 CACCGAAT-AGCATTAGTCAAAAAGGAGGA
1 CACCGAATGA-CATTAGTAAAAAAGGAGGA
* *
40960 CACCGAATGACATTAGTTAAAAAA-AAGGG
1 CACCGAATGACATTAG-TAAAAAAGGAGGA
40989 CACCGAATGACATTAGTAAAAAAGG
1 CACCGAATGACATTAGTAAAAAAGG
41014 GGCAATTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.15
29 33 0.70
30 7 0.15
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (29 bp):
CACCGAATGACATTAGTAAAAAAGGAGGA
Found at i:42263 original size:15 final size:16
Alignment explanation
Indices: 42239--42273 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
42229 TGTCAGATTG
*
42239 AAATCTAGAA-GGGAA
1 AAATCAAGAACGGGAA
42254 AAATCAAGAACGGGAA
1 AAATCAAGAACGGGAA
42270 AAAT
1 AAAT
42274 GATTTTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.57, C:0.09, G:0.23, T:0.11
Consensus pattern (16 bp):
AAATCAAGAACGGGAA
Found at i:43782 original size:20 final size:19
Alignment explanation
Indices: 43734--43784 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
43724 AAGGTGATTG
43734 GTGTATCGATGCATGGGTA
1 GTGTATCGATGCATGGGTA
* *
43753 GTGCATCGATGCAT-TGTA
1 GTGTATCGATGCATGGGTA
43771 GAATGTATCGATGC
1 G--TGTATCGATGC
43785 TCTTCAAGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 13 0.48
20 10 0.37
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (19 bp):
GTGTATCGATGCATGGGTA
Found at i:54649 original size:29 final size:29
Alignment explanation
Indices: 54623--54696 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
54613 CACCGAATAA
*
54623 CATTAGTCAAAAAGGGGGGCATCGAATGG
1 CATTAGTAAAAAAGGGGGGCATCGAATGG
**
54652 CATTAGTAAAAAAAAGGGGCATCGAATGG
1 CATTAGTAAAAAAGGGGGGCATCGAATGG
54681 CATTAGTAAAAAAGGG
1 CATTAGTAAAAAAGGG
54697 ACAATTTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.42, C:0.11, G:0.30, T:0.18
Consensus pattern (29 bp):
CATTAGTAAAAAAGGGGGGCATCGAATGG
Found at i:56614 original size:230 final size:229
Alignment explanation
Indices: 56207--56695 Score: 897
Period size: 230 Copynumber: 2.1 Consensus size: 229
56197 GTAAAGTATC
* * *
56207 TATCTTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTGGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTGGT
56272 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
*
56337 TGTATAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATT
131 TGTATAAATGAAATTATTAAATTAATATTGTACGTGGAAAACATGAAACACTATTAAAAAAAATT
56402 GAAACATAAATTACATAACTTTAAAAAAAATATA
196 GAAACATAAATTACATAACTTTAAAAAAAATATA
* *
56436 TATCATTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAACATTTTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATTATATTTGG
56501 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTT
65 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTT
*
56566 TTGTGTAAATGAAATTATTAAATTAATATTGTACGTGGAAAACATGAAACACTATTAAAAAAAAT
130 TTGTATAAATGAAATTATTAAATTAATATTGTACGTGGAAAACATGAAACACTATTAAAAAAAAT
*
56631 TGAAACATAAATTACATAACTTTAAAAAAAGTATA
195 TGAAACATAAATTACATAACTTTAAAAAAAATATA
56666 TATCATTTTTATAAAAGTGTCCATACTTAT
1 TATCATTTTTATAAAAGTGTCCATACTTAT
56696 AAAAGTAGGT
Statistics
Matches: 250, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
229 36 0.14
230 214 0.86
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (229 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTGGT
TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
TGTATAAATGAAATTATTAAATTAATATTGTACGTGGAAAACATGAAACACTATTAAAAAAAATT
GAAACATAAATTACATAACTTTAAAAAAAATATA
Found at i:56998 original size:20 final size:19
Alignment explanation
Indices: 56975--57021 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
56965 CGATATACCA
56975 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
56995 GGTAACAAAATGATAAAACT
1 GGTAA-AAAATGATAAAACC
57015 GGTAAAA
1 GGTAAAA
57022 CGTTACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:57177 original size:20 final size:19
Alignment explanation
Indices: 57154--57200 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
57144 CGATATAACA
57154 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
57174 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
57194 GGTAAAA
1 GGTAAAA
57201 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:57185 original size:179 final size:182
Alignment explanation
Indices: 56762--57233 Score: 646
Period size: 179 Copynumber: 2.6 Consensus size: 182
56752 GATCCAAATT
* * * *
56762 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTAT-AGAAATGAT
1 AAAAAAGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCA-AAATGAT
* * * * *
56826 AAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGAAACTT
65 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGAAACTT
*
56891 CGTGAATTTAAAAGAGAAGCAATTTTAAATCATATAAAGTGTCGATACTTTTA
130 CGTGAATTTAAAAGAGAAGCAATTTTAAAGCATATAAAGTGTCGATACTTTTA
** * *
56944 AAAAAATGTATCGATCCAGTACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGAT
1 AAAAAA-GTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
* * * * *
57009 AAAACTGGTAAAACGTTACCGGATATATTGAACGTGTTGATACTTT-ATATAAGGATCGACACTT
65 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGAAACTT
* * ** * *
57073 TGTGAATTTAAAAGAGAAGCATTTTTAGCGCCTATAATGTGTCGATAC-TTTA
130 CGTGAATTTAAAAGAGAAGCAATTTTAAAGCATATAAAGTGTCGATACTTTTA
* *
57125 AAAAAA-TATCGATCTACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAAAGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
*
57189 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
57234 CGTAAGTACG
Statistics
Matches: 254, Mismatches: 34, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
179 93 0.37
181 10 0.04
182 63 0.25
183 87 0.34
184 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAAAAGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGAAACTTC
GTGAATTTAAAAGAGAAGCAATTTTAAAGCATATAAAGTGTCGATACTTTTA
Found at i:57202 original size:17 final size:19
Alignment explanation
Indices: 57163--57205 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
57153 AGGTAAAAAT
57163 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
57183 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
57200 ATGATA
1 ATGATA
57206 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:59447 original size:21 final size:21
Alignment explanation
Indices: 59421--59485 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
59411 AAGACAATCA
*
59421 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
59442 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
59463 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
59484 AG
1 AG
59486 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:61390 original size:19 final size:19
Alignment explanation
Indices: 61366--61414 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
61356 AATGTAGGGT
61366 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
61385 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
61404 TAATTTTGTAT
1 TAATTTTGTAT
61415 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:61883 original size:200 final size:200
Alignment explanation
Indices: 61507--63280 Score: 3336
Period size: 200 Copynumber: 8.9 Consensus size: 200
61497 ATACACATTA
*
61507 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAAGTGTCGATCCCAAAAACATCGAAAACC
1 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAAACATCGAAAACC
61572 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
* *
61637 ATATGTCTAAATAATGTGTCTACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
130 ATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATG
61701 GAAAAC
195 GAAAAC
61707 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
61772 ACAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
61837 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
61902 AAAAC
196 AAAAC
*
61907 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
61972 AAAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
62037 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
62102 AAAAC
196 AAAAC
*
62107 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
62172 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
62237 TATGTCTAAATAATGTGTCGACACTTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATG
131 TATGTCTAAATAATGTGTCGACAC-TTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATG
62302 GAAAAC
195 GAAAAC
*
62308 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
* *
62373 AAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGCATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
62438 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
62503 AAAAC
196 AAAAC
*
62508 AGGGTGAAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
62573 AAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
62638 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTAGATAGTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
62703 AAAAC
196 AAAAC
*
62708 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAATATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
62773 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
62838 TATGTCTAAATAATGTGTCGACACGTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
62903 AAAAC
196 AAAAC
*
62908 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
62973 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
