Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006589.1 Hibiscus syriacus cultivar Beakdansim tig00016154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92490

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204--876
197
3.4
198
87
4
968
38
15
16
30
1.89
914--1073
85
1.9
85
90
5
261
33
13
10
41
1.79
995--1039
23
2.0
23
95
0
81
37
20
8
33
1.83
8573--8621
17
2.8
17
90
3
80
48
10
4
36
1.56
13010--13053
21
2.2
19
88
8
61
2
18
0
79
0.83
24434--24510
31
2.5
31
80
2
91
27
27
27
18
1.98
30284--30326
20
2.2
19
87
4
59
4
20
0
74
1.00
30289--30331
16
2.6
16
79
13
52
4
23
0
72
1.04
30289--30336
17
2.9
15
79
14
51
6
22
0
70
1.09
31377--31461
31
2.8
30
79
11
95
37
7
11
43
1.69
31396--31461
31
2.2
31
88
2
107
37
9
10
42
1.71
35831--35901
32
2.2
32
97
2
135
33
14
18
33
1.90
44492--44578
24
3.6
24
81
6
104
24
10
12
52
1.70
60878--61476
299
2.0
299
97
0
1135
31
12
20
35
1.91
61875--61923
20
2.5
20
96
0
89
32
10
18
38
1.84
63547--63584
2
19.5
2
94
5
69
52
0
0
47
1.00
64351--64380
4
7.5
4
100
0
60
0
50
0
50
1.00
66238--66282
20
2.3
20
88
3
65
48
11
4
35
1.59
66241--66280
20
2.0
20
95
0
71
45
12
5
37
1.64
66294--66333
20
2.0
21
90
5
64
45
15
5
35
1.68
66239--66386
53
2.8
52
94
3
262
47
13
6
32
1.67
66347--66385
20
2.0
20
89
0
60
41
17
7
33
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70953--70997
20
2.3
20
88
3
65
48
11
4
35
1.59
70956--70995
20
2.0
20
95
0
71
45
12
5
37
1.64
71009--71048
20
2.0
21
90
5
64
45
15
5
35
1.68
70954--71101
53
2.8
52
94
3
262
47
13
6
32
1.67
71062--71100
20
2.0
20
89
0
60
41
17
7
33
1.79
80149--80198
18
2.8
18
93
3
84
32
24
20
24
1.98
80286--80675
185
2.1
185
91
2
633
44
7
4
43
1.53
82599--82625
2
13.5
2
100
0
54
48
0
0
51
1.00
87815--87879
31
2.1
31
88
0
94
21
18
23
36
1.95
87865--87936
29
2.4
30
86
2
92
16
19
30
33
1.94
88199--88309
4
27.8
4
100
0
222
25
0
24
50
1.50
90755--90893
63
2.2
61
80
9
147
32
17
23
26
1.97
91806--91877
29
2.4
30
88
2
101
18
16
29
36
1.93

Tables:   1

The End!