genome.fa.s6581.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006581.1 Hibiscus syriacus cultivar Beakdansim tig00016130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69761

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15100--15139	20	2.0	20	90	0	62	20	35	25	20	1.96
15415--15487	36	2.0	36	97	0	137	30	8	13	47	1.72
15924--15962	19	2.1	19	100	0	78	25	33	0	41	1.56
23702--24122	53	7.9	53	86	2	556	20	26	21	32	1.97
23702--24122	214	2.0	212	88	1	628	20	26	21	32	1.97
24544--24727	42	4.4	42	81	2	201	34	19	19	27	1.96
24717--24741	13	1.9	13	100	0	50	24	20	24	32	1.98
24779--24876	42	2.3	42	85	0	133	33	19	17	29	1.95
38037--38163	65	2.0	65	95	0	227	33	11	29	25	1.92
40805--40879	37	2.0	37	82	10	91	50	2	1	45	1.24
49506--49559	28	2.0	28	85	3	74	75	1	5	16	1.07
49541--49603	23	2.7	22	71	9	63	68	0	7	23	1.16
49687--49727	21	1.9	22	90	5	66	70	2	0	26	0.99
50613--50678	7	8.9	7	74	9	51	77	0	4	18	0.94
50624--50674	10	5.2	10	77	13	52	72	0	5	21	1.05
50613--50681	29	2.4	28	80	9	68	76	0	4	18	0.94
50620--50681	11	5.7	11	72	9	56	75	0	4	19	0.97
50676--51098	36	11.8	35	75	13	256	46	5	4	43	1.46
50748--50848	33	2.9	33	84	10	98	50	1	3	43	1.32
50688--51098	72	5.8	70	77	14	364	46	5	4	43	1.47
50744--51111	36	10.2	35	76	16	264	45	5	4	44	1.47
51477--53137	84	19.8	84	83	2	1831	23	19	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54552--54584	14	2.4	14	94	0	57	36	3	0	60	1.12
57221--57259	20	2.0	20	89	0	60	28	10	2	58	1.44
57221--57265	20	2.2	20	84	4	54	26	11	2	60	1.42
59551--59585	16	2.1	18	89	10	56	45	0	0	54	0.99
59585--59655	2	36.0	2	80	8	74	50	1	1	46	1.18
64460--64533	21	3.6	21	70	3	78	22	16	24	36	1.94
64456--64549	41	2.3	41	92	0	161	20	17	22	40	1.91
64489--64573	20	4.2	20	78	3	98	15	16	22	45	1.84
64586--64689	19	5.3	19	79	6	127	20	19	18	42	1.90
64489--64620	61	2.2	60	81	8	151	16	17	21	44	1.86
64565--64689	41	3.1	40	82	6	146	20	19	20	40	1.91
64787--64823	6	6.2	6	100	0	74	35	48	16	0	1.46
64820--64851	5	6.6	5	96	3	57	37	21	40	0	1.54
65515--65566	20	2.6	20	100	0	104	46	23	21	9	1.80
65474--65590	61	1.9	61	91	0	189	38	22	20	18	1.93
66582--66628	21	2.2	21	96	0	85	34	31	14	19	1.92
66643--66807	21	8.0	21	67	11	90	24	18	21	35	1.95
66670--66807	42	3.3	42	89	2	199	24	18	21	36	1.95
67673--67872	19	9.8	19	76	15	168	36	25	18	20	1.95
67673--67859	42	4.5	42	89	5	258	35	25	18	20	1.95
67698--67870	19	8.4	21	79	12	173	34	26	19	20	1.96
67803--67886	40	2.2	38	86	4	114	34	25	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67882--67955	21	3.5	21	94	0	112	18	20	29	31	1.97

Tables:   1

The End!