genome.fa.s6587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006587.1 Hibiscus syriacus cultivar Beakdansim tig00016150_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103995

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2705--2733	2	14.5	2	100	0	58	48	0	0	51	1.00
4154--4186	2	16.5	2	93	0	57	3	48	0	48	1.17
16217--16355	30	4.6	30	72	3	100	38	15	18	27	1.91
17078--17112	14	2.6	14	95	4	63	45	0	2	51	1.16
18151--18216	28	2.4	28	97	0	123	43	36	7	12	1.70
20560--20620	32	1.9	32	90	6	97	31	13	29	26	1.93
21009--21082	21	3.6	21	72	3	78	20	18	25	35	1.96
21005--21107	41	2.5	41	96	0	188	18	19	24	37	1.94
21030--21102	20	3.6	20	75	3	83	13	21	24	39	1.90
21256--21289	17	2.0	17	100	0	68	23	23	23	29	1.99
23335--23368	16	2.0	18	88	11	54	38	14	0	47	1.45
23713--23788	37	2.1	37	82	5	91	32	42	9	15	1.79
25972--26129	78	2.0	78	100	0	316	44	19	16	18	1.86
28880--28912	17	2.0	16	94	5	57	42	15	0	42	1.46
30833--31195	125	3.0	122	82	6	380	41	20	14	23	1.89
30865--31198	120	2.7	124	82	6	376	42	20	13	23	1.87
32976--33015	21	1.9	21	89	0	62	40	30	2	27	1.70
34732--34804	4	19.5	4	86	10	75	58	0	41	0	0.98
34734--34810	15	5.2	15	81	7	86	61	0	38	0	0.96
34719--34810	11	8.5	11	80	11	102	60	0	39	0	0.97
37289--37363	35	2.1	35	90	0	114	32	29	29	9	1.88
37424--37534	24	4.7	24	82	1	82	42	18	11	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37441--37530	23	3.8	23	83	4	117	38	18	14	27	1.90
38595--38630	18	2.0	18	88	0	54	30	16	0	52	1.44
39926--39956	7	4.4	7	91	0	53	29	29	29	12	1.94
39948--40017	18	4.2	18	77	17	87	14	18	48	18	1.81
39952--40012	31	2.0	31	93	0	104	16	18	47	18	1.83
44366--44666	156	1.9	159	89	4	468	51	4	14	28	1.63
45178--45235	24	2.4	24	85	5	73	58	15	12	13	1.63
45887--45973	31	2.8	31	89	0	129	29	17	24	28	1.97
46601--46651	20	2.5	21	77	22	56	41	0	3	54	1.19
47681--47710	16	1.9	16	93	6	53	80	0	6	13	0.91
47812--47849	8	5.0	8	87	9	53	52	7	0	39	1.31
53834--54401	106	5.4	105	95	1	983	32	26	18	22	1.97
53834--54401	211	2.7	211	94	1	985	32	26	18	22	1.97
56502--56539	8	5.0	8	87	9	53	39	0	7	52	1.31
56633--56664	16	2.1	16	94	5	57	15	6	0	78	0.95
56574--56660	45	2.0	44	82	8	106	25	5	2	66	1.25
58450--58482	16	2.1	17	83	16	52	54	3	0	42	1.15
58599--58695	31	3.2	28	81	9	113	43	0	6	50	1.27
58721--58790	9	7.2	10	72	20	51	34	2	1	61	1.20
58745--58798	3	17.7	3	77	11	56	31	5	0	62	1.18
58742--58791	16	3.2	16	77	8	59	32	4	0	64	1.12
59050--59079	16	1.9	15	93	6	51	20	40	26	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60313--60375	26	2.4	26	76	10	65	11	7	3	77	1.08
60393--60430	9	4.2	9	83	10	51	28	2	0	68	1.03
64319--65010	165	4.2	161	85	5	746	29	25	21	23	1.99
64319--64934	246	2.5	246	88	3	873	29	25	21	23	1.99
64341--65010	246	2.7	243	85	4	871	29	25	21	22	1.99
65569--65818	38	6.6	35	69	23	159	48	3	4	44	1.37
65660--65818	37	4.3	35	79	14	167	50	2	4	42	1.35
65784--65892	30	3.5	31	78	13	127	44	0	6	49	1.28
65931--65987	3	18.7	3	78	10	62	31	5	0	63	1.17
65928--65988	19	3.3	19	79	9	72	31	4	0	63	1.15
65925--65989	12	5.6	11	73	14	51	30	4	0	64	1.14
66237--66266	16	1.9	15	93	6	51	20	40	26	13	1.89
67501--67563	26	2.4	26	76	10	65	11	7	3	77	1.08
67581--67618	9	4.2	9	83	10	51	28	2	0	68	1.03
77315--77349	16	2.1	17	89	5	54	51	0	5	42	1.25
78002--78077	36	2.1	36	85	7	100	47	1	3	47	1.29
78223--78260	20	1.9	20	88	0	58	21	26	10	42	1.85
82637--82687	21	2.5	19	74	20	50	58	0	0	41	0.98
83467--83531	33	2.0	33	96	0	121	50	21	18	9	1.74
83467--83525	14	3.9	14	73	26	57	49	23	16	10	1.77
83556--83596	14	2.9	14	85	0	55	7	17	26	48	1.73
83942--83987	22	2.1	22	83	0	56	21	10	43	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84105--84142	20	2.0	20	84	5	51	44	7	15	31	1.75
84192--84239	20	2.4	20	75	0	51	37	16	18	27	1.92
84221--84302	41	2.0	42	85	7	114	25	14	30	29	1.95
84221--84302	21	4.0	21	85	6	114	25	14	30	29	1.95
84282--84323	20	2.1	20	90	0	66	30	9	30	28	1.89
87394--87418	8	3.1	8	100	0	50	36	0	0	64	0.94
88116--88156	21	1.9	22	90	5	66	34	7	39	19	1.80
88584--88954	122	3.0	121	81	8	460	47	4	10	37	1.57
88588--88960	126	3.0	122	78	9	414	47	4	10	38	1.57
90875--91019	23	6.3	23	77	5	125	34	22	23	19	1.96
90888--91011	45	2.7	46	81	5	144	33	24	22	19	1.97
94010--94067	16	3.8	16	68	21	52	63	3	1	31	1.21
98841--98939	49	2.0	50	94	2	173	48	5	9	37	1.57
103534--103581	21	2.3	21	77	0	51	37	25	20	16	1.93
103363--103610	92	2.7	92	87	1	327	35	22	16	25	1.94

Tables:   1

The End!