genome.fa.s6579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006579.1 Hibiscus syriacus cultivar Beakdansim tig00016128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129439

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2491--2562	32	2.4	31	86	6	94	40	22	12	25	1.89
2717--2775	29	2.0	29	96	0	109	27	23	18	30	1.98
6226--6299	32	2.3	32	90	2	114	40	21	13	24	1.89
6454--6512	29	2.0	29	96	0	109	27	23	18	30	1.98
7348--7386	21	2.0	21	85	10	55	46	7	5	41	1.55
9184--9219	18	1.9	18	88	5	54	75	2	0	22	0.94
9526--9591	27	2.5	27	95	4	118	48	0	0	51	1.00
11738--11775	2	19.0	2	100	0	76	50	0	0	50	1.00
12806--12839	16	2.1	16	88	0	50	58	2	0	38	1.13
13734--13835	36	2.8	36	84	4	123	25	9	39	25	1.86
13652--13816	87	1.9	85	85	6	224	24	10	38	25	1.88
13772--13891	36	3.3	36	76	9	136	25	9	40	24	1.84
13779--14156	30	11.8	31	67	16	164	22	11	37	28	1.89
13738--14316	66	8.9	65	83	10	681	21	11	37	29	1.89
13741--14343	30	18.4	35	66	21	144	21	11	37	29	1.89
13738--14313	126	4.5	128	88	6	735	21	11	37	28	1.89
15229--15270	14	3.1	14	72	6	50	71	2	2	23	1.10
15206--15272	27	2.4	28	85	5	91	65	1	4	28	1.21
15913--15976	27	2.4	27	82	10	94	39	21	9	29	1.85
18069--18126	23	2.5	23	77	2	62	15	24	8	51	1.71
21110--21181	27	2.7	27	95	0	126	37	8	25	29	1.85
26940--26996	20	2.8	20	86	0	78	26	29	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26949--27004	20	2.8	20	76	10	60	30	25	23	21	1.99
29898--29961	23	2.8	23	85	0	92	35	12	20	31	1.90
30928--30964	19	1.9	19	94	0	65	29	32	18	18	1.96
33126--33162	14	2.6	14	91	4	56	5	21	21	51	1.68
33364--33410	24	2.0	24	95	0	85	34	17	21	27	1.95
33368--33419	24	2.2	24	85	0	68	36	19	19	25	1.95
34226--34294	20	3.4	20	76	11	77	23	17	28	30	1.97
34310--34356	21	2.2	21	80	0	58	34	19	21	25	1.96
34269--34384	41	2.8	41	74	3	108	31	18	22	27	1.97
35442--35485	23	2.0	22	86	4	61	47	0	6	45	1.29
44913--44946	14	2.5	14	90	4	52	32	0	2	64	1.08
47785--47817	3	11.0	3	93	0	57	30	0	3	66	1.06
48099--48141	2	21.5	2	100	0	86	48	0	0	51	1.00
51188--51304	20	5.8	20	84	4	153	21	34	29	14	1.93
54688--54760	21	3.5	21	92	0	110	23	36	26	13	1.92
58862--58908	18	2.7	18	87	6	62	29	23	6	40	1.79
80995--81243	83	3.0	82	86	5	324	26	19	22	31	1.98
81477--81819	170	2.0	170	90	1	535	25	16	24	33	1.96
81908--81945	14	2.7	14	95	0	67	23	15	31	28	1.96
89414--89488	39	1.9	39	88	0	114	20	22	26	30	1.98
99922--99982	23	2.7	23	89	0	95	27	26	24	21	1.99
101573--101742	65	2.6	65	77	14	170	41	4	8	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104617--104647	2	15.5	2	93	0	53	48	0	0	51	1.00
104815--105003	60	3.1	59	75	11	159	34	23	5	37	1.77
105155--105254	52	1.9	52	82	8	123	36	7	22	35	1.81
106165--106245	31	2.7	31	83	7	105	19	27	16	37	1.93
107241--107287	23	2.0	23	91	0	76	65	0	6	27	1.16
107629--107671	22	2.0	21	86	4	59	34	6	2	55	1.39
108569--108600	4	8.0	4	92	0	55	25	0	3	71	1.00
115232--115305	39	2.0	36	82	12	87	43	1	4	51	1.29
115331--115388	30	1.9	30	86	6	82	44	3	0	51	1.18
115671--115711	20	2.1	19	86	4	55	56	0	0	43	0.99
115695--115753	29	2.0	29	81	12	68	40	0	1	57	1.09
124478--124531	27	2.0	27	92	0	90	27	16	9	46	1.78
126751--126809	29	2.1	28	93	3	100	62	10	0	27	1.27

Tables:   1

The End!