63038 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
63103 AAAAC
196 AAAAC
63108 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
63172 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
63237 TATGTCTAAGTAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
63281 CTAATTTAAA
Statistics
Matches: 1544, Mismatches: 28, Indels: 5
0.98 0.02 0.00
Matches are distributed among these distances:
199 259 0.17
200 1088 0.70
201 197 0.13
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (200 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
AAAAC
Found at i:63048 original size:801 final size:799
Alignment explanation
Indices: 61507--63280 Score: 3352
Period size: 801 Copynumber: 2.2 Consensus size: 799
61497 ATACACATTA
*
61507 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAAGTGTCGATCCCAAAAACATCGAAAACC
1 AGGGTGCAACCATAAAGTGTCGATCCATATAT--AAAAGTGTCGATCCCAAAAACATCGAAAACC
61572 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
64 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
*
61637 ATATGTCTAAATAATGTGTCTACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
129 ATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
*
61701 GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
194 GAAAACAGGGTGAAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
* *
61766 AAACCAACAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATG
259 AAACCAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATG
* *
61831 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
324 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTAGATAGTTTTGGTCCAGAAT
*
61896 GAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAAC
389 GAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAAC
*
61961 ATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAAGTATACCGGTT
454 ATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTT
*
62026 TTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCC
519 TTATGAGAGAATATGTCTAAATAATGTGTCGACACGTTTTTAGTTTGTGTCGATAGTTTTGGTCC
* *
62091 AGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCA
584 AGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCA
62156 AAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATAC
649 AAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATAC
62221 CAGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTTAGTTTGTGTCGATAGTTT
714 CAGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACAC-TTTTTTAGTTTGTGTCGATAGTTT
62286 TGGTCCAGAATGAATGGAAAAC
778 TGGTCCAGAATGAATGGAAAAC
62308 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATA-AAAGTGTCGATCCCAAAAACATCGAAAACCA
* *
62373 AAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGCATACCGGTTTTATGAGAGAA
65 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
62438 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
130 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
62503 AAAACAGGGTGAAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAA
195 AAAACAGGGTGAAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAA
62568 AACCAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGA
260 AACCAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGA
62633 GAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTAGATAGTTTTGGTCCAGAATG
325 GAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTAGATAGTTTTGGTCCAGAATG
*
62698 AATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAATA
390 AATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACA
62763 TCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTT
455 TCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTT
62828 TATGAGAGAATATGTCTAAATAATGTGTCGACACGTTTTTAGTTTGTGTCGATAGTTTTGGTCCA
520 TATGAGAGAATATGTCTAAATAATGTGTCGACACGTTTTTAGTTTGTGTCGATAGTTTTGGTCCA
62893 GAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAA
585 GAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAA
62958 AAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACC
650 AAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACC
*
63023 GGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTG
715 AGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTG
63088 GTCCAGAATGAATGGAAAAC
780 GTCCAGAATGAATGGAAAAC
63108 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAAACATCGAAAACCAA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAAACATCGAAAACCAA
63173 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
63238 ATGTCTAAGTAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
63281 CTAATTTAAA
Statistics
Matches: 952, Mismatches: 19, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
799 138 0.14
800 196 0.21
801 618 0.65
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (799 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAAACATCGAAAACCAA
AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGA
AAACAGGGTGAAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAA
ACCAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTAGATAGTTTTGGTCCAGAATGA
ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATATGTCTAAATAATGTGTCGACACGTTTTTAGTTTGTGTCGATAGTTTTGGTCCAG
AATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAA
AACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCA
GTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGG
TCCAGAATGAATGGAAAAC
Found at i:64755 original size:6 final size:6
Alignment explanation
Indices: 64744--64831 Score: 61
Period size: 6 Copynumber: 14.7 Consensus size: 6
64734 CAAGCGGTCA
* * * *
64744 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATA- ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA-AG ATGAAG ATGAAG
* * * * * * *
64792 CTGACG ATGAAG ATGATG ACGATG ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
64832 TCCAAACAAG
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
6 65 1.00
ACGTcount: A:0.39, C:0.08, G:0.32, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:64790 original size:36 final size:36
Alignment explanation
Indices: 64743--64825 Score: 121
Period size: 36 Copynumber: 2.3 Consensus size: 36
64733 CCAAGCGGTC
*
64743 AATGAAGATGAAGCTGACGATGAAGATGACGATGAT
1 AATGAAGATGAAGCTGACGATGAAGATGACGACGAT
* *
64779 AATGACGATGAAGCTGACGATGAAGATGATGACGAT
1 AATGAAGATGAAGCTGACGATGAAGATGACGACGAT
* *
64815 GATGATGATGA
1 AATGAAGATGA
64826 TGATGATCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.40, C:0.08, G:0.31, T:0.20
Consensus pattern (36 bp):
AATGAAGATGAAGCTGACGATGAAGATGACGACGAT
Found at i:64818 original size:3 final size:3
Alignment explanation
Indices: 64761--64832 Score: 63
Period size: 3 Copynumber: 24.0 Consensus size: 3
64751 TGAAGCTGAC
* * * * * * * *
64761 GAT GAA GAT GAC GAT GAT AAT GAC GAT GAA GCT GAC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
64809 GAC GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT
64833 CCAAACAAGT
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.38, C:0.07, G:0.32, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:64832 original size:12 final size:12
Alignment explanation
Indices: 64744--64831 Score: 88
Period size: 12 Copynumber: 7.3 Consensus size: 12
64734 CAAGCGGTCA
*
64744 ATGAAGATGAAG
1 ATGACGATGAAG
*
64756 CTGACGATGAAG
1 ATGACGATGAAG
64768 ATGACGATGATA-
1 ATGACGATGA-AG
64780 ATGACGATGAAG
1 ATGACGATGAAG
*
64792 CTGACGATGAAG
1 ATGACGATGAAG
* * *
64804 ATGATGACGATG
1 ATGACGATGAAG
* *
64816 ATGATGATGATG
1 ATGACGATGAAG
64828 ATGA
1 ATGA
64832 TCCAAACAAG
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
11 1 0.02
12 63 0.97
13 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.32, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:68610 original size:25 final size:25
Alignment explanation
Indices: 68582--68646 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
68572 TTATCATTAA
68582 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
68607 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
68632 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
68647 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:69023 original size:23 final size:23
Alignment explanation
Indices: 68992--69064 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
68982 ATAGGTAAAA
*
68992 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
69015 ATATAATGTAATATGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
69038 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
69061 ATAT
1 ATAT
69065 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:69089 original size:46 final size:45
Alignment explanation
Indices: 68992--69089 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
68982 ATAGGTAAAA
* * *
68992 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATCTAGCATTT
* *
69038 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCATTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATCTAGCATTT
*
69084 TTATAA
1 ATATAA
69090 AAGTGTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATCTAGCATTT
Found at i:69453 original size:23 final size:23
Alignment explanation
Indices: 69422--69494 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
69412 ATAGGTAAAA
*
69422 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
