genome.fa.s6582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006582.1 Hibiscus syriacus cultivar Beakdansim tig00016134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120232

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10956--11003	2	24.0	2	86	0	69	45	2	4	47	1.33
13734--13786	27	1.9	28	85	11	74	37	15	3	43	1.64
13655--13832	58	3.0	56	75	13	153	32	19	5	43	1.73
16343--16382	20	2.0	20	85	0	53	32	17	25	25	1.97
16463--16525	31	2.2	28	84	15	85	30	26	22	20	1.98
19776--19842	28	2.3	29	82	7	75	23	25	11	38	1.89
20097--20127	15	2.1	15	93	0	53	38	3	19	38	1.68
25179--25203	13	1.9	13	100	0	50	24	20	0	56	1.43
33381--33459	38	2.1	37	95	2	140	32	22	16	27	1.96
35625--35666	20	2.1	20	86	8	59	21	2	2	73	1.06
35729--35810	15	5.5	15	86	2	112	36	7	20	35	1.81
35721--35810	45	2.0	44	91	2	144	37	7	21	33	1.82
35729--35810	30	2.8	30	92	1	130	36	7	20	35	1.81
35793--35842	20	2.5	20	100	0	100	40	10	16	34	1.81
36042--36103	28	2.3	26	86	13	81	50	1	1	46	1.20
36041--36184	29	5.1	27	72	20	100	50	1	1	47	1.18
36040--36202	29	5.6	29	71	18	99	51	1	1	46	1.16
36125--36201	14	5.0	16	67	19	56	51	0	1	46	1.09
36158--36212	21	2.7	21	83	10	69	54	0	0	45	0.99
36401--36515	42	2.7	42	95	0	203	45	19	18	17	1.86
38650--38683	17	2.1	17	88	5	52	35	11	20	32	1.89
52495--52535	21	2.0	21	100	0	82	9	24	34	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53841--53950	58	1.9	58	85	9	154	32	23	5	38	1.78
55565--55603	17	2.4	17	95	4	71	43	0	5	51	1.24
56996--57057	23	2.7	23	80	5	72	54	12	16	16	1.71
57319--57376	29	1.9	31	89	6	93	48	0	3	48	1.18
57462--57517	17	3.5	17	78	11	64	30	1	0	67	1.01
57572--57618	2	24.0	2	95	4	87	51	0	0	48	1.00
58789--59101	155	2.0	156	99	0	619	37	7	14	39	1.75
59451--59515	26	2.5	26	80	9	69	55	4	1	38	1.30
60701--60756	22	2.8	20	84	12	78	51	0	1	46	1.11
61068--61206	41	3.3	41	67	16	120	21	20	20	37	1.95
61015--61214	87	2.3	87	92	0	319	23	20	19	38	1.94
61355--61552	40	4.9	40	83	4	148	34	22	19	23	1.96
61384--61552	20	8.4	20	87	0	248	33	23	20	22	1.97
69685--69728	23	1.9	23	90	0	70	13	20	27	38	1.90
69707--69750	18	2.5	17	82	10	52	20	20	20	38	1.94
70933--71030	32	3.1	32	75	15	105	31	17	17	33	1.93
72095--72153	29	2.0	29	93	0	100	23	15	11	49	1.77
73582--73759	64	2.8	64	82	6	193	26	17	25	29	1.97
75255--75372	44	2.7	42	79	8	128	26	18	26	28	1.98
80784--80961	64	2.8	64	82	6	193	26	17	25	29	1.97
83204--83321	63	1.9	62	84	5	157	32	17	18	31	1.95
83200--83322	31	3.9	32	73	7	108	31	17	18	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84674--84714	20	2.0	20	100	0	82	29	24	9	36	1.87
85306--85363	19	3.1	19	78	16	68	12	3	6	77	1.09
85333--85370	20	2.0	20	89	5	60	5	7	5	81	0.98
85338--85400	26	2.4	28	87	12	89	12	9	3	74	1.17
85316--85394	31	2.5	30	77	6	77	12	6	6	74	1.20
86654--86697	21	2.1	21	86	0	61	47	0	11	40	1.39
95304--95390	30	2.9	30	98	0	165	32	12	11	43	1.78
95515--95545	16	1.9	16	100	0	62	6	12	22	58	1.58
95932--96273	22	15.5	22	92	1	515	39	1	9	49	1.45
98817--98859	23	1.9	22	86	13	61	46	0	4	48	1.22
99940--99981	16	2.6	16	92	0	66	7	35	21	35	1.81
107005--107043	18	2.2	19	86	9	55	61	25	10	2	1.41
107503--107613	48	2.3	48	87	0	159	44	17	21	17	1.87
107960--108217	127	2.0	128	91	2	421	47	14	9	29	1.75
109000--109048	18	2.6	17	81	18	53	28	26	18	26	1.98
114214--114252	18	2.2	18	100	0	78	35	35	10	17	1.84
118902--119026	18	6.9	18	90	0	169	33	8	16	41	1.78
118902--119008	6	17.8	6	92	0	151	33	9	16	40	1.81

Tables:   1

The End!