genome.fa.s6568.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006568.1 Hibiscus syriacus cultivar Beakdansim tig00016070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144477

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3044--3129	36	2.4	37	75	11	88	51	4	6	37	1.50
3161--3196	17	2.2	16	90	5	54	63	0	5	30	1.17
4470--4514	14	3.0	15	90	6	65	11	0	40	48	1.39
6848--6917	34	2.1	34	100	0	140	25	5	30	38	1.79
7943--7975	2	16.5	2	100	0	66	51	0	0	48	1.00
9127--9205	19	4.2	19	81	3	79	22	32	16	27	1.96
13365--13425	19	3.2	19	76	6	70	22	29	14	32	1.94
13430--13459	13	2.3	13	94	0	51	16	16	23	43	1.87
17729--17801	19	3.9	18	78	8	74	27	28	12	31	1.93
17729--17801	38	1.9	37	83	8	94	27	28	12	31	1.93
20996--21219	95	2.3	96	83	3	274	31	16	23	28	1.96
21678--21742	34	1.9	34	83	0	85	35	12	24	27	1.91
21623--21787	79	2.1	79	91	0	267	35	12	24	26	1.92
49020--49054	17	2.1	17	100	0	70	22	0	31	45	1.53
51602--51637	13	2.6	14	86	8	56	55	5	2	36	1.38
53051--53096	14	3.1	16	81	15	62	47	0	0	52	1.00
53072--53172	42	2.4	41	77	9	107	48	0	0	49	1.14
60421--60451	15	2.0	16	93	6	55	58	25	0	16	1.38
62000--62049	17	2.9	17	84	0	64	42	8	14	36	1.74
66685--66714	15	2.0	15	93	0	51	56	26	0	16	1.40
68264--68313	17	2.9	17	84	0	64	42	8	14	36	1.74
97984--98217	111	2.1	110	86	4	321	31	15	23	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98443--98492	16	3.1	16	97	0	91	28	20	30	22	1.98
101054--101146	21	4.5	21	78	4	100	39	18	24	17	1.91
101135--101269	20	6.7	20	78	7	112	32	24	17	25	1.97
101054--101146	41	2.3	41	100	0	186	39	18	24	17	1.91
101437--101480	22	2.0	22	95	0	79	20	45	15	18	1.85
101725--101778	20	2.7	20	88	0	81	16	18	25	38	1.92
103108--103152	18	2.5	18	88	0	72	26	44	15	13	1.83
103631--103697	20	3.4	20	81	2	73	38	23	22	14	1.92
103686--103743	14	3.9	14	81	16	71	51	22	15	10	1.73
103670--103760	32	2.8	33	89	3	148	49	20	17	12	1.78
103821--103873	20	2.7	19	85	8	70	15	26	22	35	1.93
106439--106597	64	2.5	65	84	7	191	34	18	20	26	1.96
107086--107120	18	1.9	18	88	11	54	54	5	17	22	1.64
108023--108235	103	2.1	103	94	1	374	27	14	21	36	1.92
111662--111821	64	2.5	64	86	6	209	33	17	21	26	1.96
113234--113548	149	2.1	149	93	2	535	26	17	21	33	1.96
113516--113560	23	2.0	23	86	0	63	22	24	26	26	2.00
114299--114334	14	2.6	14	90	0	54	30	0	22	47	1.52
114438--114491	14	3.5	14	77	22	63	48	20	20	11	1.80
114419--114496	33	2.4	33	91	0	120	42	21	23	12	1.87
114515--114572	20	2.9	20	97	0	107	15	22	24	37	1.93
115607--115653	24	2.0	24	91	0	76	25	19	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115835--115859	12	2.1	12	100	0	50	72	0	28	0	0.86
118134--118283	19	8.7	19	66	22	89	41	20	22	16	1.90
118154--118279	33	3.8	33	87	5	193	42	19	23	15	1.89
118155--118285	65	2.0	66	95	1	237	41	19	22	16	1.90
118289--118353	19	3.7	19	74	15	68	12	24	20	43	1.86
119852--119932	21	3.9	21	66	6	65	23	20	33	22	1.97
119837--119955	42	2.8	41	81	7	114	22	17	36	23	1.95
121982--122078	33	2.9	33	90	1	149	41	21	24	12	1.88
121957--122083	20	7.1	19	66	20	76	42	19	24	13	1.87
122654--122707	20	2.7	20	91	0	81	29	20	25	24	1.99
122716--122769	20	2.7	20	97	0	99	25	18	24	31	1.97
122651--122790	61	2.3	61	79	8	153	24	18	23	33	1.97
123564--124493	388	2.4	388	93	0	1554	34	18	19	27	1.95
128772--128797	13	2.0	13	100	0	52	46	0	23	30	1.53
128997--129069	20	3.7	20	94	0	128	10	26	20	42	1.85
129084--129150	19	3.4	19	66	11	53	22	19	17	40	1.92
129100--129194	22	4.5	22	71	7	97	21	17	23	37	1.94
129061--129163	41	2.5	41	95	1	181	23	19	19	37	1.94
129838--129871	5	6.8	5	93	0	59	2	17	58	20	1.51
129992--130085	22	4.4	22	76	8	113	38	24	18	19	1.93
130014--130104	41	2.2	41	86	5	130	39	24	18	17	1.92
130077--130128	20	2.6	20	96	0	95	40	25	25	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130117--130170	21	2.6	21	90	0	90	29	25	16	27	1.97
130617--130956	136	2.5	135	86	5	451	25	23	16	34	1.95
131936--132010	19	3.8	20	72	11	73	29	22	22	25	1.99
131925--131987	19	3.0	22	65	13	60	30	26	17	25	1.97
132140--132241	42	2.4	42	85	6	152	31	24	21	22	1.98
132290--132530	52	4.5	53	82	7	249	40	17	10	31	1.84
132284--132525	104	2.2	107	81	8	278	38	18	10	31	1.85
132527--132684	39	4.1	39	88	2	205	37	15	18	29	1.91
132546--132806	36	7.1	36	82	5	211	38	14	21	25	1.91
132952--133019	34	2.0	34	82	0	82	32	8	23	35	1.86
132961--133190	100	2.4	96	80	9	252	40	9	18	31	1.83
133057--133128	37	1.9	38	91	2	119	44	8	13	33	1.74
133001--133226	100	2.3	99	83	6	280	41	9	17	30	1.82
133163--133246	38	2.3	38	84	10	113	44	8	17	29	1.78
136793--136861	30	2.2	30	85	15	95	34	5	17	42	1.73
136802--136861	30	2.0	30	93	6	104	33	6	16	43	1.74
143310--143384	36	2.1	37	82	7	91	50	4	6	38	1.47

Tables:   1

The End!