genome.fa.s6597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006597.1 Hibiscus syriacus cultivar Beakdansim tig00016184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103888

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11204--11281	31	2.5	31	78	13	88	20	10	15	53	1.70
12600--12705	31	3.5	31	92	1	160	52	17	11	17	1.73
16050--16111	28	2.3	28	86	5	83	32	1	6	59	1.32
21569--21609	18	2.3	18	95	0	73	19	14	31	34	1.92
22814--22856	18	2.5	17	85	7	61	25	4	2	67	1.22
25961--25999	8	5.0	8	87	6	62	10	15	12	61	1.56
27181--27231	9	5.3	9	83	6	57	84	5	9	0	0.78
27179--27231	20	2.8	17	74	20	52	81	7	11	0	0.88
27181--27229	11	4.5	11	87	12	66	83	6	10	0	0.80
27835--27878	22	2.0	22	91	8	72	38	22	11	27	1.88
28838--28958	36	3.3	36	88	2	188	26	19	12	41	1.87
28772--29169	138	2.9	138	83	2	485	29	18	12	38	1.88
28977--29100	36	3.4	36	85	3	169	25	20	14	39	1.90
29058--29232	65	2.6	65	84	4	224	33	21	9	36	1.85
29733--30182	105	4.3	105	90	2	642	33	26	17	22	1.96
31339--31376	17	2.2	17	86	9	51	26	5	2	65	1.27
33295--33335	18	2.3	18	91	4	66	63	2	4	29	1.28
34118--34160	17	2.5	17	80	0	59	60	2	0	37	1.10
38878--38902	13	1.9	13	100	0	50	48	0	0	52	1.00
39218--39252	2	17.5	2	100	0	70	51	0	0	48	1.00
43542--43579	2	19.0	2	100	0	76	50	0	0	50	1.00
45075--45220	60	2.4	61	76	5	145	35	19	3	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49540--49628	32	2.8	31	80	10	108	35	5	10	48	1.61
53989--54031	18	2.4	18	100	0	86	20	18	11	48	1.79
54313--54473	60	2.7	61	80	8	152	40	4	24	30	1.76
56997--57092	43	2.3	43	83	5	126	31	20	14	33	1.93
57648--57698	21	2.4	21	96	0	93	31	17	11	39	1.86
60752--61069	42	7.7	42	79	9	305	32	16	20	30	1.95
60752--61069	83	3.8	81	79	8	293	32	16	20	30	1.95
60752--61007	122	2.1	124	83	5	322	33	15	21	29	1.94
60752--61066	122	2.6	122	81	5	314	32	16	20	30	1.94
62679--63027	168	2.1	168	96	0	644	33	10	18	38	1.84
63612--63803	64	3.2	63	66	18	181	40	11	19	28	1.87
63675--63908	53	4.2	53	70	15	168	41	11	20	26	1.86
69966--70001	2	18.5	2	94	5	65	50	0	0	50	1.00
71800--71838	17	2.4	17	95	4	71	43	0	5	51	1.24
73646--73695	24	2.1	24	85	7	66	28	2	12	58	1.45
76961--77004	15	3.0	15	83	12	56	15	0	6	77	0.97
89075--89111	20	1.9	19	89	10	58	45	10	24	18	1.81
93654--93700	20	2.3	21	85	10	71	53	0	19	27	1.45
103693--103877	81	2.4	77	81	13	215	28	24	10	35	1.89

Tables:   1

The End!