69445 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
69468 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
69491 ATAT
1 ATAT
69495 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:69880 original size:23 final size:23
Alignment explanation
Indices: 69850--69917 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
69840 TAAAAATGTG
69850 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGCGCTTATATA
* *
69873 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCGCTTATATA
* *
69896 ATGTAATAGGTAGTGGTTATAT
1 ATGTAATAGGTAGCGCTTATAT
69918 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATGTAATAGGTAGCGCTTATATA
Found at i:70308 original size:23 final size:23
Alignment explanation
Indices: 70278--70345 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
70268 TAAAAATGTG
70278 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGCGCTTATATA
*
70301 ATGTAATAGGTAGCGTTTATATA
1 ATGTAATAGGTAGCGCTTATATA
*
70324 ATGTAATAGGTAGTGCTTATAT
1 ATGTAATAGGTAGCGCTTATAT
70346 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (23 bp):
ATGTAATAGGTAGCGCTTATATA
Found at i:70733 original size:23 final size:23
Alignment explanation
Indices: 70702--70774 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
70692 ATAGGTAAAA
*
70702 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
70725 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
70748 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
70771 ATAT
1 ATAT
70775 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:71168 original size:23 final size:22
Alignment explanation
Indices: 71138--71209 Score: 101
Period size: 23 Copynumber: 3.3 Consensus size: 22
71128 TAAAAATGTG
71138 ATGTAATAGGTAGCGCTTATAT
1 ATGTAATAGGTAGCGCTTATAT
*
71160 AATGTAATAGGTAGCGTTTATAT
1 -ATGTAATAGGTAGCGCTTATAT
* *
71183 ATGTAATAGGTTGTGCTTATAT
1 ATGTAATAGGTAGCGCTTATAT
71205 -TGTAA
1 ATGTAA
71210 AGTATCTATC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.11
22 19 0.42
23 21 0.47
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (22 bp):
ATGTAATAGGTAGCGCTTATAT
Found at i:71585 original size:23 final size:23
Alignment explanation
Indices: 71554--71626 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
71544 ATAGGTAAAA
*
71554 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
71577 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
71600 ATATAATGTAATAAGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
71623 ATAT
1 ATAT
71627 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:72015 original size:23 final size:23
Alignment explanation
Indices: 71984--72054 Score: 97
Period size: 23 Copynumber: 3.1 Consensus size: 23
71974 ATAGGTAAAA
*
71984 ATGTGATGTAATAGGTAGCGCTT
1 ATGTAATGTAATAGGTAGCGCTT
*
72007 ATGTAATGTAATAGGTAGCGTTT
1 ATGTAATGTAATAGGTAGCGCTT
* * *
72030 ATATAATATAATAGGTAGTGCTT
1 ATGTAATGTAATAGGTAGCGCTT
72053 AT
1 AT
72055 ATTGTAAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (23 bp):
ATGTAATGTAATAGGTAGCGCTT
Found at i:72467 original size:24 final size:23
Alignment explanation
Indices: 72414--72487 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
72404 ATAGGTAAAA
*
72414 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
72437 ATATAATGTAATAGGTATCGTTTT
1 ATATAATGTAATAGGTAGCG-CTT
* *
72461 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
72484 ATAT
1 ATAT
72488 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
23 24 0.55
24 20 0.45
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:72691 original size:431 final size:430
Alignment explanation
Indices: 68785--73081 Score: 7868
Period size: 430 Copynumber: 10.0 Consensus size: 430
68775 CTTTGGTTAA
* * *
68785 TATTGTTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
*
68849 TGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
*
68914 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTGTAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
*
68979 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTAGCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
*
69044 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
*
69109 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAATTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
69174 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
69214 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
69279 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
*
69344 ACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
*
69409 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
* *
69474 TGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
69539 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGA-TTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
* *
69603 TAGGCGTTTAATAATTTATTTTTTACGTTACG--ATATA-
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
69640 TATTATTAAATTAAAAATTCTAAATATTATTTTAT-AAA-AT-AAAACAATCAAATAA-TTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
69701 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
*
69766 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
130 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* *
69831 TATAATAGGTAAAAATGTGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
195 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
* *
69896 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTT
260 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTT
* *
69961 CAATGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAATTTTAAGATATTAATTTAGTAATT
325 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
70026 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
390 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
70067 TATTATTAAATT-AAAATTCT-AATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
70130 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
*
70195 ACATAAATTACATAACTTTAAAAGAAGTATCAATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
*
70260 ATAATAGGTAAAAATGTGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
70325 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
70390 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
70455 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
70495 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATAT-AAAACAATCAAATAATTTTTTT
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAA-TTTTTT
*
70559 GTGCAAATGAAA-TATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAAAAAATTGA
65 GTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGA
70623 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
130 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
70688 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
195 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
* *
70753 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
260 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTT
70818 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
325 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
*
70883 ATAGGCGTTTAATGATTTATTTTTTACGTTACGATATATAT
390 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
*
70924 TATTATTAAATTAAAAATTCTCAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
70989 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
* *
71054 AACATAAATTACATAACTTTAAAAGAAGTATCAATCCTTTTTATAAAAAGTATAGACACTTTCAA
130 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
71119 TATAATAGGTAAAAATGTGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATAT-
195 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
*
71183 ATGTAATAGGTTGTGCTTATATTGTAAAGTATCTATCCTTTTTAT-AAAGTGTCCATACTTTTTT
260 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTT
71247 CACTGTGG-AAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
325 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
71311 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
390 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
71352 T-TTATTAAATT-AAAATTCTAAATATTATTTTAT-AAA-ATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
71413 TGCAAATGAAATTATTAAATTAATATTGTAGGT-GAAAACATGAAACACTATT-AAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
71476 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
*
71541 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
* * * *
71606 TGTAATAAGTAGTGGTTATATTGTAAAGTATCTATACTTTTTATAAAAGTGTCTATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
*
71671 ACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
*
71736 TAGGCGTTTAATGATTTATTTTTTACGTTACGATATATAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
* *
71776 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATTATTTTTTT
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
71841 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
71906 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
* *
71971 ATAATAGGTAAAAATGTGATGTAATAGGTAGCGCTTATGTAATGTAATAGGTAGCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
*
72036 TATAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
72101 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
*
