genome.fa.s6571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006571.1 Hibiscus syriacus cultivar Beakdansim tig00016085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72487

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2840--2877	15	2.5	15	86	0	58	26	21	28	23	1.99
5359--5733	60	6.2	60	87	3	531	29	20	12	37	1.90
5595--5689	32	3.1	32	63	17	83	26	21	12	40	1.89
10980--11039	31	1.9	31	93	0	102	38	18	10	33	1.84
23200--23294	3	32.3	3	69	4	50	51	2	2	44	1.25
23200--23301	12	8.9	12	66	18	56	50	1	1	45	1.24
23241--23301	20	3.0	20	85	2	77	52	1	1	44	1.20
23449--23578	53	2.4	52	83	7	172	22	27	20	30	1.98
24000--24087	36	2.4	36	92	1	140	21	20	23	34	1.97
23896--24131	114	2.1	114	88	3	350	24	21	22	31	1.98
24093--24164	22	3.4	22	66	14	60	33	20	18	27	1.96
24160--24184	13	1.9	13	100	0	50	24	20	24	32	1.98
24225--24305	42	1.9	42	89	0	126	35	17	20	25	1.95
24330--24421	42	2.2	42	86	3	123	35	21	18	23	1.95
24173--24428	122	2.1	122	92	0	422	31	21	19	28	1.97
24344--24437	42	2.2	42	86	0	134	32	22	22	22	1.98
30694--30739	12	3.8	12	82	0	65	50	6	21	21	1.71
30695--30748	24	2.2	24	90	6	83	51	9	18	20	1.73
34023--34117	3	32.3	3	69	4	50	52	2	2	43	1.25
34045--34124	20	3.9	20	81	4	79	51	1	2	45	1.22
35427--35526	36	2.7	35	83	9	103	37	15	15	33	1.88
35937--36023	11	7.3	11	72	19	50	34	3	2	59	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36194--36227	16	2.1	16	88	0	50	32	5	0	61	1.20
36208--36258	21	2.4	22	80	3	59	27	3	1	66	1.20
40928--40989	21	2.9	21	80	9	72	77	6	14	1	1.04
41606--41656	22	2.3	22	93	0	84	35	25	11	27	1.91
42510--42619	37	3.0	37	86	2	150	26	22	11	39	1.89
42528--42985	102	4.5	102	94	0	781	29	20	12	37	1.89
42646--42920	37	7.9	37	66	23	159	29	20	13	37	1.90
42885--43050	65	2.6	65	95	0	296	31	19	12	36	1.89
42768--43085	167	1.9	169	92	1	532	30	20	12	37	1.89
43582--44447	98	8.4	98	79	11	725	32	24	21	21	1.98
43616--44439	424	2.0	409	83	5	1026	32	24	21	20	1.98
44908--45007	35	2.7	35	84	9	112	37	15	16	32	1.89
45676--45709	16	2.1	16	88	0	50	32	5	0	61	1.20
45690--45740	21	2.4	22	80	3	59	27	3	1	66	1.20
45729--45767	2	20.5	2	84	10	55	43	0	0	56	0.99
48303--48385	37	2.2	38	97	2	159	12	31	6	50	1.63
49515--49558	22	2.0	23	90	4	72	36	9	0	54	1.32
49820--49863	22	2.0	22	86	8	63	54	0	0	45	0.99
49824--49878	26	2.1	26	83	6	67	54	1	0	43	1.10
53056--53682	138	4.6	136	87	1	842	23	20	21	34	1.96
53056--53691	275	2.3	272	87	3	889	23	20	21	34	1.96
53835--53939	23	4.9	22	68	16	76	42	1	20	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53831--53955	63	2.0	63	95	0	223	40	1	23	34	1.64
53898--53947	23	2.2	23	82	7	57	50	2	18	30	1.58
54114--54192	19	4.3	19	77	18	69	41	5	7	45	1.54
54165--54244	34	2.4	34	85	4	110	38	5	3	52	1.41
56398--56447	23	2.1	24	85	10	68	62	2	2	34	1.18
56529--56569	20	2.0	20	85	4	55	63	9	2	24	1.37
56540--56578	20	2.0	20	90	10	62	66	7	0	25	1.18
56562--56670	31	3.6	31	79	8	82	58	0	0	40	1.04
58835--58868	16	2.1	16	88	0	50	20	20	20	38	1.94
59544--59661	13	7.9	15	73	17	77	46	5	4	43	1.47
59533--59596	18	3.3	20	75	18	73	51	4	0	43	1.22
59542--59604	18	3.4	20	83	14	82	49	4	0	46	1.23
59519--59661	41	3.3	41	71	16	110	48	4	3	42	1.41
59654--59688	18	1.9	18	94	0	61	62	5	8	22	1.45
59708--59781	15	5.3	15	72	18	52	48	2	4	44	1.35
60774--60824	2	25.5	2	82	7	59	41	1	1	54	1.22
60773--60828	14	4.1	14	80	11	71	39	1	1	57	1.20
60899--60948	20	2.5	20	90	0	82	46	0	26	28	1.53
61448--61518	14	5.7	14	68	27	61	50	4	0	45	1.21
61446--61519	24	3.1	24	98	1	141	48	4	0	47	1.20
61558--61584	13	2.1	13	100	0	54	44	0	0	55	0.99
61766--61808	16	2.7	16	88	0	68	37	13	25	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62491--62662	22	7.5	22	70	7	128	38	0	9	51	1.34
62371--62617	15	15.5	15	80	14	246	44	0	3	51	1.19
62446--62914	69	6.3	70	76	17	400	38	0	9	51	1.35
62597--63250	54	12.1	54	70	19	395	35	0	12	52	1.39
62642--62748	32	3.7	32	71	23	126	36	0	11	52	1.37
62674--62716	22	2.0	22	90	0	68	39	0	9	51	1.34
62776--62936	32	5.7	30	72	27	156	36	0	11	51	1.39
62863--62905	22	2.0	22	100	0	86	34	0	13	51	1.42
62885--63030	78	1.9	77	88	8	224	34	0	13	52	1.40
62962--63063	31	3.6	31	70	26	116	34	0	13	51	1.41
62994--63037	21	2.1	21	91	0	70	38	0	11	50	1.39
63094--63233	32	4.7	32	81	16	192	34	0	12	52	1.40
63127--63169	22	2.0	22	100	0	86	34	0	13	51	1.42
63292--63333	22	1.9	22	100	0	84	35	2	14	47	1.57
63095--63343	54	4.6	54	77	15	287	34	0	12	52	1.43

Tables:   1

The End!