genome.fa.s6561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006561.1 Hibiscus syriacus cultivar Beakdansim tig00016041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109290

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4335--4390	22	2.7	21	83	10	62	30	23	17	28	1.97
5921--5964	21	2.1	21	86	0	61	9	36	15	38	1.80
6267--6303	18	2.0	19	94	5	67	13	0	27	59	1.35
6271--6314	18	2.5	18	85	3	63	18	0	27	54	1.44
6982--7107	64	2.0	65	87	4	184	31	23	16	27	1.96
10942--10973	11	2.9	11	90	0	55	75	6	9	9	1.20
18111--18179	20	3.5	20	96	4	122	27	23	21	27	1.99
18106--18217	36	3.0	37	79	7	127	29	23	23	24	1.99
18120--18214	20	4.9	20	81	10	108	28	24	22	25	1.99
21783--21859	41	1.9	38	82	7	91	19	33	25	20	1.96
22112--22159	16	3.1	16	81	3	62	25	2	4	68	1.18
27191--27255	3	21.0	3	84	6	85	38	0	0	61	0.96
28578--28610	15	2.3	15	89	5	50	42	0	0	57	0.98
31053--31106	14	3.8	14	78	4	54	24	12	9	53	1.68
34384--34414	16	2.0	15	93	6	53	83	0	16	0	0.64
36659--37003	115	3.0	115	92	0	548	32	15	21	30	1.94
39127--39332	54	3.9	54	80	10	228	38	15	22	24	1.92
39699--39753	22	2.5	22	90	0	92	34	12	14	38	1.84
40312--40356	24	1.9	23	82	13	56	53	6	24	15	1.66
40153--41850	113	15.0	113	96	1	2975	38	15	17	27	1.91
41639--41992	120	2.9	119	88	4	501	40	16	17	25	1.90
42201--42257	3	18.3	3	85	7	78	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43459--43518	15	4.1	14	75	12	50	26	1	1	70	1.07
43576--43608	15	2.3	15	89	5	50	42	0	0	57	0.98
43686--43938	137	1.9	135	82	7	305	38	9	8	43	1.67
49693--49731	16	2.4	16	86	0	60	41	33	15	10	1.81
50479--50504	2	13.0	2	100	0	52	50	0	0	50	1.00
53265--53294	2	15.0	2	100	0	60	50	0	0	50	1.00
53727--53765	2	19.5	2	100	0	78	51	0	0	48	1.00
53823--53865	18	2.5	17	85	7	61	67	2	4	25	1.22
53745--53866	60	2.1	57	83	11	149	61	1	3	33	1.22
54244--54345	34	2.9	36	88	7	163	28	13	13	44	1.82
54876--55602	105	7.0	105	92	1	1122	22	17	26	33	1.96
56245--56402	68	2.4	65	86	4	217	37	9	20	32	1.85
56232--56428	65	2.9	67	81	5	220	39	9	20	30	1.85
56378--56658	36	8.0	35	78	12	281	41	14	18	25	1.88
56326--56638	138	2.3	137	85	2	412	40	13	18	27	1.88
56414--56660	101	2.4	102	83	8	293	40	14	18	26	1.89
56520--56692	36	4.8	36	89	2	188	40	16	20	23	1.91
56520--56710	72	2.7	72	85	4	226	40	15	19	24	1.90
57136--57171	18	2.0	18	88	0	54	41	30	8	19	1.81
57585--57639	22	2.5	22	96	0	101	23	10	27	38	1.88
58262--58361	23	4.4	22	74	21	73	1	17	6	76	1.05
58272--58361	7	11.9	7	73	23	67	1	15	5	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59470--59508	8	5.0	8	84	6	53	58	12	17	10	1.61
59470--59508	15	2.5	15	87	4	51	58	12	17	10	1.61
62409--62435	14	1.9	14	100	0	54	74	3	0	22	0.98
62503--62630	49	2.5	50	75	13	111	59	1	5	33	1.30
62640--62682	18	2.5	17	81	7	52	65	4	4	25	1.32
63074--63175	34	2.9	36	86	7	154	29	13	12	44	1.81
68482--68548	21	3.3	21	66	19	61	26	50	1	20	1.57
68452--68513	27	2.3	27	88	0	88	30	51	3	14	1.58
68479--68567	39	2.3	39	94	0	151	24	51	2	21	1.59
68679--68789	36	3.1	36	98	0	213	31	47	8	12	1.70
72561--72687	46	2.8	46	90	5	190	25	6	7	59	1.49
76682--76790	29	3.8	29	95	4	195	33	21	5	39	1.76
76682--76790	57	1.9	58	94	5	195	33	21	5	39	1.76
77360--77419	28	2.0	29	87	9	86	30	31	10	28	1.89
82097--82205	57	1.9	58	90	5	177	34	21	5	38	1.76
82097--82205	29	3.8	29	90	4	168	34	21	5	38	1.76
82844--82868	6	4.2	6	100	0	50	48	0	0	52	1.00
82844--82905	19	3.4	18	78	10	63	37	0	1	61	1.06
83890--83923	16	2.1	16	94	0	59	32	8	26	32	1.87
85713--85747	13	2.7	13	95	0	61	31	22	37	8	1.85
87957--88044	36	2.5	36	85	5	108	32	9	15	42	1.79
89196--89229	7	5.0	7	85	7	52	58	0	38	2	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90405--90436	10	3.2	10	100	0	64	43	37	18	0	1.51
90765--90799	18	1.9	18	100	0	70	65	0	0	34	0.93
91041--91068	2	14.0	2	100	0	56	50	0	0	50	1.00
94145--94219	20	3.7	20	82	3	96	30	24	26	18	1.98
94137--94219	41	2.0	41	90	0	130	28	26	25	19	1.98
94240--94338	21	4.8	20	80	13	110	22	19	35	23	1.96
94418--94475	30	2.0	29	90	10	91	44	17	5	32	1.70
94418--94477	29	2.0	30	93	6	104	43	16	6	33	1.74
97002--97088	33	2.7	33	89	5	133	44	14	6	33	1.72
98278--98340	21	3.0	21	79	9	76	25	28	23	22	1.99
98361--98439	21	3.8	20	86	11	97	21	17	37	22	1.94
98519--98576	30	2.0	29	90	10	91	44	15	5	34	1.69
98519--98578	29	2.0	30	93	6	104	43	15	6	35	1.72
100191--100242	17	2.8	18	82	11	70	59	1	1	36	1.19
101000--101032	16	2.1	16	100	0	66	57	24	12	6	1.57
103095--103139	20	2.5	18	80	19	58	26	22	11	40	1.87

Tables:   1

The End!