72166 TAGGCGTCTAATGATTTATTTTTTACATTACGATATATAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
72206 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
*
72271 TGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
72336 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
*
72401 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTTATATA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG-TTTATATA
* *
72466 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
260 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTT
*
72531 CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
325 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
72596 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
390 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
* *
72637 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAATAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
72702 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
*
72767 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTCAA
130 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
72832 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
195 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
* *
72897 ATGTAATAGGTAGTGCTTATATTGTAAAGTATTTATTCTTTTTATAAAAGTGTCCATACTTTTTT
260 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTT
*
72962 TACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
325 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
73027 ATAGGCGTCTAATGATTTATTTTTTACGTTACG--ATATAT
390 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
73066 TATTATTAAATTAAAA
1 TATTATTAAATTAAAA
73082 CATAAACATA
Statistics
Matches: 3751, Mismatches: 90, Indels: 54
0.96 0.02 0.01
Matches are distributed among these distances:
421 135 0.04
422 100 0.03
423 301 0.08
424 212 0.06
425 29 0.01
426 94 0.03
427 32 0.01
428 485 0.13
429 620 0.17
430 1022 0.27
431 590 0.16
432 131 0.03
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (430 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAA
TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTC
ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
Found at i:72877 original size:23 final size:23
Alignment explanation
Indices: 72846--72918 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
72836 ATAGGTAAAA
*
72846 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
72869 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
72892 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
72915 ATAT
1 ATAT
72919 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:74218 original size:20 final size:20
Alignment explanation
Indices: 74193--74286 Score: 143
Period size: 20 Copynumber: 4.7 Consensus size: 20
74183 TTTTCCCAAT
74193 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
** *
74213 TCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
74234 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
74254 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
*
74274 TCGCAACGCGAAT
1 TCGCAATGCGAAT
74287 TGGGAAAATC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 49 0.74
21 17 0.26
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:74296 original size:41 final size:41
Alignment explanation
Indices: 74193--74305 Score: 120
Period size: 41 Copynumber: 2.8 Consensus size: 41
74183 TTTTCCCAAT
* * **
74193 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTGGGAAAA
1 TCGCAACGCGAATAAGAAAATCGCAATGCGAATTAAGAAAA
* * *
74234 TCGCAATGCGAATAAGTAAATCGCAATGCGAA-TAAGTAAA
1 TCGCAACGCGAATAAGAAAATCGCAATGCGAATTAAGAAAA
** *
74274 TCGCAACGCGAATTGGGAAAATCTCAATGCGA
1 TCGCAACGCGAA-TAAGAAAATCGCAATGCGA
74306 TACTGACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 16 0.25
41 47 0.75
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (41 bp):
TCGCAACGCGAATAAGAAAATCGCAATGCGAATTAAGAAAA
Found at i:74323 original size:20 final size:20
Alignment explanation
Indices: 74302--74408 Score: 108
Period size: 20 Copynumber: 5.3 Consensus size: 20
74292 AAATCTCAAT
*
74302 GCGATACTGACTATCGCAAT
1 GCGATACTGACTATCGCAAC
* *
74322 GCGATAAT-ACAAAATCGCAAC
1 GCGATACTGAC--TATCGCAAC
* * *
74343 GAGATACTTACTTTCGCAAC
1 GCGATACTGACTATCGCAAC
*
74363 GCGATACTGACTTTCGCAAC
1 GCGATACTGACTATCGCAAC
* *
74383 GCGATTCTGACTTTCGCAAC
1 GCGATACTGACTATCGCAAC
74403 GCGATA
1 GCGATA
74409 ATACATAATC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.03
20 56 0.77
21 13 0.18
22 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (20 bp):
GCGATACTGACTATCGCAAC
Found at i:74336 original size:41 final size:41
Alignment explanation
Indices: 74291--74428 Score: 145
Period size: 41 Copynumber: 3.4 Consensus size: 41
74281 GCGAATTGGG
* * * *
74291 AAAATCTCAATGCGATACTGACTATCGCAATGCGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* * *
74332 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATACTGAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAAT-AC
** *
74374 --TTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* *
74413 ATAATCGCAATGCGAT
1 AAAATCGCAACGCGAT
74429 TTTCAAAGCG
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.03
40 31 0.40
41 43 0.55
42 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
Found at i:74946 original size:20 final size:20
Alignment explanation
Indices: 74923--74960 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74913 TCAAATTTGC
74923 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
74943 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
74961 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:76288 original size:18 final size:18
Alignment explanation
Indices: 76267--76311 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
76257 TCCACTTCGG
*
76267 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
76285 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
76303 GAGCCATCA
1 GAGCCATCA
76312 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:76841 original size:19 final size:20
Alignment explanation
Indices: 76787--76852 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
76777 TAGTTTACTT
* *
76787 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
76807 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* *
76827 TCGCAATGC-GAAATGA-AA
1 TCGCAACGCGGAAATGACTA
76845 TCGCAACG
1 TCGCAACG
76853 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
18 8 0.21
19 6 0.15
20 25 0.64
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:76877 original size:19 final size:19
Alignment explanation
Indices: 76787--76888 Score: 63
Period size: 20 Copynumber: 5.6 Consensus size: 19
76777 TAGTTTACTT
* **
76787 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
76807 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
76827 TCGCAATGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
76845 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
76859 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
76878 TCGCAATGCGA
1 TCGCAACGCGA
76889 TTTGTGTTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.15
16 4 0.06
18 8 0.12
19 20 0.30
20 24 0.36
21 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.22, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:76929 original size:19 final size:18
Alignment explanation
Indices: 76907--76942 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
76897 TCGCGTTGCG
76907 ATTTTGTCGTTGAGATTTC
1 ATTTTG-CGTTGAGATTTC
*
76926 ATTTTGCGTTGCGATTT
1 ATTTTGCGTTGAGATTT
76943 TGTCGTTGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.14, C:0.11, G:0.22, T:0.53
Consensus pattern (18 bp):
ATTTTGCGTTGAGATTTC
Found at i:76935 original size:32 final size:33
Alignment explanation
Indices: 76895--76973 Score: 124
Period size: 32 Copynumber: 2.4 Consensus size: 33
76885 GCGATTTGTG
76895 TTTCGCGTTGCGATTTTGTCGTTGAGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGAGATTTTCA
* *
76927 TTTTGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGAGATTTTCA
*
76960 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
76974 AGCCATTTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 25 0.60
33 17 0.40
ACGTcount: A:0.11, C:0.16, G:0.24, T:0.48
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGAGATTTTCA
Found at i:76944 original size:13 final size:14
Alignment explanation
Indices: 76900--76957 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
76890 TTGTGTTTCG
76900 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
76914 CGTTGAGATTTCATTTT
1 CGTTGCGA-TT--TTGT
76931 GCGTTGCGATTTTGT
1 -CGTTGCGATTTTGT
76946 CGTTGCGATTTT
1 CGTTGCGATTTT
76958 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.53
15 5 0.14
17 5 0.14
18 7 0.19
ACGTcount: A:0.10, C:0.14, G:0.26, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:76970 original size:19 final size:19
Alignment explanation
Indices: 76946--77012 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
76936 GCGATTTTGT
**
76946 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
76965 CATTGCGATAGCCATTTCCG
1 CGTTGCGATAGTCATTT-CG
76985 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
77004 CGTTGCGAT
1 CGTTGCGAT
