genome.fa.s6595.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006595.1 Hibiscus syriacus cultivar Beakdansim tig00016179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55463

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9101--9139	18	2.2	18	85	0	51	10	0	10	79	0.94
12247--12286	16	2.3	19	87	12	59	27	0	2	70	1.01
13399--13431	16	2.1	16	88	5	50	27	3	0	69	1.03
14916--14974	23	2.6	23	91	0	91	23	18	20	37	1.94
16175--16368	42	4.5	42	75	14	178	46	27	0	25	1.53
16173--16297	28	4.5	27	71	14	76	46	28	0	24	1.53
16222--16328	21	5.2	20	69	25	55	43	29	0	26	1.55
16231--16325	21	4.6	20	69	20	61	46	29	0	24	1.53
16217--16339	21	5.8	19	69	22	54	45	27	0	26	1.54
16432--16475	19	2.3	19	96	0	79	40	2	0	56	1.11
16774--16814	14	3.1	14	76	20	52	41	0	4	53	1.22
16942--16972	16	1.9	16	100	0	62	29	19	12	38	1.89
28730--29203	182	2.6	182	88	0	689	43	13	16	27	1.85
29124--29170	20	2.4	19	82	10	67	53	10	17	19	1.72
29133--29175	20	2.3	19	88	11	63	51	11	16	20	1.75
31379--32275	182	4.9	182	93	1	1559	41	13	17	27	1.87
32104--32436	162	2.1	162	93	1	569	42	11	17	29	1.84
34198--34260	22	2.8	22	81	13	58	46	1	0	52	1.10
34246--34292	14	3.3	14	82	14	60	38	2	0	59	1.09
34350--34483	60	2.2	59	84	3	169	34	24	4	36	1.76
34884--34957	36	2.1	37	82	10	91	45	0	1	52	1.09
36522--36578	29	1.9	28	82	10	69	45	1	3	49	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36717--37132	36	12.0	35	77	15	323	48	3	5	42	1.43
36816--36878	25	2.5	25	89	0	99	49	4	4	41	1.45
36749--37052	98	3.1	97	84	7	328	49	3	5	41	1.44
36866--36925	11	5.2	11	72	18	50	48	5	6	40	1.51
36779--36911	61	2.2	62	91	1	223	48	5	5	40	1.48
36716--36980	134	2.0	132	86	5	374	49	4	5	40	1.46
36997--37120	34	3.7	32	80	8	140	45	0	6	46	1.34
37111--37154	12	3.7	12	82	11	54	45	6	9	38	1.63
38394--38424	15	2.1	15	93	0	53	29	9	0	61	1.28
38422--38566	8	17.6	8	66	14	55	20	4	0	74	1.04
38424--38564	5	26.8	5	69	22	69	20	4	0	73	1.06
38461--38497	13	2.8	13	88	11	58	13	5	0	81	0.86
38465--38563	13	7.2	13	73	20	69	20	5	1	73	1.07
38424--38564	11	13.4	10	68	24	69	20	4	0	73	1.06
38512--38582	34	2.1	33	82	17	85	19	1	2	76	0.99
39631--39668	16	2.3	16	83	16	51	7	13	2	76	1.11
44390--44881	83	5.8	84	88	1	637	34	21	17	25	1.96
44390--44881	167	2.9	166	86	3	628	34	21	17	25	1.96
45548--45631	34	2.5	33	83	12	102	45	4	5	44	1.49
45560--45631	34	2.1	35	92	2	119	45	5	5	43	1.50
45582--45688	53	2.0	53	94	3	189	50	5	3	40	1.44
45643--45723	38	2.1	39	86	8	114	51	2	3	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45638--45830	34	5.6	33	76	12	167	46	2	5	45	1.40
45677--45830	66	2.3	67	85	6	197	44	1	6	48	1.37
47015--47045	15	2.1	15	93	0	53	29	9	0	61	1.28
47073--47103	13	2.5	13	94	5	55	6	12	0	80	0.89
47225--47267	19	2.3	19	84	8	52	41	6	4	46	1.51
51908--51950	22	2.0	22	85	0	59	34	11	25	27	1.91

Tables:   1

The End!