genome.fa.s6598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006598.1 Hibiscus syriacus cultivar Beakdansim tig00016186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63052

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982--1151	48	3.3	49	85	11	220	41	0	12	45	1.41
1075--1101	10	2.7	10	100	0	54	40	0	18	40	1.51
982--1095	24	4.8	24	68	15	76	41	0	13	45	1.43
1121--1168	25	2.0	24	91	4	78	37	0	16	45	1.48
1121--1166	13	3.6	13	80	16	60	36	0	17	45	1.49
1352--1438	11	7.6	11	72	11	52	41	0	14	43	1.46
1352--1439	21	4.4	19	66	17	54	42	0	14	43	1.46
1240--1874	58	11.3	59	83	14	821	40	0	13	46	1.43
979--1874	282	3.2	279	83	12	1015	40	1	13	45	1.51
1740--1883	14	10.2	14	68	19	59	39	0	13	47	1.43
1740--1883	25	5.7	25	67	22	86	39	0	13	47	1.43
1762--1870	45	2.4	46	87	6	150	40	0	11	48	1.38
1240--1875	115	5.6	112	85	11	607	40	0	13	46	1.43
4177--4252	35	2.1	37	81	13	88	46	10	0	43	1.38
4580--4639	26	2.3	26	88	2	84	6	33	8	51	1.58
4683--4749	33	2.0	33	100	0	134	26	29	11	31	1.92
4866--4904	18	2.1	19	95	4	71	25	17	56	0	1.41
8806--8930	47	2.8	45	85	7	164	30	20	8	40	1.83
12786--12847	18	3.6	17	80	10	72	9	17	0	72	1.10
12821--12881	21	2.7	22	82	12	72	6	18	1	73	1.12
12785--12891	40	2.9	38	78	15	93	7	17	0	73	1.11
12788--12891	17	5.8	17	74	24	74	6	18	0	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15559--15683	47	2.8	45	86	7	173	30	21	8	39	1.84
15559--15697	47	3.2	41	80	14	122	30	22	8	38	1.84
22986--23025	20	2.0	21	95	5	73	32	22	20	25	1.98
23492--23663	90	1.9	92	91	2	285	37	12	6	44	1.68
31041--31104	24	2.7	24	97	0	119	15	28	15	40	1.88
48316--48361	23	2.0	24	86	4	67	65	0	4	30	1.12
49612--49643	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1

The End!