77013 TTTAAGTTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:76992 original size:20 final size:19
Alignment explanation
Indices: 76958--77012 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
76948 TTGCGATTTT
*
76958 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
76977 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
76997 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
77013 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:77109 original size:27 final size:28
Alignment explanation
Indices: 77045--77111 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 28
77035 TAAACCATTA
*
77045 TTCTTCTGGAATGTTTATATATGTTGTC
1 TTCTTCTGGAATGTTTATATAAGTTGTC
*
77073 TT-TT-T-AAATGTTTATATAAG-TG-C
1 TTCTTCTGGAATGTTTATATAAGTTGTC
77096 TTACTTCTGGAATGTT
1 TT-CTTCTGGAATGTT
77112 ATCTGAGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 15 0.47
26 2 0.06
27 8 0.25
28 2 0.06
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.52
Consensus pattern (28 bp):
TTCTTCTGGAATGTTTATATAAGTTGTC
Found at i:79057 original size:19 final size:19
Alignment explanation
Indices: 79002--79050 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
78992 ATCGCAACGA
79002 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
79021 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
79040 GAAAATCGCAA
1 GAAAATCGCAA
79051 CAAGAAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.20, T:0.14
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:79113 original size:20 final size:20
Alignment explanation
Indices: 79088--79165 Score: 147
Period size: 20 Copynumber: 3.9 Consensus size: 20
79078 TCGCATTGCG
*
79088 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
79108 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
79128 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
79148 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
79166 TCAAATGAAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.37
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:80249 original size:24 final size:24
Alignment explanation
Indices: 80222--80275 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
80212 GTATTCGAAA
* *
80222 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
80246 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
80270 TTTGAT
1 TTTGAT
80276 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:82785 original size:19 final size:19
Alignment explanation
Indices: 82763--82879 Score: 110
Period size: 19 Copynumber: 6.7 Consensus size: 19
82753 GGAAATTACT
82763 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
82782 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
82796 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
82815 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
82829 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
82848 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
82867 ATCGCAACGCGAA
1 ATCGCAATGCGAA
82880 TTTAATTTCG
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
14 18 0.23
15 2 0.03
16 3 0.04
17 3 0.04
18 2 0.03
19 49 0.64
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:82810 original size:33 final size:33
Alignment explanation
Indices: 82762--82854 Score: 134
Period size: 33 Copynumber: 2.8 Consensus size: 33
82752 CGGAAATTAC
82762 TATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 TATCGCAATGCGAAATGAAAATCGCAACGAGA-A
* **
82796 -ATCGCAATGTGAAATGAAAATCGCAACGCTAA
1 TATCGCAATGCGAAATGAAAATCGCAACGAGAA
*
82828 TTTCGCAATGCGAAATGAAAATCGCAA
1 TATCGCAATGCGAAATGAAAATCGCAA
82855 TGCGAAATGA
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
32 1 0.02
33 52 0.98
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.18
Consensus pattern (33 bp):
TATCGCAATGCGAAATGAAAATCGCAACGAGAA
Found at i:82963 original size:33 final size:33
Alignment explanation
Indices: 82875--82964 Score: 126
Period size: 33 Copynumber: 2.7 Consensus size: 33
82865 AAATCGCAAC
* * *
82875 GCGAATTTAATTTCGCGTTGCGTTTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
*
82908 GCGATTTTCATTTCGCGGTGCGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
* *
82941 GTGATTTTCATTTCGCATTGCGAT
1 GCGATTTTCATTTCGCGTTGCGAT
82965 AGTACTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.44
Consensus pattern (33 bp):
GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
Found at i:83059 original size:14 final size:15
Alignment explanation
Indices: 83040--83076 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
83030 CATCAATTAA
83040 ACAAATCAA-CTTTT
1 ACAAATCAACCTTTT
83054 ACAAAT-AACCTTTT
1 ACAAATCAACCTTTT
83068 ACAAATCAA
1 ACAAATCAA
83077 TTAAACAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 17 0.81
15 2 0.10
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (15 bp):
ACAAATCAACCTTTT
Found at i:84488 original size:21 final size:21
Alignment explanation
Indices: 84422--84488 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
84412 GTGAATCGGG
*
84422 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
84442 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
84464 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
84485 CTCT
1 CTCT
84489 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:84507 original size:42 final size:41
Alignment explanation
Indices: 84422--84530 Score: 103
Period size: 42 Copynumber: 2.6 Consensus size: 41
84412 GTGAATCGGG
* *
84422 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCAACGATGACAGGGGC
* * *
84464 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCAACG-ATGACAGGGGC
* * * *
84506 CTCTTCAACGATAGGAGTGGACTCT
1 CTCTTGAACGGTGGGAGGGGACTCT
84531 TGATGGATGA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 4 0.07
42 48 0.86
43 4 0.07
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCAACGATGACAGGGGC
Found at i:84938 original size:91 final size:90
Alignment explanation
Indices: 84760--84946 Score: 286
Period size: 91 Copynumber: 2.0 Consensus size: 90
84750 ATATTTCAAA
* *
84760 ACTTCAACCAAAAGAAAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATATACAGTTTA
1 ACTTCAACCAAAAGAAAAAAAAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTA
*
84825 GCAGAATTGGCAGCAACCGAATAAATTT
63 GCAGAATTGGAAGCAACCGAATAAATTT
84853 ACTTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAG
1 ACTTCAACCAAAAGA-AAAA-AAAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAG
*
84917 CAGTATTGGAAGCAACCGAATAAATTT
64 CAGAATTGGAAGCAACCGAATAAATTT
84944 ACT
1 ACT
84947 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
91 41 0.47
93 15 0.17
94 4 0.05
95 28 0.32
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (90 bp):
ACTTCAACCAAAAGAAAAAAAAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
GAATTGGAAGCAACCGAATAAATTT
Found at i:85149 original size:63 final size:63
Alignment explanation
Indices: 85090--85228 Score: 154
Period size: 63 Copynumber: 2.2 Consensus size: 63
85080 CTTAGAGCGG
* *
85090 CAACCTCAC-CACGTAAAGTAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTAC
1 CAACCTC-CTCACGTAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGCAC
* * * *** * *
85153 CGATCTCCTCACGTAAGGCATTGACCTCCACACGCTATGCACCATCGTTATCGCGTAGAGTAC
1 CAACCTCCTCACGTAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGCAC
* *
85216 CGATCTCCTCACG
1 CAACCTCCTCACG
85229 CAAGGCATTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 1 0.01
63 66 0.99
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (63 bp):
CAACCTCCTCACGTAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGCAC
Found at i:85234 original size:63 final size:63
Alignment explanation
Indices: 85113--85243 Score: 244
Period size: 63 Copynumber: 2.1 Consensus size: 63
85103 TAAAGTAGAC
*
85113 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGTAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
*
85176 ACCTCCACACGCTATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
85239 ACCTC
1 ACCTC
85244 ATCACGTAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.22
Consensus pattern (63 bp):
ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
Found at i:86724 original size:20 final size:20
Alignment explanation
Indices: 86695--86766 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 20
86685 TTTTGGTCGA
86695 AATGAAAATCGCAACGAGAT
1 AATGAAAATCGCAACGAGAT
*
86715 AATGAGAATCGCAACGAG--
1 AATGAAAATCGCAACGAGAT
*
86733 -A-G--AATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAT
86748 AATGAAAATCGCAACGAGA
1 AATGAAAATCGCAACGAGA
86767 GAATCGCAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
14 11 0.25
16 2 0.05
17 2 0.05
19 12 0.27
20 17 0.39
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.11
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAT
Found at i:86737 original size:14 final size:14
Alignment explanation
Indices: 86718--86777 Score: 66
Period size: 14 Copynumber: 3.9 Consensus size: 14
86708 ACGAGATAAT
86718 GAGAATCGCAACGA
1 GAGAATCGCAACGA
86732 GAGAATCGCAACGCGAAA
1 GAGAATCGCAA--CG--A
*
86750 TGAAAATCGCAACGA
1 -GAGAATCGCAACGA
86765 GAGAATCGCAACG
1 GAGAATCGCAACG
86778 CGAAATGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 23 0.59
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.43, C:0.22, G:0.27, T:0.08
