genome.fa.s6594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006594.1 Hibiscus syriacus cultivar Beakdansim tig00016174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98896

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161--510	130	2.6	132	79	5	325	23	18	32	25	1.97
518--908	63	6.2	60	78	11	317	41	14	17	26	1.88
518--909	124	3.1	124	80	12	385	41	15	17	26	1.88
6899--7123	30	7.4	30	71	10	163	56	9	15	18	1.66
6899--7130	61	3.9	61	78	11	214	56	9	15	18	1.66
8430--8502	3	24.0	3	71	18	53	67	2	1	28	1.13
11842--11874	17	1.9	17	88	11	50	66	0	0	33	0.92
12954--13006	19	2.7	19	82	11	54	52	1	3	41	1.30
14475--14843	41	9.0	42	78	8	307	29	20	16	33	1.94
14456--14843	82	4.7	82	77	3	354	29	20	16	33	1.94
14465--14830	123	3.0	122	82	4	371	29	19	16	33	1.94
27463--27496	16	2.1	16	100	0	68	26	11	41	20	1.87
30942--31021	26	3.1	26	85	0	115	36	30	11	22	1.89
31022--31079	30	1.9	30	92	0	98	27	20	15	36	1.93
34571--34672	42	2.5	41	77	6	107	30	21	22	25	1.99
34411--35304	215	4.2	215	92	2	1458	31	19	15	32	1.94
35342--35494	37	4.1	38	87	6	199	18	16	20	43	1.88
37525--37567	2	21.5	2	100	0	86	51	48	0	0	1.00
48872--48922	23	2.3	22	80	6	59	17	33	11	37	1.86
49201--49410	110	1.9	110	83	3	271	31	16	15	36	1.90
52092--52250	15	11.3	14	76	14	125	48	5	3	43	1.40
52084--52225	55	2.5	57	77	16	150	49	4	2	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52084--52174	2	46.5	2	71	20	68	50	3	1	45	1.25
52382--52443	19	3.3	18	77	8	61	48	0	25	25	1.52
52565--52669	11	10.2	11	68	20	50	44	2	6	45	1.44
52719--52792	7	10.6	7	76	0	58	44	31	1	22	1.61
52719--52757	14	2.7	15	88	11	64	51	28	2	17	1.59
52832--52940	2	53.5	2	81	3	119	44	2	5	47	1.40
59098--59137	21	1.9	21	89	0	62	25	40	25	10	1.86
61372--61589	110	2.0	110	100	0	436	43	5	16	34	1.71
62668--62733	2	32.5	2	81	3	69	43	4	6	45	1.49
62804--62878	7	10.7	7	76	0	51	46	32	0	21	1.51
63242--63278	15	2.4	15	90	4	56	48	8	2	40	1.47
63367--63456	3	30.3	3	84	6	121	38	1	0	60	1.04
63857--63900	17	2.5	17	92	3	70	52	6	34	6	1.55
65255--65293	14	2.8	14	96	0	69	46	0	7	46	1.31
66246--66322	7	11.3	7	77	5	68	46	35	0	18	1.49
66435--66573	4	34.8	4	98	0	269	25	0	24	50	1.50
66683--66734	23	2.3	23	83	3	61	30	3	17	48	1.65
66659--66736	34	2.2	35	82	8	88	32	3	17	46	1.67
67034--67094	24	2.5	24	97	0	113	27	47	4	19	1.70
68169--68289	22	5.6	20	81	14	118	54	2	7	35	1.42
68172--68309	35	4.1	35	76	16	164	54	2	7	35	1.42
68200--68339	73	1.9	73	83	11	180	52	2	6	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68309--68366	13	4.5	13	70	23	50	46	3	0	50	1.18
68306--68376	21	3.6	21	71	19	71	43	2	0	53	1.15
71006--71044	15	2.6	15	92	8	62	30	0	0	69	0.89
77829--77868	15	2.7	15	96	0	71	42	17	17	22	1.89
77844--78246	74	5.9	66	77	8	236	37	13	21	27	1.91
77977--78901	39	24.4	37	79	10	325	36	14	18	30	1.91
78068--78131	22	3.2	22	67	28	70	34	10	25	29	1.90
77977--78901	78	12.2	73	77	11	387	36	14	18	30	1.91
78222--79345	39	29.0	39	78	8	875	36	15	17	30	1.91
78893--78995	21	5.0	21	70	15	90	38	17	22	21	1.93
78857--79034	60	3.0	60	96	1	322	37	17	20	24	1.94
78774--79074	99	3.1	98	77	8	358	36	17	19	25	1.94
79087--79306	76	2.9	78	78	7	198	40	15	15	29	1.88
79213--79347	38	3.5	38	78	4	153	35	15	18	30	1.92
79293--79529	75	3.2	75	82	6	275	40	13	15	31	1.86
78978--79567	264	2.2	264	79	9	625	39	15	15	30	1.88
81628--81691	5	12.8	5	76	12	60	4	18	53	23	1.64
81621--81663	22	2.0	22	100	0	86	11	23	46	18	1.82
81649--81691	14	3.1	14	96	0	77	0	18	55	25	1.42
95664--95760	46	2.1	46	90	3	151	20	15	42	21	1.89

Tables:   1

The End!