genome.fa.s6574.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006574.1 Hibiscus syriacus cultivar Beakdansim tig00016107_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131530

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480--514	17	2.1	17	88	0	52	25	8	2	62	1.38
3874--3940	12	5.7	11	77	10	62	83	0	11	4	0.78
3874--3940	19	3.7	18	80	11	59	83	0	11	4	0.78
3871--3960	30	3.0	29	84	9	108	80	0	13	6	0.91
4314--4348	18	1.9	18	100	0	70	31	5	5	57	1.46
5619--6157	122	4.4	122	92	2	843	38	14	20	26	1.91
6398--6472	3	24.7	3	85	10	100	34	0	0	65	0.93
6399--6483	27	3.3	26	82	12	104	36	1	0	62	1.03
7734--7794	2	30.5	2	96	0	104	45	0	0	54	1.00
7881--7909	11	2.5	12	88	11	51	41	0	0	58	0.98
10068--10102	17	2.1	17	88	0	52	28	8	0	62	1.24
10735--10775	16	2.6	16	88	3	57	29	21	12	36	1.90
10947--11010	30	2.1	30	85	5	85	50	9	12	28	1.71
39166--39320	20	7.7	20	82	6	152	32	23	18	25	1.97
39163--39320	81	1.9	82	84	3	212	34	23	17	24	1.96
39186--39320	61	2.2	61	83	0	180	33	23	17	25	1.96
39794--39852	20	3.0	20	87	0	73	16	18	22	42	1.89
39989--40043	25	2.2	24	78	15	58	20	9	18	52	1.71
41173--41217	18	2.5	18	88	0	72	26	44	15	13	1.83
41693--41748	20	2.8	20	83	2	69	37	23	23	16	1.93
41732--41822	32	2.8	33	90	6	141	48	19	18	13	1.81
41839--41896	14	3.9	14	79	16	71	10	17	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41834--41912	32	2.4	33	93	2	133	12	18	21	46	1.82
41897--41940	20	2.2	20	88	4	63	22	25	15	36	1.94
43824--43859	14	2.6	14	90	0	54	30	0	22	47	1.52
43996--44063	19	3.8	19	83	14	92	48	17	20	13	1.80
44082--44157	20	3.8	20	72	6	73	17	19	21	42	1.90
44070--44173	40	2.9	34	76	15	109	15	22	22	40	1.91
44371--44462	20	4.6	20	72	2	67	21	18	20	39	1.93
44447--44498	20	2.5	20	81	3	59	21	21	19	38	1.94
44695--44728	12	2.9	12	86	4	52	17	41	5	35	1.74
45283--45336	24	2.2	24	90	0	81	22	16	20	40	1.91
45511--45535	12	2.1	12	100	0	50	72	0	28	0	0.86
47827--47957	19	7.7	19	65	23	85	43	19	22	14	1.87
47827--47953	33	3.8	33	87	4	193	43	19	22	14	1.88
47828--47960	66	2.0	66	95	0	239	42	19	21	16	1.89
47968--48024	14	3.7	14	72	20	51	10	24	21	43	1.83
47953--48042	33	2.7	33	92	0	144	14	22	20	43	1.87
47984--48042	19	3.4	19	71	22	65	13	22	18	45	1.84
48149--48185	14	2.6	14	82	0	56	45	21	0	32	1.52
49561--49676	21	5.5	21	66	8	56	22	21	33	22	1.97
49541--49746	42	4.9	41	73	9	164	23	18	36	21	1.95
49571--49746	84	2.1	84	100	0	352	23	17	38	21	1.93
49583--49691	21	5.2	21	61	12	53	21	18	38	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49965--50149	91	2.0	90	89	8	284	47	17	12	22	1.82
51860--51958	33	3.0	33	90	1	153	39	22	26	12	1.89
51835--51976	19	7.9	19	71	17	106	42	20	23	12	1.86
51978--52020	19	2.3	19	91	0	68	9	16	25	48	1.75
52570--52622	20	2.7	20	90	0	79	28	20	26	24	1.99
52597--52681	41	2.1	40	82	2	98	23	16	23	36	1.94
52631--52681	20	2.5	20	96	0	93	25	17	23	33	1.96
52755--52795	21	2.0	21	85	0	55	34	31	17	17	1.93
54312--54569	131	2.0	131	89	1	392	36	11	13	37	1.82
62844--63015	39	4.4	39	89	3	238	30	20	18	30	1.97
63027--63133	44	2.5	43	77	6	108	35	18	17	28	1.94
64205--64267	20	3.1	20	86	4	81	28	23	14	33	1.94
64210--64268	21	2.9	21	87	5	77	27	27	15	30	1.96
65157--65360	108	1.9	109	92	1	347	33	14	16	35	1.90
66966--67011	23	2.0	22	84	12	58	43	17	2	36	1.61
68678--68711	13	2.6	13	95	0	59	44	26	0	29	1.55
71894--71962	23	3.0	23	80	0	93	30	24	24	20	1.99
78026--78078	23	2.3	23	83	0	61	30	26	18	24	1.98
86304--86336	12	2.6	13	90	4	50	12	3	0	84	0.72
100473--100538	18	3.5	18	72	22	55	50	0	12	37	1.40
102994--103063	19	3.7	19	94	0	122	34	11	18	35	1.87
103418--103487	5	14.2	5	96	3	133	21	0	20	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103838--103877	21	1.9	21	89	0	62	27	17	17	37	1.92
103962--104007	23	2.0	23	86	4	65	15	23	26	34	1.94
104735--104775	2	20.5	2	100	0	82	51	0	0	48	1.00
104852--104886	18	1.9	18	94	0	61	60	0	8	31	1.27
115200--115252	17	3.1	17	86	5	79	45	1	7	45	1.42
115307--115371	20	3.5	19	78	20	75	40	3	9	47	1.51
115303--115377	35	2.1	35	92	0	123	42	2	8	46	1.47
115327--115355	15	1.9	15	100	0	58	44	6	6	41	1.58
117116--117160	18	2.6	16	80	16	54	20	4	4	71	1.21
127107--127135	13	2.2	13	100	0	58	79	0	13	6	0.93
128220--128288	22	3.5	20	75	22	56	46	1	7	44	1.40
128233--128264	16	1.9	17	93	6	57	46	0	3	50	1.17
128242--128293	22	2.3	22	86	3	68	50	1	3	44	1.31
128338--128402	20	3.3	20	93	2	114	43	1	9	46	1.45
129632--129666	15	2.2	16	90	5	54	14	2	0	82	0.77
130391--130523	2	67.5	2	78	14	125	44	4	2	48	1.35

Tables:   1

The End!