Consensus pattern (14 bp):
GAGAATCGCAACGA
Found at i:86758 original size:33 final size:33
Alignment explanation
Indices: 86701--86794 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
86691 TCGAAATGAA
* *
86701 AATCGCAACGAGATAATGAGAATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGAGAG
86735 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
86768 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
86795 TGCGATTTTG
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 46 0.79
34 12 0.21
ACGTcount: A:0.46, C:0.20, G:0.23, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:86817 original size:19 final size:19
Alignment explanation
Indices: 86795--86839 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
86785 AAAATCGCAA
*
86795 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
* *
86814 TGCGTTTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
86833 TGCGATT
1 TGCGATT
86840 CTCTCGTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.07, C:0.16, G:0.27, T:0.51
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:87420 original size:20 final size:20
Alignment explanation
Indices: 87395--87447 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
87385 GCGCTATGTA
*
87395 AATCGCTTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
87415 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
87435 TATCTCGTTGCGA
1 AATCGCGTTGCGA
87448 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:87467 original size:21 final size:22
Alignment explanation
Indices: 87442--87492 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 22
87432 CAGTATCTCG
*
87442 TTGCGATTTTGT-ATTATTGCA
1 TTGCGATTTTGTCAGTATTGCA
87463 TTGCGA--TTGTCAGTATTGCA
1 TTGCGATTTTGTCAGTATTGCA
87483 TTGCGATTTT
1 TTGCGATTTT
87493 TCCAATTCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.15
20 14 0.54
21 6 0.23
22 2 0.08
ACGTcount: A:0.18, C:0.12, G:0.22, T:0.49
Consensus pattern (22 bp):
TTGCGATTTTGTCAGTATTGCA
Found at i:87600 original size:21 final size:21
Alignment explanation
Indices: 87560--87600 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
87550 ACTGTAGACC
**
87560 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
87581 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
87601 GCGAATTTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:88867 original size:21 final size:21
Alignment explanation
Indices: 88835--88884 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
88825 AAAATCTTTG
*
88835 GATGAAATGACTTAACATTTT
1 GATGAAAAGACTTAACATTTT
* *
88856 GATTAAAAGACTTAATATTTT
1 GATGAAAAGACTTAACATTTT
88877 GATGAAAA
1 GATGAAAA
88885 AGGCTTAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (21 bp):
GATGAAAAGACTTAACATTTT
Found at i:88891 original size:22 final size:21
Alignment explanation
Indices: 88843--88893 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
88833 TGGATGAAAT
* *
88843 GACTTAACATTTTGATTAAAA
1 GACTTAATATTTTGATAAAAA
88864 GACTTAATATTTTGATGAAAAA
1 GACTTAATATTTTGAT-AAAAA
*
88886 GGCTTAAT
1 GACTTAAT
88894 CCTTTCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (21 bp):
GACTTAATATTTTGATAAAAA
Found at i:89261 original size:18 final size:19
Alignment explanation
Indices: 89211--89262 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
89201 AAGTAAATTT
89211 ATAAAATTTTAAAGAATGA
1 ATAAAATTTTAAAGAATGA
*
89230 AAATAAATTATTAATA-AA-GA
1 ATA-AAATT-TTAA-AGAATGA
89250 ATAAAATTTTAAA
1 ATAAAATTTTAAA
89263 ATATATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
17 1 0.04
18 4 0.14
19 7 0.25
20 9 0.32
21 6 0.21
22 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAAAATTTTAAAGAATGA
Found at i:90191 original size:2 final size:2
Alignment explanation
Indices: 90145--90173 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
90135 ATTTACCATA
90145 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90174 ATTTGTTGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94872 original size:26 final size:26
Alignment explanation
Indices: 94843--94897 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
94833 ACCAGCAGCC
94843 GAATATCACCAAAGTCAAAAGGAGAA
1 GAATATCACCAAAGTCAAAAGGAGAA
94869 GAATATCACCAAAGTCAAAAGGAGAA
1 GAATATCACCAAAGTCAAAAGGAGAA
94895 GAA
1 GAA
94898 GAAAAAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.55, C:0.15, G:0.20, T:0.11
Consensus pattern (26 bp):
GAATATCACCAAAGTCAAAAGGAGAA
Found at i:95752 original size:23 final size:22
Alignment explanation
Indices: 95720--95767 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
95710 ATTTCTTAAA
*
95720 TTTATTTTTTATAAATTAATAT
1 TTTATTTTTTATAAATTAACAT
* *
95742 TTTATTATTTTTTATATTAACAT
1 TTTATT-TTTTATAAATTAACAT
95765 TTT
1 TTT
95768 CTTAACTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTTTTTATAAATTAACAT
Found at i:95777 original size:25 final size:24
Alignment explanation
Indices: 95721--95767 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
95711 TTTCTTAAAT
*
95721 TTATTTTTTATAAATTAATATTTTA
1 TTATTTTTTAT-AATTAACATTTTA
95746 TTATTTTTTAT-ATTAACATTTT
1 TTATTTTTTATAATTAACATTTT
95768 CTTAACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
25 11 0.52
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (24 bp):
TTATTTTTTATAATTAACATTTTA
Found at i:97105 original size:31 final size:31
Alignment explanation
Indices: 97065--97131 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
97055 TGTAATATAA
* * *
97065 TCCCCCAACATTTAGTCTGTTTGTGATATGG
1 TCCCCCAACATTTAGTCCGTTTATAATATGG
*
97096 TCCCTCAACATTTAGTCCGTTTATAATATGG
1 TCCCCCAACATTTAGTCCGTTTATAATATGG
97127 TCCCC
1 TCCCC
97132 GACGTAACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (31 bp):
TCCCCCAACATTTAGTCCGTTTATAATATGG
Found at i:97661 original size:87 final size:88
Alignment explanation
Indices: 97509--97672 Score: 226
Period size: 87 Copynumber: 1.9 Consensus size: 88
97499 TTGTGAAGCA
* * *
97509 TTTTAACTTAAAATATTATCATATTTAATCTAAAAAATTATACAATTGGTAATAATTTTGATTAC
1 TTTTAACCTAAAATATTATCATATCTAATCTAAAAAATTATACAATTGATAATAATTTTGATTAC
97574 AA-CAAAGAATGTTACATTAGGCT
66 AACCAAA-AATGTTACATTAGGCT
* * * *
97597 TTTTAACCTAAAATGTTA-CTTATCTACTCTAAAAAGTTATACAATTGATAATAATTTTCG-TTA
1 TTTTAACCTAAAATATTATCATATCTAATCTAAAAAATTATACAATTGATAATAATTTT-GATTA
97660 CAACCAAAAATGT
65 CAACCAAAAATGT
97673 CTTGACAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
87 46 0.69
88 21 0.31
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (88 bp):
TTTTAACCTAAAATATTATCATATCTAATCTAAAAAATTATACAATTGATAATAATTTTGATTAC
AACCAAAAATGTTACATTAGGCT
Found at i:98585 original size:27 final size:27
Alignment explanation
Indices: 98533--98587 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
98523 TGCATGAGGT
*
98533 TTCTTCTTGAATTTAAAACCAATTTTA
1 TTCTTCTTGAATTTAAAAACAATTTTA
* *
98560 TTCTT-TTGAATTTTAAAAATATTTTTA
1 TTCTTCTTGAA-TTTAAAAACAATTTTA
98587 T
1 T
98588 ATATTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.55
Consensus pattern (27 bp):
TTCTTCTTGAATTTAAAAACAATTTTA
Found at i:99063 original size:31 final size:31
Alignment explanation
Indices: 99019--99116 Score: 144
Period size: 31 Copynumber: 3.2 Consensus size: 31
99009 TATAATATAA
* *
99019 TCCCCCAACATTTAGTCTATTTGTAATATGG
1 TCCCTCAACATTTAGTCTATTTGCAATATGG
* *
99050 TCCCTCAATATTTAGTCTATTTACAATATGG
1 TCCCTCAACATTTAGTCTATTTGCAATATGG
99081 TCCCTCAACATTTAGT-TCATTTGCAATATGG
1 TCCCTCAACATTTAGTCT-ATTTGCAATATGG
99112 TCCCT
1 TCCCT
99117 GACGTAATTG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
30 1 0.02
31 59 0.98
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (31 bp):
TCCCTCAACATTTAGTCTATTTGCAATATGG
Found at i:99475 original size:23 final size:23
Alignment explanation
Indices: 99428--99477 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
99418 AATAACATAT
**
99428 TAGGTAACGCTTATATAATGTAA
1 TAGGTAACGCTTATATAATAAAA
99451 TAGGTAACGCTTATATAATAAAA
1 TAGGTAACGCTTATATAATAAAA
99474 TAGG
1 TAGG
99478 CATTTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (23 bp):
TAGGTAACGCTTATATAATAAAA
Found at i:99532 original size:23 final size:23
Alignment explanation
Indices: 99506--99553 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
99496 ATCAAGTACA
99506 ATAA-CAAATTAGGTAGCGCTTAT
1 ATAATCAAA-TAGGTAGCGCTTAT
**
99529 ATAATGTAATAGGTAGCGCTTAT
1 ATAATCAAATAGGTAGCGCTTAT
99552 AT
1 AT
99554 TGACCTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAATCAAATAGGTAGCGCTTAT
Found at i:99537 original size:87 final size:87
Alignment explanation
Indices: 99391--99553 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
99381 TATGTTATAT
*
99391 CATTTAACCGGAAATATTATCAAGCACAATAACATATTAGGTAACGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGCACAATAACAAATTAGGTAACGCTTATATAATGTAATAGGT
99456 AACGCTTATATAATAAAATAGG
66 AACGCTTATATAATAAAATAGG
* *
99478 CATTTAACCGGAAATATTATCAAGTACAATAACAAATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGCACAATAACAAATTAGGTAACGCTTATATAATGTAATAGGT
*
99543 AGCGCTTATAT
66 AACGCTTATAT
99554 TGACCTATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAGCACAATAACAAATTAGGTAACGCTTATATAATGTAATAGGT
AACGCTTATATAATAAAATAGG
Found at i:99918 original size:198 final size:198
Alignment explanation
