genome.fa.s6563.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006563.1 Hibiscus syriacus cultivar Beakdansim tig00016059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114357

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7290--7453	58	2.8	59	90	6	248	31	4	4	59	1.38
7317--7407	29	3.1	29	67	10	87	34	3	5	57	1.38
7348--7436	29	3.1	29	66	6	81	26	3	4	65	1.28
7464--7525	30	2.0	31	90	3	99	58	6	6	29	1.48
8592--8655	26	2.5	25	75	9	67	42	1	3	53	1.26
8630--8689	25	2.4	25	75	5	59	48	3	1	46	1.28
8703--8756	23	2.3	24	80	3	65	48	0	5	46	1.25
9524--9562	16	2.5	15	83	4	51	15	17	15	51	1.77
9583--9675	48	2.0	46	80	4	105	18	11	24	45	1.83
9976--10019	23	1.9	23	86	9	63	40	4	0	54	1.21
9986--10091	50	2.2	48	86	6	151	42	7	0	50	1.31
16455--16552	28	3.5	28	100	0	196	19	14	6	60	1.55
18278--18316	21	1.9	20	84	5	51	20	30	5	43	1.73
20816--20910	42	2.3	42	81	7	120	24	32	17	25	1.97
20816--20910	21	4.6	20	73	13	84	24	32	17	25	1.97
22473--22518	20	2.3	20	92	0	74	15	17	23	43	1.87
22538--22576	20	2.0	20	100	0	78	20	17	20	41	1.91
22862--22897	18	2.0	18	94	0	63	19	2	22	55	1.56
24258--24307	25	2.0	25	92	0	82	44	20	8	28	1.79
24378--24456	20	4.2	20	66	18	62	35	21	21	21	1.96
24415--24463	20	2.5	20	72	0	53	28	20	26	24	1.99
24478--24526	20	2.5	20	89	0	71	16	22	18	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24811--24846	18	2.0	18	88	0	54	16	5	22	55	1.62
27113--27164	24	2.2	24	82	0	59	36	21	19	23	1.95
28123--28190	19	3.5	19	89	4	100	30	8	23	36	1.85
28178--28244	20	3.3	20	76	0	80	17	13	25	43	1.86
28171--28304	40	3.3	40	85	7	175	20	16	22	40	1.91
28295--28344	20	2.5	20	86	0	73	24	14	36	26	1.93
38889--39095	35	5.9	35	82	4	233	37	20	19	22	1.95
39163--39203	22	2.0	21	85	9	57	48	4	17	29	1.67
39098--40305	216	5.6	215	92	1	1899	34	15	18	31	1.92
39098--40305	428	2.8	428	90	1	1920	34	15	18	31	1.92
40164--40435	130	2.1	129	90	2	420	36	13	17	32	1.89
47630--47708	29	2.6	29	78	13	79	41	10	20	27	1.84
50845--50897	13	4.3	12	79	9	54	60	0	18	20	1.36
52324--52370	18	2.6	18	86	0	67	31	25	25	17	1.97
59698--59754	30	1.9	30	82	7	71	35	17	10	36	1.84
74203--74241	20	2.0	20	89	0	60	41	20	0	38	1.53
80988--81084	47	2.1	47	100	0	194	31	22	8	37	1.84
86200--86245	20	2.3	19	85	14	58	50	8	15	26	1.73
94878--95067	90	2.1	90	99	0	371	29	20	11	38	1.88
104172--104223	21	2.5	21	90	3	79	26	19	21	32	1.97
106084--106147	28	2.3	28	88	0	92	35	29	12	21	1.91
109212--109265	28	2.0	27	81	3	63	24	14	24	37	1.93

Tables:   1

The End!