Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006576.1 Hibiscus syriacus cultivar Beakdansim tig00016109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104970

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11384--11574
100
1.9
99
90
1
301
27
17
27
27
1.98
12700--12739
15
2.8
14
85
7
53
17
2
17
62
1.44
16179--16587
190
2.1
192
85
2
574
44
10
6
38
1.65
21586--21946
124
2.8
127
82
8
378
41
15
9
32
1.80
22410--22449
6
6.5
6
85
2
53
77
5
2
15
1.04
23934--23978
22
2.0
22
83
8
56
4
6
40
48
1.49
24038--24070
3
11.0
3
100
0
66
66
0
0
33
0.92
24278--24534
134
1.9
132
88
3
381
31
15
22
30
1.95
25185--25249
4
15.8
4
73
9
51
67
3
6
23
1.27
26939--26971
15
2.2
15
89
10
50
78
0
0
21
0.75
27477--28358
105
8.4
105
93
0
1449
23
17
24
33
1.96
29173--29210
11
3.5
11
92
7
60
0
0
7
92
0.40
29173--29210
17
2.3
16
95
4
67
0
0
7
92
0.40
36335--36377
22
1.9
21
86
13
59
67
6
6
18
1.37
39500--39526
4
6.8
4
100
0
54
77
0
0
22
0.76
41415--41447
15
2.2
15
89
10
50
78
0
0
21
0.75
41953--42834
105
8.4
105
93
0
1440
23
17
25
33
1.96
43444--43520
4
19.0
4
75
10
68
71
1
5
22
1.13
46245--46401
11
14.6
10
67
27
58
8
17
0
73
1.12
46249--46324
19
4.2
19
80
11
88
9
11
0
78
0.95
46310--46398
18
4.9
18
70
15
58
5
21
1
71
1.12
46223--46401
19
9.1
18
68
23
71
8
17
0
72
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46281--46406
47
2.7
46
79
13
118
7
19
0
71
1.16
46347--46401
21
2.6
20
81
18
67
9
18
0
72
1.10
49928--49963
18
2.0
18
89
10
56
63
0
2
33
1.08
52288--52332
22
2.0
22
91
0
72
33
22
20
24
1.97
52290--52340
22
2.3
22
86
0
66
37
21
17
23
1.94
53268--53318
3
17.0
3
95
0
93
66
0
31
1
1.03
55511--55544
11
3.1
11
82
0
50
38
8
26
26
1.85
60544--60574
14
2.2
14
94
0
53
35
0
0
64
0.94
60550--60607
24
2.4
23
81
13
64
37
1
0
60
1.07
60725--60768
16
2.8
16
89
0
70
36
2
0
61
1.09
60719--60797
42
1.9
41
84
2
104
34
2
1
62
1.17
60729--60805
17
4.8
16
72
21
54
33
2
1
62
1.17
60719--60806
16
5.3
16
75
11
61
32
2
1
63
1.14
68337--68399
10
6.1
10
77
15
58
76
1
19
3
1.01
68343--68401
21
2.9
20
80
14
59
77
1
16
3
0.98
69426--69664
77
3.1
77
72
13
204
38
17
17
26
1.92
74478--74533
27
2.1
26
93
3
94
19
12
17
50
1.78
83676--83715
19
2.1
19
86
9
55
52
2
0
45
1.14
87897--87966
35
2.0
35
88
0
104
45
11
2
40
1.55
88490--88604
61
1.9
61
87
0
167
27
23
17
31
1.97

Tables:   1

The End!