Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006590.1 Hibiscus syriacus cultivar Beakdansim tig00016160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52118

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3496--3619
46
2.8
45
86
8
173
39
8
21
29
1.84
6286--6389
17
5.8
17
74
24
74
74
0
18
6
1.10
6286--6392
34
2.9
36
77
17
89
73
0
17
7
1.11
6302--6344
22
2.0
22
90
9
70
74
2
18
4
1.10
10256--10380
47
2.8
45
85
7
164
40
8
20
30
1.83
14224--14311
29
3.0
29
84
0
113
22
38
23
14
1.92
14320--14358
18
2.1
19
95
4
71
0
56
17
25
1.41
14478--14544
33
2.0
33
100
0
134
31
11
29
26
1.92
14590--14647
26
2.3
26
87
3
82
50
8
34
6
1.60
15136--15182
16
3.0
16
84
9
53
29
0
10
59
1.31
15157--15187
15
2.1
14
94
5
53
38
0
6
54
1.26
17402--17443
14
3.2
14
77
19
54
45
16
0
38
1.48
17406--17453
25
2.1
22
85
14
62
50
12
0
37
1.41
17415--17501
22
3.8
22
69
18
61
51
9
0
39
1.34
17415--17526
48
2.3
49
90
3
172
49
9
0
41
1.36
17693--17719
10
2.7
10
100
0
54
40
18
0
40
1.51
17411--18075
239
2.8
238
95
2
1172
46
12
0
40
1.42
17464--18075
299
2.1
299
95
0
1102
46
12
0
40
1.42
17528--17977
21
22.5
20
63
21
92
46
13
0
40
1.43
17947--18039
21
4.6
21
66
21
63
48
11
0
39
1.40
17464--18075
60
10.2
60
95
0
1104
46
12
0
40
1.42
18149--18196
14
3.6
14
81
16
66
47
16
0
35
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18148--18196
25
2.0
25
95
0
89
46
16
0
36
1.47
18148--18206
25
2.6
22
86
10
75
49
13
0
37
1.43
18148--18217
21
3.1
22
80
12
63
50
11
0
38
1.39
18164--18342
49
3.2
59
78
15
218
47
12
0
40
1.41
18217--18243
10
2.7
10
100
0
54
40
18
0
40
1.51
21841--21902
28
2.1
30
94
5
110
56
12
0
30
1.37
22329--22418
45
2.0
45
91
0
144
26
16
33
23
1.96
22400--22441
22
1.9
22
95
0
75
21
14
38
26
1.91
22476--22559
29
2.9
29
94
0
141
15
22
38
23
1.92
22569--22602
16
2.1
16
100
0
68
5
11
55
26
1.58
26727--26898
91
1.9
92
91
2
285
44
6
12
37
1.68
27363--27402
20
2.0
21
95
5
73
25
20
22
32
1.98
34695--34826
47
2.9
45
84
7
169
38
7
21
32
1.81
37487--37592
17
5.9
17
74
24
78
73
0
17
7
1.11
37487--37563
40
1.9
39
82
12
95
75
1
16
6
1.08
37503--37545
22
2.0
22
90
9
70
74
2
18
4
1.10
41448--41572
47
2.8
45
85
7
164
40
8
20
30
1.83
45402--45488
29
3.0
29
83
1
104
22
39
22
14
1.91
45497--45535
18
2.1
19
95
4
71
0
56
17
25
1.41
45655--45720
33
2.0
32
97
2
123
31
12
28
27
1.92
45766--45815
26
1.9
26
91
0
82
50
8
34
8
1.61
46020--46143
39
3.1
38
69
20
99
38
0
12
47
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46316--46348
15
2.2
15
94
0
57
36
0
6
57
1.23
48560--48601
14
3.2
14
77
19
54
45
16
0
38
1.48
48564--48611
25
2.1
22
85
14
62
50
12
0
37
1.41
48573--48659
22
3.8
22
69
18
61
51
9
0
39
1.34
48725--48805
11
7.4
11
73
19
55
45
16
0
38
1.47
48779--48863
10
7.9
10
70
25
50
42
15
0
42
1.46
48622--49217
291
2.1
287
90
6
943
45
13
0
40
1.43
49016--49102
11
7.6
11
71
15
52
43
14
0
41
1.46
48796--49120
21
16.5
20
63
23
68
45
12
0
41
1.42
49140--49178
14
2.5
16
80
20
55
48
10
0
41
1.37
49049--49193
21
7.3
21
60
25
55
45
11
0
42
1.40
48622--49217
60
10.2
60
91
5
960
45
13
0
40
1.43
49291--49338
14
3.6
14
81
16
66
47
16
0
35
1.47
49310--49469
49
3.3
49
92
2
261
47
11
0
41
1.39

Tables:   1

The End!