Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006567.1 Hibiscus syriacus cultivar Beakdansim tig00016068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56094

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1064--1093
16
1.9
15
93
6
51
33
0
6
60
1.23
3152--3193
2
22.0
2
90
9
70
50
0
0
50
1.00
7214--7395
95
1.9
95
87
0
265
32
18
18
30
1.94
9336--9417
36
2.3
36
91
4
139
25
20
13
40
1.89
9366--9677
65
4.7
66
74
12
291
28
18
10
42
1.83
9643--9711
34
2.0
34
82
0
84
24
20
14
40
1.90
10276--10336
2
33.0
2
76
15
60
49
1
1
47
1.21
11928--11958
2
15.5
2
100
0
62
51
0
0
48
1.00
16535--16589
26
2.1
26
100
0
110
40
12
10
36
1.79
27544--27721
91
1.9
92
84
7
238
33
10
15
41
1.81
29114--29144
2
15.5
2
93
0
53
51
0
3
45
1.17
29689--29781
20
4.6
20
75
7
80
30
22
20
26
1.98
30366--30471
20
5.4
20
82
3
108
15
16
22
46
1.84
30435--30478
20
2.2
20
91
0
70
11
13
20
54
1.69
31981--32025
22
2.0
22
86
4
63
31
33
26
8
1.87
33515--33554
21
1.9
21
85
10
55
27
10
22
40
1.86
33426--33746
103
3.1
103
96
0
606
26
13
22
37
1.91
33756--33830
23
3.3
23
77
3
64
22
22
22
32
1.98
35727--35775
20
2.5
20
89
0
71
34
24
20
20
1.96
36392--36492
21
4.8
21
73
4
87
21
31
20
25
1.98
36392--36492
42
2.4
42
78
3
123
21
31
20
25
1.98
36392--36512
42
2.9
41
75
11
120
23
33
19
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38050--38113
20
3.2
20
88
0
101
45
20
18
15
1.86
38036--38113
40
2.0
40
87
5
113
43
23
17
15
1.87
38103--38268
20
8.6
20
78
8
157
28
19
19
32
1.96
40511--40547
14
2.6
14
91
4
56
5
21
21
51
1.68
40738--40791
24
2.2
24
90
0
81
40
20
16
22
1.91
41445--41482
17
2.2
17
100
0
76
26
5
36
31
1.79
41442--41492
17
2.6
20
76
23
63
25
7
39
27
1.83
41629--41695
20
3.3
20
73
8
64
25
17
25
31
1.97
53311--53345
17
2.0
17
88
5
52
22
5
17
54
1.64
54057--54110
11
4.9
11
75
8
56
74
1
9
14
1.15

Tables:   1

The End!