genome.fa.s6559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006559.1 Hibiscus syriacus cultivar Beakdansim tig00016031_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89155

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4056--4135	24	3.4	24	77	6	83	31	22	23	22	1.99
4069--4179	46	2.4	46	82	7	127	32	24	24	18	1.97
4053--4179	23	5.5	22	76	11	85	31	24	24	19	1.98
10377--10422	2	23.0	2	100	0	92	50	0	0	50	1.00
12613--12710	38	2.6	38	96	0	178	43	18	17	20	1.88
15942--16047	2	53.5	2	73	22	82	47	3	3	45	1.39
16797--17099	2	160.5	2	65	25	110	46	4	3	45	1.39
16809--16838	13	2.3	13	94	0	51	50	0	6	43	1.28
16985--17031	15	3.0	15	85	11	67	38	8	6	46	1.60
17040--17109	22	3.2	20	74	18	61	45	5	4	44	1.47
17556--17646	43	2.1	43	93	0	155	29	9	24	36	1.88
18053--18104	20	2.6	20	100	0	104	30	23	23	23	1.99
18133--18175	20	2.2	20	91	0	68	25	16	34	23	1.95
18177--18221	20	2.2	20	80	7	56	35	15	22	26	1.94
19546--19785	19	12.8	19	66	19	94	54	4	2	39	1.31
19549--19755	31	6.3	31	68	21	93	54	4	1	39	1.33
19639--19785	2	76.5	2	68	22	84	55	3	1	40	1.25
19646--19785	33	4.5	31	77	21	125	55	3	0	40	1.22
19609--19784	76	2.3	75	78	13	182	54	3	2	39	1.30
19549--19779	5	45.6	5	68	20	90	54	4	2	38	1.32
19663--19785	33	3.9	32	77	19	127	55	3	0	40	1.22
21089--21113	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22793--22826	8	4.2	8	92	0	59	38	2	0	58	1.13
22835--22875	2	20.5	2	100	0	82	48	0	0	51	1.00
23130--23394	54	4.9	54	85	5	286	23	25	19	31	1.98
23159--23421	54	4.9	52	81	10	212	24	25	17	33	1.96
23188--23424	108	2.2	108	82	6	284	23	25	17	33	1.96
23133--23432	162	1.8	163	80	7	360	24	25	18	32	1.97
23381--23679	55	5.4	55	90	1	438	28	28	14	29	1.95
24666--24717	7	7.0	7	77	18	52	13	7	0	78	0.94
24664--24717	21	2.4	21	84	9	63	12	9	0	77	0.98
28239--28266	8	3.5	8	100	0	56	50	10	0	39	1.37
36413--36437	2	12.5	2	100	0	50	52	0	0	48	1.00
38119--38152	8	4.2	8	92	0	59	38	2	0	58	1.13
38161--38221	2	30.5	2	100	0	122	49	0	0	50	1.00
39752--39786	18	1.9	18	88	0	52	48	2	2	45	1.32
40318--40388	2	35.5	2	100	0	142	50	0	0	49	1.00
42331--42622	117	2.6	109	84	9	349	24	19	15	40	1.90
42561--43043	136	3.6	136	89	2	717	25	21	18	34	1.96
43914--43996	39	2.1	39	84	10	107	7	13	3	75	1.14
54628--54731	52	2.0	52	96	3	192	56	7	14	21	1.63
55488--55513	2	13.0	2	100	0	52	50	0	0	50	1.00
55789--55827	2	19.5	2	100	0	78	51	0	0	48	1.00
57065--57102	20	1.9	20	100	0	76	65	0	13	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58263--58335	30	2.4	30	95	0	128	30	24	20	24	1.99
58321--58385	31	2.1	31	85	0	85	33	23	18	24	1.96
58517--58552	17	2.0	19	89	10	58	38	11	5	44	1.63
59036--59186	64	2.3	65	85	6	191	28	17	19	34	1.95
62166--62210	22	2.1	21	84	8	56	28	11	2	57	1.45
69049--69606	197	3.0	179	81	8	591	32	17	15	35	1.91
69232--69731	198	2.5	197	86	2	682	31	16	16	35	1.92
69733--69802	20	3.5	20	98	0	131	17	30	22	30	1.97
69841--69880	9	4.4	9	84	9	55	80	0	12	7	0.91
69850--69880	10	3.2	10	90	9	55	80	0	9	9	0.90
69835--69892	26	2.3	26	85	8	75	74	1	12	12	1.16
69841--69880	19	2.2	18	90	4	62	80	0	12	7	0.91
72901--73814	457	2.0	457	99	0	1819	42	17	10	29	1.83
78383--78424	14	3.1	14	82	3	50	64	21	7	7	1.43
84038--84068	13	2.4	13	94	0	53	35	16	19	29	1.93
87693--87748	24	2.3	24	100	0	112	19	23	30	26	1.98

Tables:   1

The End!