Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006560.1 Hibiscus syriacus cultivar Beakdansim tig00016032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94921

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
183--249
1
67.0
1
78
0
62
2
8
0
88
0.62
182--249
30
2.3
30
92
5
113
2
10
0
86
0.67
12963--13014
3
17.3
3
95
0
86
61
0
0
38
0.96
20597--20652
28
2.0
28
100
0
112
39
17
0
42
1.50
23262--23364
37
2.8
37
81
0
116
43
12
13
30
1.81
23720--23762
18
2.5
17
85
7
61
25
4
2
67
1.22
23999--24073
22
3.4
21
77
15
64
16
2
5
76
1.09
23949--24104
26
6.2
24
70
19
72
21
5
3
69
1.26
28000--28536
183
2.9
183
95
0
968
27
21
21
30
1.98
29680--29787
36
3.0
36
70
1
99
28
17
14
38
1.90
29645--29815
72
2.3
75
83
7
199
28
18
11
41
1.86
29890--30209
107
3.1
106
89
4
467
30
20
12
36
1.89
30109--30184
36
2.1
36
90
0
116
22
21
15
40
1.90
30384--31008
105
6.0
105
87
4
844
33
26
17
22
1.96
31556--31619
21
3.3
21
62
20
57
43
15
14
26
1.85
32013--32055
18
2.5
17
85
7
61
25
4
2
67
1.22
32096--32149
22
2.5
22
74
14
58
31
3
0
64
1.11
32309--32359
25
2.2
23
82
10
59
15
3
1
78
0.99
32359--32419
18
3.2
18
72
20
52
16
13
1
68
1.28
32311--32420
19
5.9
19
67
20
54
16
9
1
72
1.18
51520--51556
16
2.3
16
100
0
74
0
13
0
86
0.57
52015--52074
17
3.6
17
72
18
56
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52003--52074
37
2.0
35
89
5
108
51
0
1
47
1.09
52192--52921
76
9.5
76
93
2
1226
35
20
20
23
1.96
53949--54067
54
2.3
52
83
4
141
25
20
13
41
1.88
64626--64681
3
18.7
3
85
10
71
60
0
1
37
1.07
64637--64748
6
20.3
6
85
14
154
54
0
0
45
0.99
64626--64743
10
13.9
8
90
9
77
55
0
0
44
1.05
64637--64748
8
15.2
8
89
10
154
54
0
0
45
0.99
64637--64748
14
8.7
14
89
10
154
54
0
0
45
0.99
69375--69412
15
2.4
16
83
16
53
23
18
0
57
1.40
69606--69630
2
12.5
2
100
0
50
48
0
0
52
1.00
73909--73942
2
17.0
2
100
0
68
50
0
0
50
1.00
74252--74338
44
2.0
44
93
0
147
39
13
2
44
1.57
75821--75866
22
2.1
21
84
4
56
43
4
4
47
1.42
75902--76354
179
2.5
180
94
1
766
26
16
13
43
1.85
76225--76686
112
4.1
112
94
0
764
25
15
14
45
1.83
76225--76686
223
2.1
224
92
0
764
25
15
14
45
1.83
76825--76849
11
2.3
11
100
0
50
24
12
20
44
1.85
77050--77191
23
6.1
23
88
3
194
25
23
4
46
1.70
77050--77191
47
3.0
47
91
1
223
25
23
4
46
1.70

Tables:   1

The End!