genome.fa.s6578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006578.1 Hibiscus syriacus cultivar Beakdansim tig00016122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51274

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2787--2962	41	4.3	39	83	7	226	24	17	22	35	1.95
2832--2901	22	3.5	20	88	9	106	32	12	24	30	1.93
2893--2982	20	4.4	20	80	2	117	15	22	22	40	1.91
2788--2942	81	1.9	82	90	6	251	26	16	23	33	1.96
2851--2985	61	2.2	61	84	6	166	22	18	22	36	1.95
2974--3026	22	2.4	22	87	0	88	18	16	28	35	1.93
3128--3202	5	14.6	5	87	4	89	26	52	21	0	1.47
3129--3207	29	2.6	31	80	13	92	27	49	22	0	1.50
3133--3216	20	4.2	20	83	6	62	28	46	25	0	1.53
3830--3868	19	2.1	19	100	0	78	43	15	20	20	1.88
3901--3954	21	2.6	21	100	0	108	29	29	16	24	1.97
3878--4080	62	3.4	62	72	12	226	36	23	18	20	1.95
3970--4018	20	2.3	22	80	20	68	44	22	20	12	1.84
3977--4027	20	2.5	20	90	6	77	41	23	23	11	1.87
3881--4158	115	2.5	109	89	4	403	35	24	19	21	1.96
4016--4158	21	6.6	21	75	10	126	32	25	18	23	1.97
3996--4162	89	1.9	89	96	0	307	34	23	19	22	1.96
6690--6751	25	2.3	27	78	8	65	43	3	3	50	1.34
6724--6950	122	1.9	116	81	12	275	43	9	8	38	1.68
8808--8849	3	13.7	3	85	14	59	66	0	0	33	0.92
12106--12160	20	2.8	20	76	15	60	23	7	40	29	1.81
13423--13481	25	2.3	25	91	2	91	13	20	11	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27325--27362	2	19.0	2	100	0	76	50	0	0	50	1.00
31488--31599	24	4.7	24	93	0	179	21	21	22	34	1.97
31725--31761	18	2.0	19	94	5	67	27	21	24	27	1.99
32645--32689	21	2.0	23	87	8	67	53	2	2	42	1.25
33822--33911	20	5.0	17	84	12	67	20	27	10	42	1.84
33838--33912	20	3.9	19	93	6	118	16	28	10	45	1.80
34692--34753	21	3.0	21	92	0	97	25	20	24	29	1.99
35415--35473	6	10.5	6	98	1	90	0	16	54	28	1.43
35566--35617	21	2.5	21	87	3	70	26	28	21	23	1.99
37666--37758	41	2.3	41	79	7	100	26	16	25	31	1.96
37746--37922	39	4.4	39	87	5	237	33	16	18	31	1.93
37764--37923	81	2.0	82	90	3	254	34	16	17	31	1.92
39357--39414	24	2.4	24	100	0	116	37	15	13	32	1.87
43951--44020	21	3.3	21	92	4	97	38	20	37	4	1.72
43951--44072	21	5.8	20	83	3	82	39	18	38	4	1.69
43951--44074	42	3.0	41	80	9	108	39	17	37	4	1.71
44428--44682	43	5.9	43	77	7	185	29	23	20	26	1.99
44559--44725	86	1.9	86	81	4	203	24	24	19	31	1.98
44432--44723	43	6.7	43	76	6	171	27	23	20	28	1.99
47576--47640	33	2.0	34	81	6	80	29	12	7	50	1.67
50921--50956	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1

The End!