genome.fa.s6566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006566.1 Hibiscus syriacus cultivar Beakdansim tig00016067_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106155

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978--1014	17	2.1	18	95	5	67	45	13	5	35	1.66
1387--1449	31	2.0	31	90	0	99	26	3	31	38	1.72
2242--2288	24	2.0	24	100	0	94	36	12	8	42	1.74
8418--8538	31	3.9	31	97	0	224	23	3	36	37	1.71
9835--9881	24	2.0	24	100	0	94	36	12	8	42	1.74
14218--14267	20	2.5	20	87	6	66	36	16	18	30	1.92
14219--14273	20	2.8	19	86	5	65	36	14	20	29	1.92
14239--14282	20	2.2	20	87	0	61	36	13	18	31	1.90
15997--16200	103	2.0	103	89	0	309	27	15	20	35	1.93
18365--18413	19	2.7	17	76	14	53	73	4	22	0	1.00
20266--20306	20	2.0	20	90	0	64	31	24	14	29	1.95
20920--20955	19	1.9	18	88	5	54	41	22	0	36	1.54
22197--22294	14	7.1	14	72	14	69	35	0	20	43	1.52
22204--22290	28	3.1	28	80	6	95	35	0	19	44	1.51
22244--22283	21	1.9	21	89	0	62	40	0	15	45	1.46
22885--22914	14	2.1	14	93	0	51	46	0	0	53	1.00
22887--22912	13	2.0	13	100	0	52	46	0	0	53	1.00
25495--25581	36	2.4	34	76	14	86	50	1	1	47	1.16
25563--25601	17	2.3	17	90	0	60	56	2	0	41	1.13
25775--25829	23	2.4	21	77	16	56	50	5	0	43	1.25
25791--25837	21	2.1	23	84	7	62	48	0	0	51	1.00
27866--27914	20	2.4	21	83	6	57	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28521--28625	37	2.8	37	80	5	115	41	15	13	29	1.85
29029--29108	2	40.5	2	92	2	135	47	0	0	52	1.00
29196--29243	21	2.3	21	85	7	62	22	8	0	68	1.16
32462--32517	20	2.7	21	83	8	69	75	7	16	1	1.11
32447--32516	20	3.3	20	82	9	68	77	5	14	2	1.07
33116--33166	22	2.3	22	96	0	93	35	27	11	25	1.91
33582--33617	18	2.0	18	88	0	54	19	8	30	41	1.81
33980--34267	65	4.1	71	73	12	227	26	19	15	38	1.92
34022--34267	36	7.0	36	78	10	249	26	19	14	39	1.90
34048--34230	101	1.8	102	87	1	278	27	18	14	39	1.89
34026--34330	138	2.2	137	87	1	439	27	20	13	38	1.90
34216--34397	67	2.7	67	82	5	201	31	22	8	37	1.85
35002--35974	105	9.3	105	90	3	1385	33	26	17	22	1.96
35002--35974	205	4.6	209	90	3	1424	33	26	17	22	1.96
35002--35974	310	3.1	310	91	2	1459	33	26	17	22	1.96
36518--36614	37	2.6	37	79	6	108	42	16	11	29	1.83
37026--37068	2	21.5	2	95	0	77	46	0	0	53	1.00
38214--38266	21	2.5	21	81	0	70	24	22	16	35	1.95
38256--38311	20	2.8	20	91	0	94	39	16	17	26	1.91
38303--38402	20	5.0	20	87	0	137	27	25	20	28	1.99
41516--41549	6	5.7	6	85	0	50	58	20	2	17	1.51
41514--41556	18	2.4	18	96	0	77	53	25	4	16	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41727--41955	20	12.4	20	71	16	172	35	22	18	23	1.95
41735--41891	54	2.9	54	92	0	251	36	23	17	22	1.95
41809--41945	34	3.9	34	78	11	139	35	22	20	21	1.96
41789--41951	74	2.2	74	87	0	236	35	22	19	22	1.96
43553--43664	42	2.7	42	76	5	111	23	16	37	22	1.94
44149--44215	20	3.5	18	80	11	71	37	23	19	19	1.94
44160--44215	20	2.8	20	86	0	76	37	21	19	21	1.94
44258--44325	20	3.4	20	89	0	100	20	20	23	35	1.96
46229--46315	20	4.4	20	84	4	106	49	21	16	12	1.78
46697--46753	22	2.6	22	85	0	87	17	19	42	21	1.90
46909--46995	20	4.3	20	92	0	120	25	20	25	28	1.99
46902--46995	40	2.3	40	87	0	143	26	21	24	27	1.99
46979--47054	20	3.8	20	98	0	143	26	21	15	36	1.93
46929--47054	40	3.2	40	85	4	139	25	19	20	34	1.96
47051--47097	22	2.2	22	84	3	60	40	19	23	17	1.91
49982--50042	25	2.4	25	88	0	95	29	3	6	60	1.38
52981--53040	2	30.0	2	100	0	120	50	0	0	50	1.00
53301--53385	10	8.9	9	76	17	57	82	0	9	8	0.85
53300--53411	14	8.1	13	78	11	80	81	0	12	6	0.87
53293--53360	10	6.5	10	81	6	64	82	0	5	11	0.83
53293--53403	19	5.7	19	77	17	77	81	0	11	7	0.88
53293--53380	22	4.1	21	80	13	90	81	0	9	9	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53358--53411	5	11.6	5	81	15	71	79	0	20	0	0.73
53348--53411	9	7.1	9	79	13	78	79	0	20	0	0.73
53348--53414	4	15.2	4	81	9	53	79	0	20	0	0.74
60964--61539	112	5.1	112	93	0	954	45	13	15	25	1.83
62036--62074	20	2.0	20	89	0	60	41	7	15	35	1.76
62041--62080	20	2.0	20	85	0	53	47	7	15	30	1.72
62433--62837	42	9.8	42	83	6	454	28	20	18	32	1.96
62432--62837	83	4.9	83	84	5	473	28	20	18	32	1.96
62433--62837	125	3.3	124	88	3	566	28	20	18	32	1.96
67475--67661	43	4.4	43	89	5	276	31	25	19	24	1.98
68691--68726	2	18.0	2	100	0	72	50	0	0	50	1.00
71514--71544	2	15.5	2	100	0	62	51	0	0	48	1.00
75527--75589	30	2.2	29	83	13	85	66	0	23	9	1.21
89767--89810	19	2.3	20	84	7	56	50	0	2	47	1.13

Tables:   1

The End!