Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006586.1 Hibiscus syriacus cultivar Beakdansim tig00016148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89695

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
741--779
20
1.9
21
89
5
62
41
0
2
56
1.13
12049--12126
21
3.7
21
89
0
129
26
23
25
24
2.00
12857--12891
11
3.2
11
83
0
52
28
20
25
25
1.99
12883--12926
22
2.0
21
86
4
61
18
25
31
25
1.97
14182--14222
16
2.6
16
88
3
57
29
21
12
36
1.90
15847--15890
15
2.6
17
86
10
56
34
0
2
63
1.07
18671--18716
21
2.1
22
92
4
76
21
0
34
43
1.53
18773--18813
21
2.0
21
95
0
73
21
0
34
43
1.53
18621--18841
102
2.1
103
93
3
372
30
7
23
38
1.83
19100--19381
138
2.1
136
86
3
386
41
17
11
29
1.84
27997--28081
30
2.9
30
82
10
95
43
3
17
35
1.66
30746--31123
189
2.0
188
90
3
591
45
8
3
42
1.51
36981--37039
3
20.3
3
80
13
70
64
1
0
33
1.04
37344--37470
46
2.8
46
84
4
168
43
24
13
18
1.86
37449--37565
31
3.7
31
74
7
92
35
37
11
16
1.84
38460--38497
3
12.7
3
100
0
76
31
0
0
68
0.90
39690--39736
20
2.4
19
80
16
51
25
2
14
57
1.49
42407--42472
25
2.4
28
75
17
75
25
21
22
30
1.99
42425--42482
25
2.3
25
88
5
82
25
22
20
31
1.98
50371--50400
15
2.0
15
100
0
60
60
0
20
20
1.37
50374--50408
15
2.3
15
90
0
52
65
0
17
17
1.27
50440--50549
44
2.5
44
80
10
111
73
0
9
16
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50402--50623
9
23.3
9
69
21
73
71
0
6
21
1.14
50418--50592
5
34.0
5
67
23
53
72
1
7
18
1.14
50483--50669
38
5.0
37
73
17
129
70
1
4
24
1.11
50535--50669
41
3.5
36
76
16
112
68
1
2
28
1.10
50660--50715
20
2.8
20
76
10
53
73
3
3
19
1.13
50656--50735
22
3.7
22
73
20
62
72
3
5
18
1.18
51031--51130
34
2.8
36
89
7
159
30
12
14
44
1.81
51597--52220
109
5.9
108
85
4
580
22
20
25
32
1.98
51591--52220
218
3.0
209
80
8
659
22
20
25
32
1.98
52609--52680
37
2.0
36
83
8
92
41
13
20
23
1.88
52786--52944
67
2.4
67
88
4
232
34
11
22
32
1.89
52819--53295
36
13.9
36
66
17
264
36
12
21
28
1.91
52987--53295
37
8.9
37
69
17
232
37
13
21
27
1.90
52886--53277
102
3.9
102
94
0
669
37
12
20
29
1.90
54812--54890
7
10.7
7
73
20
63
1
15
6
77
1.03
54821--54893
32
2.3
31
81
13
78
0
16
6
76
0.99
54801--54893
15
6.1
15
72
18
66
2
15
6
76
1.08
55986--56023
15
2.5
15
91
0
58
57
13
18
10
1.63
58457--58486
15
2.0
15
100
0
60
60
0
20
20
1.37
58460--58494
15
2.3
15
90
0
52
65
0
17
17
1.27
58631--58687
18
3.2
18
72
18
57
73
0
3
22
0.98
58572--58682
50
2.3
49
80
13
122
76
0
4
18
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58626--58704
36
2.2
37
93
6
135
69
0
2
27
1.01
58568--58761
78
2.5
79
79
10
184
70
1
4
24
1.14
58757--58816
22
2.8
21
74
20
54
66
5
6
21
1.34
59119--59220
34
2.9
36
85
7
145
28
15
12
43
1.84
59580--59652
31
2.4
30
80
6
94
38
10
15
35
1.82
59739--59837
28
3.4
29
79
6
92
39
9
10
41
1.70
61124--61157
6
5.7
6
100
0
68
0
17
47
35
1.48
61933--62005
36
2.0
37
86
5
105
49
4
0
46
1.21
63396--63451
26
2.2
26
96
3
105
39
14
14
32
1.86
63804--63840
18
2.0
18
89
5
56
54
5
10
29
1.57
64401--64454
27
2.0
27
85
10
74
42
0
9
48
1.35
79640--79695
2
28.5
2
89
3
87
44
0
0
55
0.99
86364--86499
27
4.7
27
75
15
105
37
6
1
54
1.36
86364--86495
57
2.3
55
80
7
149
38
6
1
53
1.37
86696--86735
17
2.2
19
86
8
57
42
22
10
25
1.84
87085--87181
21
4.6
21
75
12
83
25
16
26
30
1.97

Tables:   1

The End!