genome.fa.s657.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000657.1 Hibiscus syriacus cultivar Beakdansim tig00001271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120917

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5042--5251	101	2.1	101	94	3	379	25	12	23	37	1.91
5268--5330	23	2.7	23	90	0	99	22	26	26	23	2.00
6247--6333	23	3.8	23	73	17	83	26	21	24	27	1.99
6246--6347	44	2.3	44	83	11	129	25	20	24	29	1.99
12808--12855	17	2.8	17	84	9	53	39	31	12	16	1.86
19378--19437	30	2.0	30	100	0	120	23	20	23	33	1.97
31708--31748	19	2.2	19	86	0	55	31	34	0	34	1.58
32090--32130	19	2.2	19	86	0	55	31	34	0	34	1.58
31684--32451	382	2.0	382	98	0	1482	26	21	15	36	1.94
34571--34664	29	3.2	29	82	8	120	40	7	19	32	1.79
41949--42005	19	3.0	19	82	10	80	19	26	29	24	1.98
41947--41998	9	5.6	9	75	8	50	17	26	30	25	1.97
42013--42045	17	1.9	17	100	0	66	18	42	24	15	1.88
42054--42162	28	3.8	29	86	6	141	33	5	22	38	1.78
44245--44315	2	36.0	2	94	2	126	47	0	0	52	1.00
44765--44791	2	13.5	2	100	0	54	48	0	0	51	1.00
45643--45830	102	1.8	102	93	0	322	27	12	19	40	1.87
47943--47980	18	2.1	19	85	5	51	65	0	2	31	1.06
48769--48798	12	2.6	11	90	10	51	70	0	0	30	0.88
49910--49934	4	6.2	4	100	0	50	76	0	0	24	0.80
50432--50642	106	2.0	107	90	2	336	20	20	26	32	1.97
50583--50774	65	2.9	65	89	2	296	20	19	26	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51715--51830	58	2.0	58	100	0	232	18	32	18	29	1.96
67954--67989	14	2.6	14	100	0	72	8	41	27	22	1.82
69531--69885	106	3.3	106	91	0	575	22	18	24	35	1.96
69794--69973	88	2.0	88	96	0	333	21	20	24	33	1.97
69830--69979	43	3.4	43	65	18	112	20	20	24	34	1.97
69690--70059	194	1.9	194	94	0	659	22	18	24	33	1.97
71501--71725	64	3.5	64	82	6	235	33	20	19	27	1.96
72477--72699	103	2.2	103	98	0	428	25	12	24	37	1.91
74340--74383	22	2.0	22	90	0	70	25	13	22	38	1.91
74987--75037	20	2.4	21	87	6	68	1	13	7	76	1.09
74998--75064	24	2.8	24	76	15	75	0	16	7	76	1.01
80324--80349	13	2.0	13	100	0	52	46	15	0	38	1.46
89365--89405	21	2.0	21	90	4	66	9	12	34	43	1.75
93851--93891	20	2.0	21	90	4	66	26	19	19	34	1.96
96654--96692	20	2.0	20	89	0	60	38	0	2	58	1.12
97749--97830	40	2.0	40	88	0	119	46	9	7	36	1.65
98115--98171	27	2.1	27	90	0	87	45	8	14	31	1.75
102404--102457	2	27.0	2	100	0	108	50	0	0	50	1.00
104026--104073	23	2.1	23	84	7	62	56	2	0	41	1.11
105255--105307	21	2.5	21	81	6	72	20	26	18	33	1.96
105297--105348	21	2.5	21	87	3	70	38	17	23	21	1.93
105282--105450	41	4.1	41	70	8	137	30	20	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105358--105430	21	3.5	21	79	3	76	23	21	17	36	1.94
106004--106047	19	2.4	19	88	3	63	47	27	15	9	1.76
106065--106153	14	5.6	14	71	23	70	10	24	23	41	1.85
106048--106177	33	3.9	33	96	1	215	10	24	22	42	1.85
106266--106320	25	2.2	24	78	15	58	20	7	20	52	1.69
107951--107986	13	2.8	13	100	0	72	0	8	13	77	0.98
107889--108079	104	1.8	105	88	6	298	20	12	17	50	1.77
108304--108396	42	2.2	42	80	0	105	23	39	13	22	1.90
109784--109814	14	2.2	14	94	0	53	32	0	25	41	1.56
109925--109989	33	2.0	32	90	3	103	47	16	21	13	1.82
109954--109997	19	2.4	19	80	3	54	47	18	15	18	1.83
109993--110077	19	4.7	19	69	15	63	14	22	21	42	1.88
111997--112050	24	2.2	24	90	0	81	40	20	16	22	1.91
112831--112882	21	2.5	21	81	3	61	40	17	21	21	1.91
112867--112958	20	4.6	20	73	2	76	39	21	18	20	1.93
113168--113231	20	3.2	20	69	8	67	40	23	20	15	1.90
113149--113251	40	2.9	34	76	17	100	40	22	21	15	1.90
113261--113332	18	4.5	15	73	20	58	13	20	20	44	1.86
113277--113322	18	2.5	19	86	10	69	15	21	19	43	1.87
113468--113494	14	1.9	14	100	0	54	37	14	0	48	1.45
115323--115374	18	2.7	20	82	11	72	36	25	23	15	1.93
115361--115472	14	6.8	17	71	23	80	47	23	17	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115361--115472	33	3.4	33	96	1	199	47	23	17	11	1.80
115378--115483	14	6.5	17	73	22	86	49	24	16	10	1.76
115361--115483	65	1.9	66	89	5	196	47	24	17	11	1.80
115479--115575	19	5.7	18	69	23	84	14	20	19	45	1.85
115506--115559	14	3.5	14	73	22	54	11	16	22	50	1.77
115484--115575	33	2.8	33	96	0	166	14	19	19	46	1.83
115560--115603	20	2.2	20	84	4	54	18	25	18	38	1.92
115569--115614	20	2.3	20	85	7	58	17	21	21	39	1.93
116095--116134	18	2.2	18	90	0	62	15	12	45	27	1.82
117426--117499	20	3.8	20	81	1	69	43	22	17	16	1.88
117724--117767	22	2.0	22	95	0	79	18	15	45	20	1.85
117955--118003	20	2.5	20	89	0	80	24	20	26	28	1.99
118016--118069	20	2.7	20	94	0	90	27	18	22	31	1.97
117935--118072	61	2.3	61	79	0	168	26	17	21	34	1.95

Tables:   1

The End!