genome.fa.s6596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006596.1 Hibiscus syriacus cultivar Beakdansim tig00016180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60896

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6179--6230	21	2.6	20	87	6	79	21	23	28	26	1.99
6179--6228	19	2.5	19	90	6	73	20	24	30	26	1.98
18133--18303	17	9.8	17	70	10	87	36	11	7	45	1.67
18158--18284	35	3.7	35	88	5	168	40	9	7	42	1.66
18323--18412	29	3.0	30	80	6	94	43	6	15	34	1.73
18878--18912	11	3.3	10	88	11	52	57	8	8	25	1.57
22206--22262	28	2.1	28	84	15	75	33	5	10	50	1.59
22897--22936	2	20.0	2	100	0	80	50	0	0	50	1.00
23160--23303	17	8.5	17	69	15	102	32	12	11	43	1.78
26816--26861	18	2.6	18	96	0	83	28	15	21	34	1.94
27371--27531	81	2.0	81	87	2	234	35	11	21	31	1.90
27373--27560	81	2.3	81	80	3	209	36	10	21	30	1.88
27555--27867	46	6.8	46	89	0	439	45	9	21	24	1.81
27549--27852	137	2.2	138	89	0	457	44	9	21	25	1.82
32661--33024	182	2.0	182	93	0	629	33	8	18	39	1.80
32994--33175	78	2.3	79	83	6	208	41	10	19	28	1.85
33129--33170	22	1.9	22	90	0	66	38	7	26	28	1.82
33165--33313	46	3.2	46	89	3	219	42	12	21	23	1.86
34016--34066	22	2.3	22	89	0	84	41	9	23	25	1.85
34517--34572	30	1.9	30	85	7	80	33	8	23	33	1.86
35652--35783	45	2.9	45	95	0	228	38	6	22	31	1.81
36200--36240	21	2.0	21	90	0	64	34	17	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36553--36667	46	2.5	46	88	0	167	40	8	23	26	1.83
36553--36682	46	2.8	44	81	9	152	42	9	22	26	1.83
39041--39115	20	3.7	20	75	10	71	26	21	26	25	1.99
39319--39529	34	6.0	36	80	5	252	22	18	21	38	1.93
39319--39529	70	3.0	70	90	0	323	22	18	21	38	1.93
40846--41201	125	3.0	117	83	9	459	24	27	17	30	1.97
47647--47677	16	1.9	16	93	0	53	16	6	0	77	0.97
48807--48849	22	2.0	22	85	0	59	27	25	11	34	1.91
53478--53520	19	2.3	19	84	8	52	46	4	6	41	1.51
54898--55091	34	5.5	33	75	14	149	46	5	2	45	1.38
54973--55054	37	2.2	38	82	6	103	50	4	0	45	1.23
54898--55098	32	5.7	36	77	14	195	45	5	2	46	1.39
54898--55101	38	5.7	34	74	12	137	45	5	2	46	1.40
55045--55157	56	2.0	56	94	3	201	39	3	5	51	1.42
55101--55184	37	2.2	38	93	2	143	42	4	4	47	1.45
55860--56349	167	2.9	167	86	4	635	25	18	21	34	1.96
55860--56349	83	5.8	84	88	2	628	25	18	21	34	1.96

Tables:   1

The End!