genome.fa.s6588.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006588.1 Hibiscus syriacus cultivar Beakdansim tig00016153_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150208

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5263--5506	57	4.3	57	94	1	411	34	9	19	36	1.83
5527--5617	27	3.4	27	64	17	71	36	13	20	29	1.91
5501--5684	54	3.4	54	91	2	271	35	11	21	30	1.90
6830--6870	20	2.0	20	90	0	64	41	19	9	29	1.83
7926--7964	18	2.2	18	95	0	69	43	10	7	38	1.67
13658--13780	39	3.2	39	83	1	149	28	38	13	20	1.90
21267--21299	2	17.0	2	93	6	59	51	0	0	48	1.00
25135--25203	14	4.9	14	85	7	95	27	21	28	21	1.99
25135--25206	29	2.5	29	93	6	121	27	22	29	20	1.99
26496--26529	13	2.6	13	90	0	59	17	47	20	14	1.83
26474--26543	18	4.2	18	77	17	87	17	48	20	14	1.81
26478--26558	31	2.5	31	88	4	117	16	44	22	17	1.86
26514--26565	8	6.5	8	79	16	63	15	38	25	21	1.92
26535--26566	7	4.4	7	92	7	55	12	34	28	25	1.92
26532--26565	15	2.3	15	100	0	68	14	35	26	23	1.94
29028--29136	24	4.5	24	73	4	85	21	14	15	48	1.80
31286--31319	13	2.6	13	90	0	59	17	47	20	14	1.83
31264--31333	18	4.2	18	77	17	87	17	48	20	14	1.81
31268--31348	31	2.5	31	88	4	117	16	44	22	17	1.86
31304--31355	8	6.5	8	79	16	63	15	38	25	21	1.92
31325--31356	7	4.4	7	92	7	55	12	34	28	25	1.92
31322--31355	15	2.3	15	100	0	68	14	35	26	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33813--33921	24	4.5	24	73	4	85	21	14	15	48	1.80
38727--38779	15	3.6	15	89	2	72	18	24	32	24	1.97
38741--38800	29	2.0	30	83	3	77	20	26	33	20	1.97
38792--38832	18	2.2	19	86	4	57	24	26	39	9	1.86
49261--49326	35	2.0	32	93	0	87	33	28	27	10	1.90
49415--49529	24	4.8	24	91	4	178	40	20	16	23	1.91
49391--49546	48	3.2	49	81	3	165	44	19	12	23	1.85
49391--49546	72	2.2	72	80	4	190	44	19	12	23	1.85
54202--54316	24	4.8	24	91	4	169	38	20	17	24	1.93
54178--54333	48	3.2	48	82	1	161	42	19	13	23	1.87
54178--54333	72	2.2	72	80	4	190	42	19	13	23	1.87
57660--57702	22	2.0	22	86	9	61	55	4	2	37	1.33
57791--57837	18	2.7	18	77	6	53	59	4	0	36	1.17
57786--57835	23	2.3	20	80	16	55	60	2	0	38	1.09
58996--59055	30	2.0	31	83	3	77	26	8	10	55	1.61
59884--59934	20	2.6	20	90	3	77	35	15	5	43	1.71
62741--62793	20	2.7	20	93	0	88	18	18	30	32	1.96
63589--63631	21	2.0	21	86	0	59	37	18	16	27	1.92
76326--76356	2	15.5	2	100	0	62	48	0	0	51	1.00
83090--83234	61	2.3	62	83	8	177	28	16	26	27	1.97
89335--89388	20	2.7	20	88	5	83	25	18	24	31	1.97
89621--89665	3	15.0	3	100	0	90	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91720--92082	130	2.8	131	86	5	511	33	11	16	38	1.84
103093--103267	90	2.0	89	90	1	278	37	11	6	45	1.66
103232--103311	20	3.9	20	69	23	58	47	3	5	43	1.43
104381--104425	22	2.0	22	83	8	56	77	0	15	6	0.96
105148--105396	133	1.9	134	88	2	385	30	22	17	29	1.97
105599--105780	3	60.7	3	100	0	364	33	0	0	66	0.92
107145--107182	17	2.1	18	90	9	60	68	0	0	31	0.90
107318--107381	33	1.9	33	96	0	119	23	18	9	48	1.77
111442--111762	170	1.9	170	89	0	498	41	11	10	36	1.77
122848--122886	18	2.2	18	90	0	60	28	0	10	61	1.28
128990--129056	21	3.2	20	81	8	64	22	20	22	34	1.97
133019--133047	14	2.0	15	93	6	51	75	3	0	20	0.94
133339--133498	81	2.0	81	85	7	218	35	15	13	35	1.86
135347--135393	22	2.1	22	84	0	58	55	25	10	8	1.62
136015--136059	17	2.6	18	74	22	51	40	0	4	55	1.20
147381--147485	36	2.9	36	92	1	183	47	18	18	16	1.83
148891--148935	17	2.6	18	74	22	51	40	0	4	55	1.20

Tables:   1

The End!