genome.fa.s6584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006584.1 Hibiscus syriacus cultivar Beakdansim tig00016138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64054

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2155--2181	4	6.8	4	100	0	54	74	0	0	25	0.83
9300--9330	16	1.9	16	93	0	53	25	9	6	58	1.54
10501--10544	20	2.2	20	100	0	88	13	22	18	45	1.84
13084--13137	22	2.5	22	81	6	65	53	16	0	29	1.43
13286--13329	19	2.3	19	84	0	52	31	11	2	54	1.48
13294--13330	19	1.9	19	88	0	56	32	8	2	56	1.43
13419--13464	24	2.0	23	91	4	74	34	21	26	17	1.95
13478--13531	23	2.3	24	83	6	74	27	24	27	20	1.99
13766--13808	22	2.0	22	95	0	77	34	23	4	37	1.76
26215--26254	21	1.9	21	85	10	55	35	10	2	52	1.48
29012--29085	23	3.2	23	73	7	69	29	21	24	24	1.99
29018--29086	24	2.9	24	80	2	86	28	23	24	23	1.99
29206--29254	15	3.2	15	82	5	62	32	20	8	38	1.82
29242--29277	14	2.6	14	91	4	56	41	19	2	36	1.66
33904--33984	30	2.7	30	90	3	119	28	7	22	41	1.80
34039--34084	20	2.3	20	85	3	58	39	0	23	36	1.55
35854--35941	20	4.7	20	79	13	107	45	3	19	31	1.67
35854--35941	34	2.4	38	81	11	103	45	3	19	31	1.67
39386--39416	16	1.9	16	100	0	62	22	25	19	32	1.97
45574--45728	20	7.7	20	73	13	104	36	24	18	21	1.95
45574--45727	41	3.8	40	79	7	141	36	24	18	21	1.95
46663--46740	21	3.8	21	83	6	90	20	23	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50996--51074	5	14.8	5	73	19	54	27	0	1	70	0.95
50998--51068	3	24.7	3	74	23	64	29	0	1	69	0.98
55467--55569	25	4.2	25	72	16	81	75	6	14	2	1.12
55471--55533	34	1.9	32	90	6	99	73	7	17	1	1.16
55487--55549	17	3.8	17	74	14	51	76	6	15	1	1.07
55466--55584	30	3.8	32	76	16	90	74	7	15	2	1.14
55467--55587	43	2.7	43	80	13	131	76	6	14	2	1.10
55467--55587	44	2.8	42	79	16	122	76	6	14	2	1.10
56607--56673	33	2.0	33	94	0	116	31	16	22	29	1.96
56758--56879	63	1.9	63	80	6	140	30	9	13	46	1.75
56971--57076	36	3.0	36	84	1	115	33	22	10	33	1.88
57302--57461	28	5.5	29	67	17	100	30	13	14	42	1.83
58547--58648	44	2.3	44	88	5	143	35	19	15	29	1.93
59240--59313	18	4.0	18	81	6	85	22	17	29	29	1.97
59241--59314	38	1.9	38	86	0	103	24	17	29	28	1.97
60643--60682	19	2.0	20	85	9	55	60	2	7	30	1.38
60739--60768	3	10.0	3	92	0	51	63	0	3	33	1.11
62078--62131	3	18.0	3	85	14	60	70	0	0	29	0.88
62078--62131	11	4.8	11	78	17	58	70	0	0	29	0.88
62082--62131	19	2.7	19	87	9	68	72	0	0	28	0.86
62348--62776	113	3.6	122	79	9	396	27	19	13	39	1.89
62713--62810	40	2.5	40	100	0	196	18	24	9	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62751--63275	111	4.8	113	86	6	701	29	18	14	37	1.91
62603--62921	153	2.1	153	91	2	509	27	20	12	40	1.88
63196--63250	16	3.4	16	73	12	58	20	23	9	47	1.78
63678--63728	22	2.3	22	86	0	66	35	13	13	37	1.85

Tables:   1

The End!