Indices: 99581--100070 Score: 566
Period size: 199 Copynumber: 2.5 Consensus size: 198
99571 AAACATGTAA
* * * * *
99581 ATTTAAACCGGTTACATTATAAATTGACCTATTACATTAT-GTATATCGGTTTCGATGTTTTTGG
1 ATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAAT-TATCGGTTTCGATGATTTTGG
* * * *
99645 GATCGATACAATTTT-AAATGTATCGACACTTTATGCGTGCAACTCGTTTGTGCTTTATTTTGGA
65 GATCGATAC-TTTTTAAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCCTTCATTTTGGA
* * * *
99709 AAAAAGTATCGACA-AATATTTAAAGAGTGTCGATACATAATGTAGACCTATT-TGTTAATTAA-
129 AAAAAGTATCGACACAA-ATTAAAAAAGTGTCGATACATAATGTAGACCTATTCT-CTAATAAAC
99771 CCGGTAT
192 CCGGTAT
* * * * *
99778 ATTTTAACCGATTACATTGTAAATTTACCTGTTACATAATAATTATCGATTTCGATG-TTTCGAG
1 ATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGATTTTG-G
*
99842 GATCGATACTTTTTACAAATGTATCGACACTTTATGCGTACACCTCGTTT-TCCATTCATTTT-G
65 GATCGATACTTTTTA-AAATGTATCGACACTTTATGCGTACAACTCGTTTGTCC-TTCATTTTGG
* * * * *
99905 AAAAAATGTATCGATACAAATTAAAAAAGTGTCGATACTTTATGTTGACCTATTCTCTCATAAAC
128 AAAAAA-GTATCGACACAAATTAAAAAAGTGTCGATACATAATGTAGACCTATTCTCTAATAAAC
99970 CCGGTAT
192 CCGGTAT
* * **
99977 ATTTCT-ACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTCTCTTTGATTTTGG
1 ATTT-TAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGATTTTGG
*
100041 GATCGATACTTGTTATAAATGTATCGACAC
65 GATCGATACTTTTTA-AAATGTATCGACAC
100071 AAAATCTAAT
Statistics
Matches: 248, Mismatches: 34, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
196 8 0.03
197 66 0.27
198 83 0.33
199 86 0.35
200 5 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (198 bp):
ATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGATTTTGGG
ATCGATACTTTTTAAAATGTATCGACACTTTATGCGTACAACTCGTTTGTCCTTCATTTTGGAAA
AAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTAGACCTATTCTCTAATAAACCCGG
TAT
Found at i:100063 original size:199 final size:194
Alignment explanation
Indices: 99548--100070 Score: 561
Period size: 198 Copynumber: 2.6 Consensus size: 194
99538 TAGGTAGCGC
* ** * * * *
99548 TTATATTGACCTATTTTCTCATAAAACATGTAAATTTAAACCGGTTACATTATAAATTGACCTAT
1 TTATGTTGACCTA-TTTCTCAT-AAACCGGTATATTT-TACCGGTTACATTGTAAATTTACCTAT
* *
99613 TACATTAT-GTATATCGGTTTCGATGTTTTTGGGATCGATACAATTT-TAAATGTATCGACACTT
63 TACATTATAAT-TATCGGTTTCGATG-TTTTGGGATCGATAC-TTTTATAAATGTATCGACACTT
* * * * *
99676 TATGCGTGCAACTCGTTTGTGCTTTATTTTGGAAAAAAGTATCGACAAATATTTAAAGAGTGTCG
125 TATGCGTACAACTCGTTTGTCCTTCATTTTGGAAAAAAGTATCGACAAATATTAAAAAAGTGTCG
99741 ATACA
190 ATACA
* * * * * * *
99746 TAATGTAGACCTATTTGTTAATTAACCGGTATATTTTAACCGATTACATTGTAAATTTACCTGTT
1 TTATGTTGACCTATTT-CTCATAAACCGGTATATTTT-ACCGGTTACATTGTAAATTTACCTATT
* * * *
99811 ACATAATAATTATCGATTTCGATGTTTCGAGGATCGATACTTTTTACAAATGTATCGACACTTTA
64 ACATTATAATTATCGGTTTCGATGTTTTG-GGATCGATAC-TTTTATAAATGTATCGACACTTTA
* *
99876 TGCGTACACCTCGTTT-TCCATTCATTTT-GAAAAAATGTATCGATACAA-ATTAAAAAAGTGTC
127 TGCGTACAACTCGTTTGTCC-TTCATTTTGGAAAAAA-GTATCGACA-AATATTAAAAAAGTGTC
*
99938 GATACT
189 GATACA
*
99944 TTATGTTGACCTATTCTCTCATAAACCCGGTATATTTCTACCGGTTACATTGGAAATTTACCTAT
1 TTATGTTGACCTATT-TCTCATAAA-CCGGTATATTT-TACCGGTTACATTGTAAATTTACCTAT
* **
100009 TACATTATAATTATCGGTCTCTTTGATTTTGGGATCGATACTTGTTATAAATGTATCGACAC
63 TACATTATAATTATCGGTTTCGATG-TTTTGGGATCGATACTT-TTATAAATGTATCGACAC
100071 AAAATCTAAT
Statistics
Matches: 268, Mismatches: 44, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
196 4 0.01
197 77 0.29
198 98 0.37
199 84 0.31
200 5 0.02
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (194 bp):
TTATGTTGACCTATTTCTCATAAACCGGTATATTTTACCGGTTACATTGTAAATTTACCTATTAC
ATTATAATTATCGGTTTCGATGTTTTGGGATCGATACTTTTATAAATGTATCGACACTTTATGCG
TACAACTCGTTTGTCCTTCATTTTGGAAAAAAGTATCGACAAATATTAAAAAAGTGTCGATACA
Found at i:103753 original size:201 final size:200
Alignment explanation
Indices: 103230--103771 Score: 718
Period size: 198 Copynumber: 2.7 Consensus size: 200
103220 GTAATTTTAA
* * *
103230 AAAGTATCGACACAAATTTAA-AACGTGTCGATACATTATGTAGACCTATTTTCTCAGAAAACCG
1 AAAGTATCGACACAAA-TGAATAAAGTGTCGATACATTATGTAGACCTATTTTCTCAGAAAACTG
103294 GTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTTT
65 GTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTTT
* * ** * **
103359 TAGGATCGACAATTTTTCTAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATTTATTAT
130 TGGGATCGACACTTGGTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTAT
103424 GGACAT
195 GGACAT
* * * * * * * * *
103430 AAAGTGTCAACACGAATGTATAAAGTATCGATACATTATGTATACCT-TTTTTTTA-ATAACTGG
1 AAAGTATCGACACAAATGAATAAAGTGTCGATACATTATGTAGACCTATTTTCTCAGAAAACTGG
* * * * * * *
103493 TATATTTAGACCGGTTACATTGTTATGTTACCTATTACATTATAATTATGTGTTTCGATGTTTTT
66 TAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTTTT
* *
103558 GGGATCGACACTTGGTATAAATGTATCGACACTTTGTTCGTGCACTTGGTTTGG-AAATACATTC
131 GGGATCGACACTTGGTATAAATGTATCGACACTTT-TTCGTGAACTT-GTTTGGAAAATACATTA
103622 TGGACA-
194 TGGACAT
*
103628 ACATGTATCGACACAAATGAATAAAGTGTCGATACA-TATTGTAGACCTATTTTCTCAGAAAACT
1 A-AAGTATCGACACAAATGAATAAAGTGTCGATACATTA-TGTAGACCTATTTTCTCAGAAAACT
* *
103692 GGTAAATTTAAACCGATTACATTGTAAAGTGACCTATTACATTATAGTTACGGGTTTCGATGTTT
64 GGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTT
103757 TTGGGATCGACACTT
129 TTGGGATCGACACTT
103772 ATTTGTGAAC
Statistics
Matches: 288, Mismatches: 47, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
198 97 0.34
199 67 0.23
200 48 0.17
201 76 0.26
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (200 bp):
AAAGTATCGACACAAATGAATAAAGTGTCGATACATTATGTAGACCTATTTTCTCAGAAAACTGG
TAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTACGGGTTTCGATGTTTTT
GGGATCGACACTTGGTATAAATGTATCGACACTTTTTCGTGAACTTGTTTGGAAAATACATTATG
GACAT
Found at i:105065 original size:12 final size:12
Alignment explanation
Indices: 105048--105082 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
105038 ACTTGTTTGG
*
105048 ATCATCATCATC
1 ATCATCTTCATC
105060 ATCATCTTCATC
1 ATCATCTTCATC
*
105072 GTCATCTTCAT
1 ATCATCTTCAT
105083 TGACCGCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.31, G:0.03, T:0.40
Consensus pattern (12 bp):
ATCATCTTCATC
Found at i:105908 original size:2 final size:2
Alignment explanation
Indices: 105901--105932 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
105891 GTCTCCGGAG
105901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105933 CCTTCCCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106257 original size:15 final size:15
Alignment explanation
Indices: 106237--106289 Score: 88
Period size: 15 Copynumber: 3.5 Consensus size: 15
106227 TGATTTCCTC
106237 AGAAGAGCTGGGTTG
1 AGAAGAGCTGGGTTG
*
106252 AGAAGAGGTGGGTTG
1 AGAAGAGCTGGGTTG
*
106267 AGAAGAGATGGGTTG
1 AGAAGAGCTGGGTTG
106282 AGAAGAGC
1 AGAAGAGC
106290 CCCGATTCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.32, C:0.04, G:0.47, T:0.17
Consensus pattern (15 bp):
AGAAGAGCTGGGTTG
Found at i:107223 original size:199 final size:198
Alignment explanation
Indices: 106711--107572 Score: 1145
Period size: 199 Copynumber: 4.4 Consensus size: 198
106701 AATTTCATTG
* * * * ** * ** **
106711 TTTTAGGATCGATACTTTTTATAAATGTATCGACACTTTTTTGTG-CACTTTTTGACCATTTACA
1 TTTTTGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGAC-CTTGGTAAGGAAAT-CA
* * * *
106775 TTCTGGACAAAAAGTATCGATACAAATTCAAAAAGTGTCGATACTTCATGTATACCTGTTTTCTC
64 TTATGGACACAAAGTATCGACACAAATTCAAAAAGTGTCGATACTTCATGTACACCTGTTTTCTC
* * * *
106840 ATAAACCAGTGTATTTAGTCTGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
129 ATAAACCGGTGTAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTC
106905 GATGT
194 GATGT
*
106910 TTTTTGGATCGATACTTTTTATAAATGTATCGACACCTTATGGTGACCTTGGTAAGGAAATCATT
1 TTTTTGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
*
106975 ATGGACACAAAGTATCGACACAAATTAAAAAAGTGTCGATACTTCATGTACACCTGTTTTCTCAT
66 ATGGACACAAAGTATCGACACAAATTCAAAAAGTGTCGATACTTCATGTACACCTGTTTTCTCAT
*
107040 AAACCGGTGTAATTAGACCGGTCAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGA
131 AAACCGGTGTAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGA
107105 TGT
196 TGT
*
107108 TTTTTGGATCGATACTTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGATATCAT
1 TTTTTGGATCGATAC-TTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCAT
* * *
107173 TTTGGACACAAAGTATCGACACAAATTCAAAAACTGTCGATACTTCATGTACACATGTTTTCTCA
65 TATGGACACAAAGTATCGACACAAATTCAAAAAGTGTCGATACTTCATGTACACCTGTTTTCTCA
107238 TAAACCGGTGTAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCG
130 TAAACCGGTGTAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCG
107303 ATGT
195 ATGT
107307 TTTTT-G---G-------------ATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
1 TTTTTGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
* * * **
107355 GTGGACACAAAGTATGAGATCGACACAAATT-AAACAAGTGTCGATACTTTATGTATAATTGTTT
66 ATGGACACAAAG--T---ATCGACACAAATTCAAA-AAGTGTCGATACTTCATGTACACCTGTTT
* *
107419 TCTCATAAACCGGTGTATTTAGACCGGGTAGATTGATAATTTACCTATTACATTATAATTATGGG
125 TCTCATAAACCGGTGTAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGG
*
107484 TCTCAATGT
190 TCTCGATGT
* **
107493 TTTTGGGATCGATACTTTTTATAAATGTATCGACACATT-TCCATG-CACTTGGTAAGGAAATCA
1 TTTTTGGATCGATACTTTTTATAAATGTATCGACACATTAT-GGTGAC-CTTGGTAAGGAAATCA
