Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006580.1 Hibiscus syriacus cultivar Beakdansim tig00016129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96299

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2866--2906
21
2.0
21
90
9
66
17
29
31
21
1.96
3736--3780
22
2.0
23
83
8
58
20
20
28
31
1.97
7423--7479
16
3.3
16
75
17
51
64
1
21
12
1.35
7431--7478
20
2.4
20
100
0
96
64
0
20
14
1.28
8230--8272
21
2.0
22
86
4
61
23
13
27
34
1.93
9084--9112
13
2.1
14
93
6
51
51
0
13
34
1.42
31030--31069
20
2.0
20
95
0
71
45
12
5
37
1.64
31026--31154
53
2.5
51
94
3
231
48
11
6
33
1.64
31083--31122
20
2.0
21
90
5
64
45
12
5
37
1.64
35712--35751
20
2.0
20
95
0
71
45
12
5
37
1.64
35708--35836
53
2.5
52
96
3
242
48
12
6
32
1.65
35765--35804
20
2.0
21
90
5
64
45
15
5
35
1.68
44604--44633
8
3.9
8
95
4
53
0
53
23
23
1.46
49869--49918
21
2.3
23
74
19
54
42
4
0
54
1.19
51134--51173
2
20.0
2
100
0
80
50
0
0
50
1.00
51323--51368
23
2.0
23
83
8
58
10
10
4
73
1.22
62431--62476
23
2.0
23
100
0
92
21
13
39
26
1.90
62689--63241
105
5.3
105
97
0
1016
33
24
18
23
1.97
62689--63343
210
3.2
210
93
3
1115
33
24
18
23
1.97
63150--63331
90
2.0
90
96
0
337
34
25
17
22
1.95
63754--63803
21
2.3
23
74
19
54
42
4
0
54
1.19
64865--64903
3
12.3
3
89
5
51
33
0
2
64
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65024--65063
2
20.0
2
100
0
80
50
0
0
50
1.00
65214--65259
23
2.0
23
83
8
58
10
10
4
73
1.22
73561--73592
2
16.5
2
93
6
57
53
0
0
46
1.00
76309--76351
20
2.3
19
88
11
70
23
30
9
37
1.86
76314--76351
20
1.9
20
100
0
76
23
28
10
36
1.88
76839--76885
7
7.3
7
77
18
57
27
2
14
55
1.51
76837--76889
19
2.8
19
97
0
97
26
3
16
52
1.61
81537--81631
21
4.6
20
71
6
73
26
15
18
38
1.91
89233--89279
21
2.3
21
88
3
69
12
14
27
44
1.82
93488--93588
21
4.8
22
66
16
61
26
18
27
26
1.98

Tables:   1

The End!