genome.fa.s6570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006570.1 Hibiscus syriacus cultivar Beakdansim tig00016076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104380

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18018--18048	16	1.9	16	93	0	53	45	6	12	35	1.68
18519--18609	44	2.1	44	97	0	173	42	6	18	31	1.76
18762--18825	2	32.5	2	96	3	121	50	0	0	50	1.00
19913--19958	22	2.1	22	83	0	56	41	4	0	54	1.20
20934--20962	12	2.4	12	100	0	58	41	6	10	41	1.66
21278--21321	22	2.0	22	86	8	63	52	4	9	34	1.54
21747--21789	15	2.8	15	85	3	59	44	2	2	51	1.27
26197--26260	2	32.0	2	96	0	119	50	0	1	48	1.10
28397--28459	26	2.3	26	81	8	72	33	9	1	55	1.42
29828--29880	21	2.5	21	78	6	63	22	26	16	33	1.96
29870--29921	21	2.5	20	84	3	59	38	19	23	19	1.93
29907--30044	41	3.4	42	78	4	158	36	24	15	23	1.94
29911--30024	20	5.7	19	74	10	93	33	26	15	24	1.95
30212--30253	22	1.9	22	90	9	68	23	40	14	21	1.90
30517--30565	20	2.5	20	82	0	53	18	18	24	38	1.93
30533--30575	20	2.2	20	91	0	68	9	18	20	51	1.74
30712--30766	25	2.2	24	81	15	67	21	9	16	52	1.71
31896--31943	18	2.7	18	90	0	78	27	43	12	16	1.84
32081--32167	20	4.4	20	79	1	95	16	22	22	37	1.93
32102--32185	40	2.1	40	82	4	98	17	19	25	38	1.93
32542--32609	21	3.3	20	74	8	66	25	39	16	19	1.91
32532--32621	40	2.2	42	88	4	139	22	41	15	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34028--34066	14	2.8	14	84	0	51	35	0	17	46	1.49
34439--34488	20	2.5	20	80	0	73	22	18	22	38	1.94
34609--34642	12	2.9	12	86	4	52	17	41	5	35	1.74
35196--35249	24	2.2	24	86	0	72	24	16	18	40	1.90
35424--35448	12	2.1	12	100	0	50	72	0	28	0	0.86
37757--37868	19	6.4	19	69	20	82	45	17	20	16	1.85
37777--37872	33	2.9	33	93	0	165	45	17	21	14	1.84
38031--38067	14	2.6	14	91	0	65	45	24	0	29	1.53
39415--39481	21	3.2	21	68	4	55	19	20	35	23	1.95
39755--39939	91	2.0	90	88	6	273	48	16	11	23	1.79
41630--41747	20	6.6	19	70	20	94	44	20	22	12	1.85
41675--41733	14	3.9	14	76	20	64	40	23	25	10	1.86
41654--41747	33	2.8	33	93	1	152	42	22	23	11	1.86
41748--41819	33	2.2	33	87	0	99	9	20	25	44	1.82
41759--41840	33	2.5	33	82	6	103	10	21	23	43	1.84
42380--42515	21	6.6	21	69	10	75	25	19	19	36	1.95
42382--42515	41	3.3	41	69	12	121	24	20	19	35	1.95
42464--42515	20	2.5	21	87	3	70	21	23	17	38	1.93
64035--64080	22	2.1	22	84	8	58	60	0	0	39	0.97
69606--69653	20	2.4	20	82	0	60	10	29	58	2	1.43
69623--69654	17	1.9	16	93	6	55	9	31	59	0	1.29
79882--79928	20	2.2	22	81	11	62	21	6	19	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90672--90784	20	5.0	20	73	24	82	46	14	5	34	1.67
90723--90784	21	3.0	21	90	2	99	43	16	4	35	1.69
95351--95395	20	2.3	20	88	3	65	48	11	4	35	1.59
95354--95393	20	2.0	20	95	0	71	45	12	5	37	1.64
95460--95498	20	2.0	20	94	0	69	41	17	5	35	1.72
95352--95499	53	2.8	52	93	3	262	48	13	4	33	1.63
99500--99560	31	1.9	32	96	3	115	26	29	9	34	1.88
101269--101293	11	2.3	11	100	0	50	56	8	20	16	1.65

Tables:   1

The End!