107556 TTATGGACACAAAGTAT
64 TTATGGACACAAAGTAT
107573 ACTTGGACAA
Statistics
Matches: 594, Mismatches: 42, Indels: 55
0.86 0.06 0.08
Matches are distributed among these distances:
181 51 0.09
183 1 0.00
185 3 0.01
186 112 0.19
187 1 0.00
190 1 0.00
195 1 0.00
198 145 0.24
199 229 0.39
200 1 0.00
201 1 0.00
202 2 0.00
203 46 0.08
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (198 bp):
TTTTTGGATCGATACTTTTTATAAATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATT
ATGGACACAAAGTATCGACACAAATTCAAAAAGTGTCGATACTTCATGTACACCTGTTTTCTCAT
AAACCGGTGTAATTAGACCGGTTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCGA
TGT
Found at i:107443 original size:186 final size:181
Alignment explanation
Indices: 107133--107501 Score: 580
Period size: 186 Copynumber: 2.0 Consensus size: 181
107123 TTTTTTATAA
* *
107133 ATGTATCGACACATTATGGTGACCTTGGTAAGGATATCATTTTGGACACAAAGTATCGACACAAA
1 ATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATTGTGGACACAAAGTATCGACACAAA
*
107198 TTCAAAAACTGTCGATACTTCATGTACACATGTTTTCTCATAAACCGGTGTAATTAGACCGGTTA
66 TTCAAAAACTGTCGATACTTCATGTACACATGTTTTCTCATAAACCGGTGTAATTAGACCGGGTA
* *
107263 GATTGATAATTTACCTATTACATTATAATTATGGGTCTCGATGTTTTTTGG
131 GATTGATAATTTACCTATTACATTATAATTATGGGTCTCAATGTTTTTGGG
107314 ATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATTGTGGACACAAAGTATGAGATCGAC
1 ATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATTGTGGACACAAAG--T---ATCGAC
* * * *
107379 ACAAATT-AAACAAGTGTCGATACTTTATGTATA-ATTGTTTTCTCATAAACCGGTGTATTTAGA
61 ACAAATTCAAA-AACTGTCGATACTTCATGTACACA-TGTTTTCTCATAAACCGGTGTAATTAGA
107442 CCGGGTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCAATGTTTTTGGG
124 CCGGGTAGATTGATAATTTACCTATTACATTATAATTATGGGTCTCAATGTTTTTGGG
107500 AT
1 AT
107502 CGATACTTTT
Statistics
Matches: 172, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
181 51 0.30
183 1 0.01
185 4 0.02
186 116 0.67
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (181 bp):
ATGTATCGACACATTATGGTGACCTTGGTAAGGAAATCATTGTGGACACAAAGTATCGACACAAA
TTCAAAAACTGTCGATACTTCATGTACACATGTTTTCTCATAAACCGGTGTAATTAGACCGGGTA
GATTGATAATTTACCTATTACATTATAATTATGGGTCTCAATGTTTTTGGG
Found at i:107876 original size:19 final size:19
Alignment explanation
Indices: 107848--107897 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
107838 TTACATTCAC
*
107848 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
* *
107867 ATATAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
107886 ATACAAAATTAA
1 ATACAAAATTAA
107898 CCCTACATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:109068 original size:17 final size:17
Alignment explanation
Indices: 109046--109081 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
109036 GAATCATTAG
109046 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
109063 GATTAATATCTTTTCAT
1 GATTAATATCTTTTCAT
109080 GA
1 GA
109082 AATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (17 bp):
GATTAATATCTTTTCAT
Found at i:109406 original size:18 final size:18
Alignment explanation
Indices: 109383--109421 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
109373 TTCTCTTCAT
109383 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
109401 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
109419 TTC
1 TTC
109422 AAATTTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.38, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCATCTTTTCTTC
Found at i:110122 original size:22 final size:24
Alignment explanation
Indices: 110094--110149 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
110084 AACTTGCATT
110094 TATAATAAAAT-TA-ATCATTTTA
1 TATAATAAAATATACATCATTTTA
*
110116 TATAAT-AACTATACCATCATTTTA
1 TATAATAAAATATA-CATCATTTTA
*
110140 TATAAAAAAA
1 TATAATAAAA
110150 CAAAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 3 0.11
22 8 0.30
24 14 0.52
25 2 0.07
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (24 bp):
TATAATAAAATATACATCATTTTA
Found at i:112349 original size:182 final size:181
Alignment explanation
Indices: 112036--112628 Score: 832
Period size: 182 Copynumber: 3.3 Consensus size: 181
112026 CACTTTACCG
* * * *
112036 GTTTTGTCATATTTTTACCTATTATATTATTATGGATCGATACGTTT-TCATAAAGTATCGACAC
1 GTTTTGTCATATTATTACCTGTTATATTACTATGGATCGATACATTTGT-ATAAAGTATCGACAC
* *
112100 TTTTTAGGCGCTATAATTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTATC
65 TTTTTAGACGCTATAACTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTATC
112165 GACACTTTCAATATATCCGATATCTTTTTACCGGTTTTATCATTTCGAGACAT
130 GACACTTTCAATATATCCG-TATCTTTTTACCGGTTTTATCATTTCGAGACAT
* * *
112218 ATTTTGTCATATTATTACATGTTATTTTACTATGGATCGATACATTTGTATAAAGTATCGACACT
1 GTTTTGTCATATTATTACCTGTTATATTACTATGGATCGATACATTTGTATAAAGTATCGACACT
* * *
112283 TTTTAGACGCTATTACTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATACTAATGTATCG
66 TTTTAGACGCTATAACTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTATCG
* * *
112348 ACACTTTCAATATATCATGTATCTTTTTACTGATTTTATCATTTCGAGACAT
131 ACACTTTCAATATATC-CGTATCTTTTTACCGGTTTTATCATTTCGAGACAT
* *
112400 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATTGATACATTTGTATAAAGTATCGACACT
1 GTTTTGTCATATTATTACCTGTTATATTACTATGGATCGATACATTTGTATAAAGTATCGACACT
**
112465 TTTTA-AGCGCTATAACTTCTTCTCTTTTAAATTATAAAAGTGTCGATACTTATATTAATTTATC
66 TTTTAGA-CGCTATAACTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTATC
* ** * * * * **
112529 GACACTTTCAATATATCCGGTAGCGGTTTATCAGTTTTATCATAAT-GACACCG
130 GACACTTTCAATATATCC-GTATCTTTTTACCGGTTTTATCAT-TTCGAGACAT
* * *
112582 GTTTTATCATATTTTTACCTGTTATATTGCTATGGATCGATACATTT
1 GTTTTGTCATATTATTACCTGTTATATTACTATGGATCGATACATTT
112629 TTCATTTGTA
Statistics
Matches: 366, Mismatches: 40, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
181 1 0.00
182 362 0.99
183 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (181 bp):
GTTTTGTCATATTATTACCTGTTATATTACTATGGATCGATACATTTGTATAAAGTATCGACACT
TTTTAGACGCTATAACTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTATCG
ACACTTTCAATATATCCGTATCTTTTTACCGGTTTTATCATTTCGAGACAT
Found at i:119601 original size:20 final size:20
Alignment explanation
Indices: 119576--119618 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
119566 GTTTCGTAGA
119576 ACTTTTATATTATTAGGCCC
1 ACTTTTATATTATTAGGCCC
119596 ACTTTTATATTATTAGGCCC
1 ACTTTTATATTATTAGGCCC
119616 ACT
1 ACT
119619 CCAATATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (20 bp):
ACTTTTATATTATTAGGCCC
Found at i:119625 original size:20 final size:20
Alignment explanation
Indices: 119582--119625 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
119572 TAGAACTTTT
***
119582 ATATTATTAGGCCCACTTTT
1 ATATTATTAGGCCCACTCCA
119602 ATATTATTAGGCCCACTCCA
1 ATATTATTAGGCCCACTCCA
119622 ATAT
1 ATAT
119626 GTAGTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (20 bp):
ATATTATTAGGCCCACTCCA
Found at i:119947 original size:31 final size:31
Alignment explanation
Indices: 119824--119965 Score: 106
Period size: 32 Copynumber: 4.5 Consensus size: 31
119814 AATTATTAAA
* **
119824 AATTTGATAAATTTAATAAATATTTTATAAC
1 AATTTGAGAAATTTAATAACCATTTTATAAC
* * * * *
119855 AATTCGAAAAATTTTAATAATCATCTTATAAT
1 AATTTGAGAAA-TTTAATAACCATTTTATAAC
* * * * *
119887 AATTTGATAATATATAAT-GCTTATTTTATAAT
1 AATTTGAGAA-ATTTAATAAC-CATTTTATAAC
*
119919 AATTTGAGAAATTTAATTACCATTTTATAAC
1 AATTTGAGAAATTTAATAACCATTTTATAAC
* *
119950 AGTTTGAGAAGTTTAA
1 AATTTGAGAAATTTAA
119966 CGGCACAGGC
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
31 38 0.44
32 48 0.55
33 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.44
Consensus pattern (31 bp):
AATTTGAGAAATTTAATAACCATTTTATAAC
Found at i:120466 original size:40 final size:40
Alignment explanation
Indices: 120411--120486 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
120401 GAAAAGTAGT
*
120411 TTTGCTTTGAGTAGGATCTACTGGATCTATATTTTTCTAC
1 TTTGCTTTGAGTAGGATCTACTGGATATATATTTTTCTAC
* *
120451 TTTGCTTTGAGTAGGATTTACTGGATATGTATTTTT
1 TTTGCTTTGAGTAGGATCTACTGGATATATATTTTT
120487 TCATTGTCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.50
Consensus pattern (40 bp):
TTTGCTTTGAGTAGGATCTACTGGATATATATTTTTCTAC
Found at i:120898 original size:20 final size:20
Alignment explanation
Indices: 120873--120915 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
120863 ACTAAGAGCC
*
120873 CATTTAGGATCATATAGATG
1 CATTTAGGAGCATATAGATG
*
120893 CATTTAGGAGCATATAGTTG
1 CATTTAGGAGCATATAGATG
120913 CAT
1 CAT
120916 GTGGTGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGAGCATATAGATG
Found at i:129381 original size:20 final size:20
Alignment explanation
Indices: 129356--129398 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
129346 ACTAAGAGCC
*
129356 CATTTAGGATCATATAGATG
1 CATTTAGGAGCATATAGATG
*
129376 CATTTAGGAGCATATAGTTG
1 CATTTAGGAGCATATAGATG
129396 CAT
1 CAT
129399 GTGGTGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGAGCATATAGATG
Found at i:134044 original size:13 final size:13
Alignment explanation
Indices: 134026--134052 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
134016 TTATAGACGC
134026 GCATATGAAGACT
1 GCATATGAAGACT
134039 GCATATGAAGACT
1 GCATATGAAGACT
134052 G
1 G
134053 TTCAACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Done.